BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115097.2.1
(987 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA... 240 1e-060
ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA 240 1e-060
dbj|AP004587.3| Oryza sativa (japonica cultivar-group) geno... 186 2e-044
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 186 2e-044
gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) c... 186 2e-044
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 186 2e-044
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 186 2e-044
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 186 2e-044
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 186 2e-044
dbj|AK071328.1| Oryza sativa (japonica cultivar-group) cDNA... 117 1e-023
gb|AY100692.1| Oryza sativa (japonica cultivar-group) alpha... 117 1e-023
gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) c... 103 2e-019
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 103 2e-019
ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Oz... 103 2e-019
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 103 2e-019
dbj|AP000837.1| Oryza sativa (japonica cultivar-group) geno... 103 2e-019
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 103 2e-019
gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha... 103 2e-019
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 103 2e-019
gb|AQ863234.1|AQ863234 nbeb0020H17f CUGI Rice BAC Library (... 90 3e-015
gb|AU172682.1|AU172682 AU172682 Rice panicle at flowering s... 90 3e-015
emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC O... 90 3e-015
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 90 3e-015
gb|AACV01025197.1| Oryza sativa (japonica cultivar-group) c... 90 3e-015
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 90 3e-015
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 90 3e-015
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 90 3e-015
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 90 3e-015
gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (j... 74 2e-010
dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA... 74 2e-010
ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA 74 2e-010
ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-... 74 2e-010
gb|C72427.1|C72427 C72427 Rice panicle at flowering stage O... 62 6e-007
gb|AU172681.1|AU172681 AU172681 Rice panicle at flowering s... 62 6e-007
gb|AU182573.1|AU182573 AU182573 Rice panicle at flowering s... 62 6e-007
dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA... 62 6e-007
gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group)... 62 6e-007
gb|AACV01025196.1| Oryza sativa (japonica cultivar-group) c... 62 6e-007
ref|NM_190380.1| Oryza sativa (japonica cultivar-group), p... 62 6e-007
gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) c... 58 9e-006
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 58 9e-006
dbj|AP004114.3| Oryza sativa (japonica cultivar-group) geno... 58 9e-006
dbj|AP005297.3| Oryza sativa (japonica cultivar-group) geno... 58 9e-006
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 58 9e-006
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 58 9e-006
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 58 9e-006
ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA 56 4e-005
gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha... 56 4e-005
dbj|AP003938.1| Oryza sativa (japonica cultivar-group) chro... 52 6e-004
dbj|AK101940.1| Oryza sativa (japonica cultivar-group) cDNA... 52 6e-004
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 52 6e-004
dbj|AP003539.3| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
gb|AACV01014579.1| Oryza sativa (japonica cultivar-group) c... 52 6e-004
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 52 6e-004
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 52 6e-004
dbj|AP005176.3| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01016370.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|D41419.1|D41419 RICS3911A Rice shoot Oryza sativa (japon... 48 0.009
gb|AU069455.1|AU069455 AU069455 Rice callus Oryza sativa (j... 48 0.009
gb|BP184580.1|BP184580 BP184580 pNS rice panicle cDNA, flow... 48 0.009
dbj|AK062225.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
dbj|AK066414.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.009
ref|NT_107140.1| Oryza sativa (japonica cultivar-group) 48 0.009
gb|AACV01002595.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
gb|AACV01010380.1| Oryza sativa (japonica cultivar-group) c... 48 0.009
ref|XM_473658.1| Oryza sativa (japonica cultivar-group), p... 48 0.009
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 48 0.009
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 48 0.009
dbj|AP003348.3| Oryza sativa (japonica cultivar-group) geno... 48 0.009
dbj|AP003230.4| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
emb|AL662987.3|OSJN00188 Oryza sativa genomic DNA, chromoso... 48 0.009
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 48 0.009
gb|AC147812.2| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|AC120527.3| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.009
gb|CV723142.1|CV723142 root--02-K01.g1 Rice root lambda pha... 46 0.036
dbj|AK060313.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.036
gb|AC130731.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
gb|AC145273.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
gb|AACV01011538.1| Oryza sativa (japonica cultivar-group) c... 46 0.036
ref|NT_107229.1| Oryza sativa (japonica cultivar-group) 46 0.036
gb|CH401200.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.036
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 46 0.036
gb|CV730571.1|CV730571 FLO--04-C21.b1 Rice flower lambda ph... 44 0.14
dbj|AK100179.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AK105988.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.14
dbj|AP005196.4| Oryza sativa (japonica cultivar-group) geno... 44 0.14
gb|AACV01016366.1| Oryza sativa (japonica cultivar-group) c... 44 0.14
ref|XM_475418.1| Oryza sativa (japonica cultivar-group), p... 44 0.14
>dbj|AK070505.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023052B04, full
insert sequence
Length = 1088
Score = 240 bits (121), Expect = 1e-060
Identities = 334/405 (82%)
Strand = Plus / Minus
Query: 301 gaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtgcca 360
||||||||||| |||||||| ||||||||||||| |||||| | |||||| ||||||||
Sbjct: 883 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 824
Query: 361 tgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggtgag 420
|||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct: 823 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 764
Query: 421 gtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgacgcg 480
