BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943856.2.2
(661 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU058270.1|AU058270 AU058270 Oryza sativa Nipponbare imm... 101 5e-019
gb|CB656699.1|CB656699 OSJNEc11F14.r OSJNEc Oryza sativa (j... 101 5e-019
gb|CB656705.1|CB656705 OSJNEc11F17.r OSJNEc Oryza sativa (j... 101 5e-019
gb|CB656731.1|CB656731 OSJNEc11G13.r OSJNEc Oryza sativa (j... 101 5e-019
gb|CB656759.1|CB656759 OSJNEc11H12.r OSJNEc Oryza sativa (j... 101 5e-019
gb|CB665439.1|CB665439 OSJNEd11N18.f OSJNEd Oryza sativa (j... 101 5e-019
gb|CB665440.1|CB665440 OSJNEd11N18.r OSJNEd Oryza sativa (j... 101 5e-019
gb|CB670406.1|CB670406 OSJNEe03H08.r OSJNEe Oryza sativa (j... 101 5e-019
dbj|AB073749.1| Oryza sativa (japonica cultivar-group) OsCI... 101 5e-019
gb|AY578158.1| Oryza sativa (japonica cultivar-group) cell-... 101 5e-019
dbj|AK120779.1| Oryza sativa (japonica cultivar-group) cDNA... 100 2e-018
ref|XM_472408.1| Oryza sativa (japonica cultivar-group), p... 100 2e-018
gb|AY578160.1| Oryza sativa (japonica cultivar-group) cell-... 100 2e-018
gb|AACV01009702.1| Oryza sativa (japonica cultivar-group) c... 96 3e-017
ref|NT_107198.1| Oryza sativa (japonica cultivar-group) 96 3e-017
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromoso... 96 3e-017
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 96 3e-017
dbj|AK121403.1| Oryza sativa (japonica cultivar-group) cDNA... 94 1e-016
gb|CB647639.1|CB647639 OSJNEb10K09.r OSJNEb Oryza sativa (j... 86 3e-014