| ||||| ||||||||| | ||||||||||||||||||| | |||||||| || |
Sbjct: 763 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 704
Query: 481 cttgctccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgt 540
|||| ||||||||||||| | | | || | ||| || || |||||||| || | | | |
Sbjct: 703 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 644
Query: 541 caccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgca 600
||||| |||||||||| ||||||||| || ||||||| ||| || ||| |||| | ||
Sbjct: 643 caccaggttgaagtacgggttcccggttatcgtgtacctgatcccacccaccttcacaca 584
Query: 601 cgccaccctgcggtaggagatcggcacgatgccggccttctcttgcgcgatctggaggaa 660
|| ||||| | ||| || || |||||||||||||||||||| ||||||||||| || ||
Sbjct: 583 cggcacccgtctgtacgatatgggcacgatgccggccttctcctgcgcgatctgcagaaa 524
Query: 661 cgcgggcatgctgaggtcgaagtgctcccgcggtggcttgcacca 705
|| |||||| |||||| |||||||| ||||| || ||||||||
Sbjct: 523 ggccggcatggagaggtcaaagtgctcgcgcggcgggttgcacca 479
Score = 153 bits (77), Expect = 2e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 776 gggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagc 835
||||||||||||||| ||||||||||| |||||||| | | |||| | |||||||||
Sbjct: 387 gggctgtccacgcacttgacctcgtagcaggcgccgcagccggcgccggcgccgaacagc 328
Query: 836 accgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgcgtgtccttgtacccg 895
||||||||| |||||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 327 ggcgtgctcaccgccaccgtctgcacgccgtagccttccttggacgtgtccttgtacccg 268
Query: 896 cacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcgggt 955
|||||||| || |||||||||||||| |||||||||||||| |||||||| || |
Sbjct: 267 cacgcgccgtccagcgtgccggacccgtcgcgcccgccgtagaacgtcgcgtgcgcctgc 208
Query: 956 ttccacggcccggccgtgaacttgccgtg 984
||||| ||||| |||||||||||||||||
Sbjct: 207 ttccatggccccgccgtgaacttgccgtg 179
>ref|XM_483792.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1088
Score = 240 bits (121), Expect = 1e-060
Identities = 334/405 (82%)
Strand = Plus / Minus
Query: 301 gaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtgcca 360
||||||||||| |||||||| ||||||||||||| |||||| | |||||| ||||||||
Sbjct: 883 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 824
Query: 361 tgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggtgag 420
|||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct: 823 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 764
Query: 421 gtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgacgcg 480
| ||||| ||||||||| | ||||||||||||||||||| | |||||||| || |
Sbjct: 763 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 704
Query: 481 cttgctccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgt 540
|||| ||||||||||||| | | | || | ||| || || |||||||| || | | | |
Sbjct: 703 cttgttccccttcaccgatagccctgccacgtcacccgccccgcccacgttcgacaccat 644
Query: 541 caccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgca 600
||||| |||||||||| ||||||||| || ||||||| ||| || ||| |||| | ||
Sbjct: 643 caccaggttgaagtacgggttcccggttatcgtgtacctgatcccacccaccttcacaca 584
Query: 601 cgccaccctgcggtaggagatcggcacgatgccggccttctcttgcgcgatctggaggaa 660
|| ||||| | ||| || || |||||||||||||||||||| ||||||||||| || ||
Sbjct: 583 cggcacccgtctgtacgatatgggcacgatgccggccttctcctgcgcgatctgcagaaa 524
Query: 661 cgcgggcatgctgaggtcgaagtgctcccgcggtggcttgcacca 705
|| |||||| |||||| |||||||| ||||| || ||||||||
Sbjct: 523 ggccggcatggagaggtcaaagtgctcgcgcggcgggttgcacca 479
Score = 153 bits (77), Expect = 2e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 776 gggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagc 835
||||||||||||||| ||||||||||| |||||||| | | |||| | |||||||||
Sbjct: 387 gggctgtccacgcacttgacctcgtagcaggcgccgcagccggcgccggcgccgaacagc 328
Query: 836 accgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgcgtgtccttgtacccg 895
||||||||| |||||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 327 ggcgtgctcaccgccaccgtctgcacgccgtagccttccttggacgtgtccttgtacccg 268
Query: 896 cacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcgggt 955
|||||||| || |||||||||||||| |||||||||||||| |||||||| || |
Sbjct: 267 cacgcgccgtccagcgtgccggacccgtcgcgcccgccgtagaacgtcgcgtgcgcctgc 208
Query: 956 ttccacggcccggccgtgaacttgccgtg 984
||||| ||||| |||||||||||||||||
Sbjct: 207 ttccatggccccgccgtgaacttgccgtg 179
>dbj|AP004587.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0543D10
Length = 134866
Score = 186 bits (94), Expect = 2e-044
Identities = 172/198 (86%)
Strand = Plus / Minus
Query: 301 gaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtgcca 360
||||||||||| |||||||| ||||||||||||| |||||| | |||||| ||||||||
Sbjct: 14736 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 14677
Query: 361 tgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggtgag 420
|||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct: 14676 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 14617
Query: 421 gtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgacgcg 480
| ||||| ||||||||| | ||||||||||||||||||| | |||||||| || |
Sbjct: 14616 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 14557
Query: 481 cttgctccccttcaccga 498
|||| |||||||||||||
Sbjct: 14556 cttgttccccttcaccga 14539
Score = 153 bits (77), Expect = 2e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 776 gggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagc 835
||||||||||||||| ||||||||||| |||||||| | | |||| | |||||||||
Sbjct: 14165 gggctgtccacgcacttgacctcgtagcaggcgccgcagccggcgccggcgccgaacagc 14106
Query: 836 accgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgcgtgtccttgtacccg 895
||||||||| |||||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 14105 ggcgtgctcaccgccaccgtctgcacgccgtagccttccttggacgtgtccttgtacccg 14046
Query: 896 cacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcgggt 955
|||||||| || |||||||||||||| |||||||||||||| |||||||| || |
Sbjct: 14045 cacgcgccgtccagcgtgccggacccgtcgcgcccgccgtagaacgtcgcgtgcgcctgc 13986
Query: 956 ttccacggcccggccgtgaacttgccgtg 984
||||| ||||| |||||||||||||||||
Sbjct: 13985 ttccatggccccgccgtgaacttgccgtg 13957
Score = 77.8 bits (39), Expect = 1e-011
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 623 ggcacgatgccggccttctcttgcgcgatctggaggaacgcgggcatgctgaggtcgaag 682
|||||||||||||||||||| ||||||||||| || || || |||||| |||||| |||
Sbjct: 14339 ggcacgatgccggccttctcctgcgcgatctgcagaaaggccggcatggagaggtcaaag 14280
Query: 683 tgctcccgcggtggcttgcacca 705
||||| ||||| || ||||||||
Sbjct: 14279 tgctcgcgcggcgggttgcacca 14257
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0604E01
Length = 159049
Score = 186 bits (94), Expect = 2e-044
Identities = 172/198 (86%)
Strand = Plus / Minus
Query: 301 gaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtgcca 360
||||||||||| |||||||| ||||||||||||| |||||| | |||||| ||||||||
Sbjct: 128758 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 128699
Query: 361 tgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggtgag 420
|||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct: 128698 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 128639
Query: 421 gtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgacgcg 480
| ||||| ||||||||| | ||||||||||||||||||| | |||||||| || |
Sbjct: 128638 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 128579
Query: 481 cttgctccccttcaccga 498
|||| |||||||||||||
Sbjct: 128578 cttgttccccttcaccga 128561
Score = 153 bits (77), Expect = 2e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 776 gggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagc 835
||||||||||||||| ||||||||||| |||||||| | | |||| | |||||||||
Sbjct: 128187 gggctgtccacgcacttgacctcgtagcaggcgccgcagccggcgccggcgccgaacagc 128128
Query: 836 accgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgcgtgtccttgtacccg 895
||||||||| |||||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 128127 ggcgtgctcaccgccaccgtctgcacgccgtagccttccttggacgtgtccttgtacccg 128068
Query: 896 cacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcgggt 955
|||||||| || |||||||||||||| |||||||||||||| |||||||| || |
Sbjct: 128067 cacgcgccgtccagcgtgccggacccgtcgcgcccgccgtagaacgtcgcgtgcgcctgc 128008
Query: 956 ttccacggcccggccgtgaacttgccgtg 984
||||| ||||| |||||||||||||||||
Sbjct: 128007 ttccatggccccgccgtgaacttgccgtg 127979
Score = 77.8 bits (39), Expect = 1e-011
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 623 ggcacgatgccggccttctcttgcgcgatctggaggaacgcgggcatgctgaggtcgaag 682
|||||||||||||||||||| ||||||||||| || || || |||||| |||||| |||
Sbjct: 128361 ggcacgatgccggccttctcctgcgcgatctgcagaaaggccggcatggagaggtcaaag 128302
Query: 683 tgctcccgcggtggcttgcacca 705
||||| ||||| || ||||||||
Sbjct: 128301 tgctcgcgcggcgggttgcacca 128279
>gb|AACV01018997.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018997, whole
genome shotgun sequence
Length = 21087
Score = 186 bits (94), Expect = 2e-044
Identities = 172/198 (86%)
Strand = Plus / Plus
Query: 301 gaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtgcca 360
||||||||||| |||||||| ||||||||||||| |||||| | |||||| ||||||||
Sbjct: 12076 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 12135
Query: 361 tgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggtgag 420
|||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct: 12136 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 12195
Query: 421 gtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgacgcg 480
| ||||| ||||||||| | ||||||||||||||||||| | |||||||| || |
Sbjct: 12196 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 12255
Query: 481 cttgctccccttcaccga 498
|||| |||||||||||||
Sbjct: 12256 cttgttccccttcaccga 12273
Score = 145 bits (73), Expect = 5e-032
Identities = 175/209 (83%)
Strand = Plus / Plus
Query: 776 gggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagc 835
||||||||||||||| ||||||||||| |||||||| | | || | | |||||||||
Sbjct: 12647 gggctgtccacgcacttgacctcgtagcaggcgccgcagccggcgcaggcgccgaacagc 12706
Query: 836 accgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgcgtgtccttgtacccg 895
||||||||| |||||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 12707 ggcgtgctcaccgccaccgtctgcacgccgtagccttccttggacgtgtccttgtacccg 12766
Query: 896 cacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcgggt 955
|||||||| || |||||||||||||| |||||||||||||| |||||||| || |
Sbjct: 12767 cacgcgccgtccagcgtgccggacccgtcgcgcccgccgtagaacgtcgcgtgcgcctgc 12826
Query: 956 ttccacggcccggccgtgaacttgccgtg 984
||||| ||||| |||||||||||||||||
Sbjct: 12827 ttccatggccccgccgtgaacttgccgtg 12855
Score = 77.8 bits (39), Expect = 1e-011
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 623 ggcacgatgccggccttctcttgcgcgatctggaggaacgcgggcatgctgaggtcgaag 682
|||||||||||||||||||| ||||||||||| || || || |||||| |||||| |||
Sbjct: 12473 ggcacgatgccggccttctcctgcgcgatctgcagaaaggccggcatggagaggtcaaag 12532
Query: 683 tgctcccgcggtggcttgcacca 705
||||| ||||| || ||||||||
Sbjct: 12533 tgctcgcgcggcgggttgcacca 12555
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 186 bits (94), Expect = 2e-044
Identities = 172/198 (86%)
Strand = Plus / Minus
Query: 301 gaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtgcca 360
||||||||||| |||||||| ||||||||||||| |||||| | |||||| ||||||||
Sbjct: 27893176 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 27893117
Query: 361 tgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggtgag 420
|||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct: 27893116 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 27893057
Query: 421 gtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgacgcg 480
| ||||| ||||||||| | ||||||||||||||||||| | |||||||| || |
Sbjct: 27893056 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 27892997
Query: 481 cttgctccccttcaccga 498
|||| |||||||||||||
Sbjct: 27892996 cttgttccccttcaccga 27892979
Score = 153 bits (77), Expect = 2e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 776 gggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagc 835
||||||||||||||| ||||||||||| |||||||| | | |||| | |||||||||
Sbjct: 27892605 gggctgtccacgcacttgacctcgtagcaggcgccgcagccggcgccggcgccgaacagc 27892546
Query: 836 accgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgcgtgtccttgtacccg 895
||||||||| |||||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 27892545 ggcgtgctcaccgccaccgtctgcacgccgtagccttccttggacgtgtccttgtacccg 27892486
Query: 896 cacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcgggt 955
|||||||| || |||||||||||||| |||||||||||||| |||||||| || |
Sbjct: 27892485 cacgcgccgtccagcgtgccggacccgtcgcgcccgccgtagaacgtcgcgtgcgcctgc 27892426
Query: 956 ttccacggcccggccgtgaacttgccgtg 984
||||| ||||| |||||||||||||||||
Sbjct: 27892425 ttccatggccccgccgtgaacttgccgtg 27892397
Score = 77.8 bits (39), Expect = 1e-011
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 623 ggcacgatgccggccttctcttgcgcgatctggaggaacgcgggcatgctgaggtcgaag 682
|||||||||||||||||||| ||||||||||| || || || |||||| |||||| |||
Sbjct: 27892779 ggcacgatgccggccttctcctgcgcgatctgcagaaaggccggcatggagaggtcaaag 27892720
Query: 683 tgctcccgcggtggcttgcacca 705
||||| ||||| || ||||||||
Sbjct: 27892719 tgctcgcgcggcgggttgcacca 27892697
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 186 bits (94), Expect = 2e-044
Identities = 172/198 (86%)
Strand = Plus / Minus
Query: 301 gaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtgcca 360
||||||||||| |||||||| ||||||||||||| |||||| | |||||| ||||||||
Sbjct: 19206664 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 19206605
Query: 361 tgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggtgag 420
|||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct: 19206604 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 19206545
Query: 421 gtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgacgcg 480
| ||||| ||||||||| | ||||||||||||||||||| | |||||||| || |
Sbjct: 19206544 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 19206485
Query: 481 cttgctccccttcaccga 498
|||| |||||||||||||
Sbjct: 19206484 cttgttccccttcaccga 19206467
Score = 145 bits (73), Expect = 5e-032
Identities = 175/209 (83%)
Strand = Plus / Minus
Query: 776 gggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagc 835
||||||||||||||| ||||||||||| |||||||| | | || | | |||||||||
Sbjct: 19206093 gggctgtccacgcacttgacctcgtagcaggcgccgcagccggcgcaggcgccgaacagc 19206034
Query: 836 accgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgcgtgtccttgtacccg 895
||||||||| |||||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 19206033 ggcgtgctcaccgccaccgtctgcacgccgtagccttccttggacgtgtccttgtacccg 19205974
Query: 896 cacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcgggt 955
|||||||| || |||||||||||||| |||||||||||||| |||||||| || |
Sbjct: 19205973 cacgcgccgtccagcgtgccggacccgtcgcgcccgccgtagaacgtcgcgtgcgcctgc 19205914
Query: 956 ttccacggcccggccgtgaacttgccgtg 984
||||| ||||| |||||||||||||||||
Sbjct: 19205913 ttccatggccccgccgtgaacttgccgtg 19205885
Score = 77.8 bits (39), Expect = 1e-011
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 623 ggcacgatgccggccttctcttgcgcgatctggaggaacgcgggcatgctgaggtcgaag 682
|||||||||||||||||||| ||||||||||| || || || |||||| |||||| |||
Sbjct: 19206267 ggcacgatgccggccttctcctgcgcgatctgcagaaaggccggcatggagaggtcaaag 19206208
Query: 683 tgctcccgcggtggcttgcacca 705
||||| ||||| || ||||||||
Sbjct: 19206207 tgctcgcgcggcgggttgcacca 19206185
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 186 bits (94), Expect = 2e-044
Identities = 172/198 (86%)
Strand = Plus / Minus
Query: 301 gaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtgcca 360
||||||||||| |||||||| ||||||||||||| |||||| | |||||| ||||||||
Sbjct: 26808670 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 26808611
Query: 361 tgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggtgag 420
|||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct: 26808610 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 26808551
Query: 421 gtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgacgcg 480
| ||||| ||||||||| | ||||||||||||||||||| | |||||||| || |
Sbjct: 26808550 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 26808491
Query: 481 cttgctccccttcaccga 498
|||| |||||||||||||
Sbjct: 26808490 cttgttccccttcaccga 26808473
Score = 145 bits (73), Expect = 5e-032
Identities = 175/209 (83%)
Strand = Plus / Minus
Query: 776 gggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagc 835
||||||||||||||| ||||||||||| |||||||| | | || | | |||||||||
Sbjct: 26808099 gggctgtccacgcacttgacctcgtagcaggcgccgcagccggcgcaggcgccgaacagc 26808040
Query: 836 accgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgcgtgtccttgtacccg 895
||||||||| |||||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 26808039 ggcgtgctcaccgccaccgtctgcacgccgtagccttccttggacgtgtccttgtacccg 26807980
Query: 896 cacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcgggt 955
|||||||| || |||||||||||||| |||||||||||||| |||||||| || |
Sbjct: 26807979 cacgcgccgtccagcgtgccggacccgtcgcgcccgccgtagaacgtcgcgtgcgcctgc 26807920
Query: 956 ttccacggcccggccgtgaacttgccgtg 984
||||| ||||| |||||||||||||||||
Sbjct: 26807919 ttccatggccccgccgtgaacttgccgtg 26807891
Score = 77.8 bits (39), Expect = 1e-011
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 623 ggcacgatgccggccttctcttgcgcgatctggaggaacgcgggcatgctgaggtcgaag 682
|||||||||||||||||||| ||||||||||| || || || |||||| |||||| |||
Sbjct: 26808273 ggcacgatgccggccttctcctgcgcgatctgcagaaaggccggcatggagaggtcaaag 26808214
Query: 683 tgctcccgcggtggcttgcacca 705
||||| ||||| || ||||||||
Sbjct: 26808213 tgctcgcgcggcgggttgcacca 26808191
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 186 bits (94), Expect = 2e-044
Identities = 172/198 (86%)
Strand = Plus / Minus
Query: 301 gaagttcttggatgcctggtacgtgacgccgaacttccagtcagcggggagaacgtgcca 360
||||||||||| |||||||| ||||||||||||| |||||| | |||||| ||||||||
Sbjct: 28131263 gaagttcttggtagcctggtaggtgacgccgaactgccagtcgggggggaggacgtgcca 28131204
Query: 361 tgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcaggtgag 420
|||||||||||||||||||||| ||||||||||| ||||||||||||||| | ||||||
Sbjct: 28131203 ggaggtggccttgcggtggtcgccggtcatcaccctgaacgtcagcgactctccggtgag 28131144
Query: 421 gtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttgacgcg 480
| ||||| ||||||||| | ||||||||||||||||||| | |||||||| || |
Sbjct: 28131143 gacctccgacgtctgccactcctgcccccagttgcgcttcagcggagtccacttcaccct 28131084
Query: 481 cttgctccccttcaccga 498
|||| |||||||||||||
Sbjct: 28131083 cttgttccccttcaccga 28131066
Score = 153 bits (77), Expect = 2e-034
Identities = 176/209 (84%)
Strand = Plus / Minus
Query: 776 gggctgtccacgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagc 835
||||||||||||||| ||||||||||| |||||||| | | |||| | |||||||||
Sbjct: 28130692 gggctgtccacgcacttgacctcgtagcaggcgccgcagccggcgccggcgccgaacagc 28130633
Query: 836 accgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgcgtgtccttgtacccg 895
||||||||| |||||||||||||||||||| || | | | ||||||||||||||||
Sbjct: 28130632 ggcgtgctcaccgccaccgtctgcacgccgtagccttccttggacgtgtccttgtacccg 28130573
Query: 896 cacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaaggtcgcgtgggcgggt 955
|||||||| || |||||||||||||| |||||||||||||| |||||||| || |
Sbjct: 28130572 cacgcgccgtccagcgtgccggacccgtcgcgcccgccgtagaacgtcgcgtgcgcctgc 28130513
Query: 956 ttccacggcccggccgtgaacttgccgtg 984
||||| ||||| |||||||||||||||||
Sbjct: 28130512 ttccatggccccgccgtgaacttgccgtg 28130484
Score = 77.8 bits (39), Expect = 1e-011
Identities = 72/83 (86%)
Strand = Plus / Minus
Query: 623 ggcacgatgccggccttctcttgcgcgatctggaggaacgcgggcatgctgaggtcgaag 682
|||||||||||||||||||| ||||||||||| || || || |||||| |||||| |||
Sbjct: 28130866 ggcacgatgccggccttctcctgcgcgatctgcagaaaggccggcatggagaggtcaaag 28130807
Query: 683 tgctcccgcggtggcttgcacca 705
||||| ||||| || ||||||||
Sbjct: 28130806 tgctcgcgcggcgggttgcacca 28130784
>dbj|AK071328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087C24, full
insert sequence
Length = 1175
Score = 117 bits (59), Expect = 1e-023
Identities = 263/331 (79%)
Strand = Plus / Minus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 831 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 772
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 771 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 712
Query: 477 cgcgcttgctccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtga 536
| |||||| |||||||||||| || | | | | ||| || ||||||||||| || | |
Sbjct: 711 cccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttca 652
Query: 537 tcgtcaccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcg 596
| ||||||||||| | || |||||| || || |||||| || ||||||||| ||
Sbjct: 651 ccatcaccatgttgtacgacgggttccccgttatcgtgtactttatcccgccctgcctca 592
Query: 597 cgcacgccaccctgcggtaggagatcggcacgatgccggccttctcttgcgcgatctgga 656
||||||||||| | |||||||||| ||||||| |||| |||||| | ||||| ||
Sbjct: 591 cgcacgccacctttcggtaggagacgggcacgacgccgagcttctcctcggcgatggaga 532
Query: 657 ggaacgcgggcatgctgaggtcgaagtgctc 687
||||||| |||||| ||||||||||||||||
Sbjct: 531 ggaacgccggcatggtgaggtcgaagtgctc 501
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 341 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 282
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 281 cgtcgcgtg 273
>gb|AY100692.1| Oryza sativa (japonica cultivar-group) alpha expansin 26 (EXPA26)
mRNA, complete cds
Length = 1011
Score = 117 bits (59), Expect = 1e-023
Identities = 263/331 (79%)
Strand = Plus / Minus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 812 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 753
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 752 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 693
Query: 477 cgcgcttgctccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtga 536
| |||||| |||||||||||| || | | | | ||| || ||||||||||| || | |
Sbjct: 692 cccgcttggtccccttcaccgtcagcttcaccacgtcccccgcgccgcccacgttcttca 633
Query: 537 tcgtcaccatgttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcg 596
| ||||||||||| | || |||||| || || |||||| || ||||||||| ||
Sbjct: 632 ccatcaccatgttgtacgacgggttccccgttatcgtgtactttatcccgccctgcctca 573
Query: 597 cgcacgccaccctgcggtaggagatcggcacgatgccggccttctcttgcgcgatctgga 656
||||||||||| | |||||||||| ||||||| |||| |||||| | ||||| ||
Sbjct: 572 cgcacgccacctttcggtaggagacgggcacgacgccgagcttctcctcggcgatggaga 513
Query: 657 ggaacgcgggcatgctgaggtcgaagtgctc 687
||||||| |||||| ||||||||||||||||
Sbjct: 512 ggaacgccggcatggtgaggtcgaagtgctc 482
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 322 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 263
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 262 cgtcgcgtg 254
>gb|AACV01000668.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000668, whole
genome shotgun sequence
Length = 31747
Score = 103 bits (52), Expect = 2e-019
Identities = 103/120 (85%)
Strand = Plus / Plus
Query: 487 ccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccat 546
|||||||||||||||||||| | |||||| |||||||| || ||||||| |||||
Sbjct: 5480 ccccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggtgacgagcaccag 5539
Query: 547 gttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccac 606
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 5540 gttgaagtaggagtggccggtgatggtgaaccggatgccgccctgcttcgcgcacgccac 5599
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 103 bits (52), Expect = 2e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 487 ccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccat 546
|||||||||||||||||||| | |||||| |||||||| || ||||||| |||||
Sbjct: 9523499 ccccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggtgacgagcaccag 9523440
Query: 547 gttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccac 606
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9523439 gttgaagtaggagtggccggtgatggtgaaccggatgccgccctgcttcgcgcacgccac 9523380
Score = 48.1 bits (24), Expect = 0.009
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 786 cgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagcaccgtgctca 845
||||||||| |||||||||| ||||| |||| |||||| |||||||||||||||||
Sbjct: 35219906 cgcaccgcagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcaccgtgctca 35219847
>ref|XM_493787.1| Oryza sativa (japonica cultivar-group), Ozsa8506 predicted mRNA
Length = 747
Score = 103 bits (52), Expect = 2e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 487 ccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccat 546
|||||||||||||||||||| | |||||| |||||||| || ||||||| |||||
Sbjct: 564 ccccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggtgacgagcaccag 505
Query: 547 gttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccac 606
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 504 gttgaagtaggagtggccggtgatggtgaaccggatgccgccctgcttcgcgcacgccac 445
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 103 bits (52), Expect = 2e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 487 ccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccat 546
|||||||||||||||||||| | |||||| |||||||| || ||||||| |||||
Sbjct: 9523339 ccccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggtgacgagcaccag 9523280
Query: 547 gttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccac 606
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9523279 gttgaagtaggagtggccggtgatggtgaaccggatgccgccctgcttcgcgcacgccac 9523220
>dbj|AP000837.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0424A08
Length = 151294
Score = 103 bits (52), Expect = 2e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 487 ccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccat 546
|||||||||||||||||||| | |||||| |||||||| || ||||||| |||||
Sbjct: 59146 ccccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggtgacgagcaccag 59087
Query: 547 gttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccac 606
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 59086 gttgaagtaggagtggccggtgatggtgaaccggatgccgccctgcttcgcgcacgccac 59027
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 103 bits (52), Expect = 2e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 487 ccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccat 546
|||||||||||||||||||| | |||||| |||||||| || ||||||| |||||
Sbjct: 9573213 ccccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggtgacgagcaccag 9573154
Query: 547 gttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccac 606
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9573153 gttgaagtaggagtggccggtgatggtgaaccggatgccgccctgcttcgcgcacgccac 9573094
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 103 bits (52), Expect = 2e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 487 ccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccat 546
|||||||||||||||||||| | |||||| |||||||| || ||||||| |||||
Sbjct: 9573213 ccccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggtgacgagcaccag 9573154
Query: 547 gttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccac 606
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9573153 gttgaagtaggagtggccggtgatggtgaaccggatgccgccctgcttcgcgcacgccac 9573094
Score = 48.1 bits (24), Expect = 0.009
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 786 cgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagcaccgtgctca 845
||||||||| |||||||||| ||||| |||| |||||| |||||||||||||||||
Sbjct: 34637056 cgcaccgcagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcaccgtgctca 34636997
>gb|DQ062981.1| Oryza sativa (japonica cultivar-group) alpha-expansin 11 (EXPA11)
mRNA, partial cds
Length = 798
Score = 103 bits (52), Expect = 2e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 487 ccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccat 546
|||||||||||||||||||| | |||||| |||||||| || ||||||| |||||
Sbjct: 555 ccccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggtgacgagcaccag 496
Query: 547 gttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccac 606
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 495 gttgaagtaggagtggccggtgatggtgaaccggatgccgccctgcttcgcgcacgccac 436
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 103 bits (52), Expect = 2e-019
Identities = 103/120 (85%)
Strand = Plus / Minus
Query: 487 ccccttcaccgacaccgccgcgatgtcgccagcgccgcccacattggtgatcgtcaccat 546
|||||||||||||||||||| | |||||| |||||||| || ||||||| |||||
Sbjct: 9525717 ccccttcaccgacaccgccgtcacgtcgccggcgccgccgacgttggtgacgagcaccag 9525658
Query: 547 gttgaagtacttgttcccggtgatggtgtaccggatgccgccctgcttcgcgcacgccac 606
||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 9525657 gttgaagtaggagtggccggtgatggtgaaccggatgccgccctgcttcgcgcacgccac 9525598
Score = 48.1 bits (24), Expect = 0.009
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 786 cgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagcaccgtgctca 845
||||||||| |||||||||| ||||| |||| |||||| |||||||||||||||||
Sbjct: 35139236 cgcaccgcagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcaccgtgctca 35139177
>gb|AQ863234.1|AQ863234 nbeb0020H17f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0020H17f, DNA sequence
Length = 477
Score = 89.7 bits (45), Expect = 3e-015
Identities = 117/141 (82%)
Strand = Plus / Plus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 253 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 312
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 313 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 372
Query: 477 cgcgcttgctccccttcaccg 497
| |||||| ||||||||||||
Sbjct: 373 cccgcttggtccccttcaccg 393
>gb|AU172682.1|AU172682 AU172682 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4381, mRNA sequence
Length = 441
Score = 89.7 bits (45), Expect = 3e-015
Identities = 117/141 (82%)
Strand = Plus / Minus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 241 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 182
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 181 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 122
Query: 477 cgcgcttgctccccttcaccg 497
| |||||| ||||||||||||
Sbjct: 121 cccgcttggtccccttcaccg 101
>emb|AL731742.3|CNS08C7R Oryza sativa chromosome 12, . BAC OJ1123_B09 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 155585
Score = 89.7 bits (45), Expect = 3e-015
Identities = 117/141 (82%)
Strand = Plus / Plus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 127739 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 127798
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 127799 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 127858
Query: 477 cgcgcttgctccccttcaccg 497
| |||||| ||||||||||||
Sbjct: 127859 cccgcttggtccccttcaccg 127879
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 129489 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 129548
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 129549 cgtcgcgtg 129557
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 655 gaggaacgcgggcatgctgaggtcgaagtgctc 687
||||||||| |||||| ||||||||||||||||
Sbjct: 129297 gaggaacgccggcatggtgaggtcgaagtgctc 129329
>ref|NT_107150.1| Oryza sativa (japonica cultivar-group)
Length = 2060995
Score = 89.7 bits (45), Expect = 3e-015
Identities = 117/141 (82%)
Strand = Plus / Minus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 637426 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 637367
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 637366 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 637307
Query: 477 cgcgcttgctccccttcaccg 497
| |||||| ||||||||||||
Sbjct: 637306 cccgcttggtccccttcaccg 637286
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 635676 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 635617
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 635616 cgtcgcgtg 635608
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 655 gaggaacgcgggcatgctgaggtcgaagtgctc 687
||||||||| |||||| ||||||||||||||||
Sbjct: 635868 gaggaacgccggcatggtgaggtcgaagtgctc 635836
>gb|AACV01025197.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025197, whole
genome shotgun sequence
Length = 12082
Score = 89.7 bits (45), Expect = 3e-015
Identities = 117/141 (82%)
Strand = Plus / Minus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 1119 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 1060
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 1059 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 1000
Query: 477 cgcgcttgctccccttcaccg 497
| |||||| ||||||||||||
Sbjct: 999 cccgcttggtccccttcaccg 979
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118 genomic
scaffold, whole genome shotgun sequence
Length = 3660441
Score = 89.7 bits (45), Expect = 3e-015
Identities = 117/141 (82%)
Strand = Plus / Minus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 2800582 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 2800523
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 2800522 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 2800463
Query: 477 cgcgcttgctccccttcaccg 497
| |||||| ||||||||||||
Sbjct: 2800462 cccgcttggtccccttcaccg 2800442
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 2797965 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 2797906
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 2797905 cgtcgcgtg 2797897
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 655 gaggaacgcgggcatgctgaggtcgaagtgctc 687
||||||||| |||||| ||||||||||||||||
Sbjct: 2798157 gaggaacgccggcatggtgaggtcgaagtgctc 2798125
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 89.7 bits (45), Expect = 3e-015
Identities = 117/141 (82%)
Strand = Plus / Minus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 18323687 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 18323628
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 18323627 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 18323568
Query: 477 cgcgcttgctccccttcaccg 497
| |||||| ||||||||||||
Sbjct: 18323567 cccgcttggtccccttcaccg 18323547
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 18321070 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 18321011
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 18321010 cgtcgcgtg 18321002
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 655 gaggaacgcgggcatgctgaggtcgaagtgctc 687
||||||||| |||||| ||||||||||||||||
Sbjct: 18321262 gaggaacgccggcatggtgaggtcgaagtgctc 18321230
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 89.7 bits (45), Expect = 3e-015
Identities = 117/141 (82%)
Strand = Plus / Minus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 22125271 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 22125212
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 22125211 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 22125152
Query: 477 cgcgcttgctccccttcaccg 497
| |||||| ||||||||||||
Sbjct: 22125151 cccgcttggtccccttcaccg 22125131
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 22123521 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 22123462
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 22123461 cgtcgcgtg 22123453
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 655 gaggaacgcgggcatgctgaggtcgaagtgctc 687
||||||||| |||||| ||||||||||||||||
Sbjct: 22123713 gaggaacgccggcatggtgaggtcgaagtgctc 22123681
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 89.7 bits (45), Expect = 3e-015
Identities = 117/141 (82%)
Strand = Plus / Minus
Query: 357 gccatgaggtggccttgcggtggtcgctggtcatcacccggaacgtcagcgactcgcagg 416
|||| |||||||||||||||||||||| |||||| |||||||| || |||||||||| ||
Sbjct: 22053616 gccaggaggtggccttgcggtggtcgccggtcatgacccggaaggtgagcgactcgccgg 22053557
Query: 417 tgaggtcctccccggtctgccacacttgcccccagttgcgcttcatctccgtccacttga 476
|||||| || | |||| ||| | || |||||| |||||| || | ||||||||| |
Sbjct: 22053556 tgaggttggcctccgtcttccagagctggccccagctgcgctgcagcggcgtccacttca 22053497
Query: 477 cgcgcttgctccccttcaccg 497
| |||||| ||||||||||||
Sbjct: 22053496 cccgcttggtccccttcaccg 22053476
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 22051866 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 22051807
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 22051806 cgtcgcgtg 22051798
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 655 gaggaacgcgggcatgctgaggtcgaagtgctc 687
||||||||| |||||| ||||||||||||||||
Sbjct: 22052058 gaggaacgccggcatggtgaggtcgaagtgctc 22052026
>gb|CB645779.1|CB645779 OSJNEb07L24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07L24 5', mRNA sequence
Length = 838
Score = 73.8 bits (37), Expect = 2e-010
Identities = 106/129 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 711 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 652
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggcacgat 630
|||| ||||||| ||||||| |||| ||| ||||||| ||||||||||| || || ||
Sbjct: 651 ggtgaaccggatcccgcccttcttctggcaagccacccggcggtaggagacggggacaat 592
Query: 631 gccggcctt 639
|||||||||
Sbjct: 591 gccggcctt 583
>dbj|AK073572.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033044E11, full
insert sequence
Length = 1416
Score = 73.8 bits (37), Expect = 2e-010
Identities = 106/129 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 742 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 683
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggcacgat 630
|||| ||||||| ||||||| |||| ||| ||||||| ||||||||||| || || ||
Sbjct: 682 ggtgaaccggatcccgcccttcttctggcaagccacccggcggtaggagacggggacaat 623
Query: 631 gccggcctt 639
|||||||||
Sbjct: 622 gccggcctt 614
>dbj|AK107334.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-126-F08, full
insert sequence
Length = 1290
Score = 73.8 bits (37), Expect = 2e-010
Identities = 106/129 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 737 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 678
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggcacgat 630
|||| ||||||| ||||||| |||| ||| ||||||| ||||||||||| || || ||
Sbjct: 677 ggtgaaccggatcccgcccttcttctggcaagccacccggcggtaggagacggggacaat 618
Query: 631 gccggcctt 639
|||||||||
Sbjct: 617 gccggcctt 609
>ref|XM_467754.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1289
Score = 73.8 bits (37), Expect = 2e-010
Identities = 106/129 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 737 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 678
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggcacgat 630
|||| ||||||| ||||||| |||| ||| ||||||| ||||||||||| || || ||
Sbjct: 677 ggtgaaccggatcccgcccttcttctggcaagccacccggcggtaggagacggggacaat 618
Query: 631 gccggcctt 639
|||||||||
Sbjct: 617 gccggcctt 609
>ref|XM_506968.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.30
mRNA
Length = 1417
Score = 73.8 bits (37), Expect = 2e-010
Identities = 106/129 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 743 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 684
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagatcggcacgat 630
|||| ||||||| ||||||| |||| ||| ||||||| ||||||||||| || || ||
Sbjct: 683 ggtgaaccggatcccgcccttcttctggcaagccacccggcggtaggagacggggacaat 624
Query: 631 gccggcctt 639
|||||||||
Sbjct: 623 gccggcctt 615
>gb|C72427.1|C72427 C72427 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E1603_1A, mRNA sequence
Length = 441
Score = 61.9 bits (31), Expect = 6e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 562 cccggtgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagat 621
|||| |||||||| ||| ||| ||||||| |||| |||||| |||||| | ||||||||
Sbjct: 245 cccgttgatggtgaacctgatcccgcccttcttcacgcacggcacccttctgtaggagac 186
Query: 622 cggcacgatgccggc 636
||||||||||||||
Sbjct: 185 gggcacgatgccggc 171
>gb|AU172681.1|AU172681 AU172681 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4381, mRNA sequence
Length = 446
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 321 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 262
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 261 cgtcgcgtg 253
>gb|AU182573.1|AU182573 AU182573 Rice panicle at flowering stage Oryza sativa (japonica
cultivar-group) cDNA clone E4432, mRNA sequence
Length = 443
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Minus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 321 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 262
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 261 cgtcgcgtg 253
>dbj|AK070463.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023048M24, full
insert sequence
Length = 1341
Score = 61.9 bits (31), Expect = 6e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 562 cccggtgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagat 621
|||| |||||||| ||| ||| ||||||| |||| |||||| |||||| | ||||||||
Sbjct: 595 cccgttgatggtgaacctgatcccgcccttcttcacgcacggcacccttctgtaggagac 536
Query: 622 cggcacgatgccggc 636
||||||||||||||
Sbjct: 535 gggcacgatgccggc 521
Score = 48.1 bits (24), Expect = 0.009
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 786 cgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagcaccgtgctca 845
||||||||| |||||||||| ||||| |||| |||||| |||||||||||||||||
Sbjct: 356 cgcaccgcagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcaccgtgctca 297
>gb|U30477.1|OSU30477 Oryza sativa (japonica cultivar-group) expansin Os-EXPA2 (Os-EXPA2)
mRNA, complete cds
Length = 1323
Score = 61.9 bits (31), Expect = 6e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 562 cccggtgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagat 621
|||| |||||||| ||| ||| ||||||| |||| |||||| |||||| | ||||||||
Sbjct: 580 cccgttgatggtgaacctgatcccgcccttcttcacgcacggcacccttctgtaggagac 521
Query: 622 cggcacgatgccggc 636
||||||||||||||
Sbjct: 520 gggcacgatgccggc 506
>gb|AACV01025196.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025196,
whole genome shotgun sequence
Length = 6673
Score = 61.9 bits (31), Expect = 6e-007
Identities = 60/69 (86%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 883 gtccttgtacccgcacgcgcc---cgccgtggtgccggacccgtcccgcccgccgtagaa 939
||||||||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||
Sbjct: 499 gtccttgtacccgcacgcgccgccctccgtcgtgcccgacgcgtcgcgcccgccgtagaa 558
Query: 940 ggtcgcgtg 948
||||||||
Sbjct: 559 cgtcgcgtg 567
Score = 50.1 bits (25), Expect = 0.002
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 655 gaggaacgcgggcatgctgaggtcgaagtgctc 687
||||||||| |||||| ||||||||||||||||
Sbjct: 307 gaggaacgccggcatggtgaggtcgaagtgctc 339
>ref|NM_190380.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 756
Score = 61.9 bits (31), Expect = 6e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 562 cccggtgatggtgtaccggatgccgccctgcttcgcgcacgccaccctgcggtaggagat 621
|||| |||||||| ||| ||| ||||||| |||| |||||| |||||| | ||||||||
Sbjct: 498 cccgttgatggtgaacctgatcccgcccttcttcacgcacggcacccttctgtaggagac 439
Query: 622 cggcacgatgccggc 636
||||||||||||||
Sbjct: 438 gggcacgatgccggc 424
Score = 48.1 bits (24), Expect = 0.009
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 786 cgcaccgcacctcgtagcacccgccgcaggccgtgccgtcaccgaacagcaccgtgctca 845
||||||||| |||||||||| ||||| |||| |||||| |||||||||||||||||
Sbjct: 259 cgcaccgcagctcgtagcacgacccgcacgccgcgccgtcgttgaacagcaccgtgctca 200
>gb|AACV01005399.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005399, whole
genome shotgun sequence
Length = 41834
Score = 58.0 bits (29), Expect = 9e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 21389 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 21330
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgc 611
|||| ||||||| ||||||| |||| ||| ||||||||||
Sbjct: 21329 ggtgaaccggatcccgcccttcttctggcaagccaccctgc 21289
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 58.0 bits (29), Expect = 9e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 6404990 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 6404931
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgc 611
|||| ||||||| ||||||| |||| ||| ||||||||||
Sbjct: 6404930 ggtgaaccggatcccgcccttcttctggcaagccaccctgc 6404890
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1118_G04
Length = 134464
Score = 58.0 bits (29), Expect = 9e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 9859 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 9800
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgc 611
|||| ||||||| ||||||| |||| ||| ||||||||||
Sbjct: 9799 ggtgaaccggatcccgcccttcttctggcaagccaccctgc 9759
>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1734_E02
Length = 168566
Score = 58.0 bits (29), Expect = 9e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 119834 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 119775
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgc 611
|||| ||||||| ||||||| |||| ||| ||||||||||
Sbjct: 119774 ggtgaaccggatcccgcccttcttctggcaagccaccctgc 119734
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 58.0 bits (29), Expect = 9e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 17796154 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 17796095
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgc 611
|||| ||||||| ||||||| |||| ||| ||||||||||
Sbjct: 17796094 ggtgaaccggatcccgcccttcttctggcaagccaccctgc 17796054
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 58.0 bits (29), Expect = 9e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 31249218 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 31249159
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgc 611
|||| ||||||| ||||||| |||| ||| ||||||||||
Sbjct: 31249158 ggtgaaccggatcccgcccttcttctggcaagccaccctgc 31249118
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 58.0 bits (29), Expect = 9e-006
Identities = 83/101 (82%)
Strand = Plus / Minus
Query: 511 gtcgccagcgccgcccacattggtgatcgtcaccatgttgaagtacttgttcccggtgat 570
|||||| ||||||||||| ||||| | | ||||| ||||||||| || |||| ||||
Sbjct: 31239991 gtcgccggcgccgcccacgttggtcaccagcaccaggttgaagtaggagtgcccgttgat 31239932
Query: 571 ggtgtaccggatgccgccctgcttcgcgcacgccaccctgc 611
|||| ||||||| ||||||| |||| ||| ||||||||||
Sbjct: 31239931 ggtgaaccggatcccgcccttcttctggcaagccaccctgc 31239891
>ref|XM_470717.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 795
Score = 56.0 bits (28), Expect = 4e-005
Identities = 106/132 (80%)
Strand = Plus / Minus
Query: 821 ccgtcaccgaacagcaccgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgc 880
||||| ||||||| ||||| ||||| ||| |||| | | ||||||||||||| || |
Sbjct: 227 ccgtccccgaacatcaccgcgctcagcgccgccgtgtccgtgccgtacccctgcccgtac 168
Query: 881 gtgtccttgtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaag 940
|||| | ||||||||||||||| || |||||||||| |||| ||||||||||||
Sbjct: 167 gtgttcccgtacccgcacgcgccacccatggtgccggaggcgtcggcgccgccgtagaag 108
Query: 941 gtcgcgtgggcg 952
|| |||||||||
Sbjct: 107 gtggcgtgggcg 96
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 598 gcacgccaccctgcggtaggagatcggcacgatgccgg 635
||||||||||| ||||||||||| || ||||||||||
Sbjct: 489 gcacgccacccggcggtaggagacggggacgatgccgg 452
>gb|DQ061062.1| Oryza sativa (japonica cultivar-group) alpha-expansin 21 (EXPA21)
mRNA, partial cds
Length = 727
Score = 56.0 bits (28), Expect = 4e-005
Identities = 106/132 (80%)
Strand = Plus / Minus
Query: 821 ccgtcaccgaacagcaccgtgctcacggccaccgtctgcacgccgtacccctgcgcgcgc 880
||||| ||||||| ||||| ||||| ||| |||| | | ||||||||||||| || |
Sbjct: 204 ccgtccccgaacatcaccgcgctcagcgccgccgtgtccgtgccgtacccctgcccgtac 145
Query: 881 gtgtccttgtacccgcacgcgcccgccgtggtgccggacccgtcccgcccgccgtagaag 940
|||| | ||||||||||||||| || |||||||||| |||| ||||||||||||
Sbjct: 144 gtgttcccgtacccgcacgcgccacccatggtgccggaggcgtcggcgccgccgtagaag 85
Query: 941 gtcgcgtgggcg 952
|| |||||||||
Sbjct: 84 gtggcgtgggcg 73
Score = 44.1 bits (22), Expect = 0.14
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 598 gcacgccaccctgcggtaggagatcggcacgatgccgg 635
||||||||||| ||||||||||| || ||||||||||
Sbjct: 466 gcacgccacccggcggtaggagacggggacgatgccgg 429
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,372,504
Number of Sequences: 438736
Number of extensions: 1372504
Number of successful extensions: 12268
Number of sequences better than 0.5: 102
Number of HSP's better than 0.5 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11260
Number of HSP's gapped (non-prelim): 972
length of query: 987
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 966
effective length of database: 2,791,206,460
effective search space: 2696305440360
effective search space used: 2696305440360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)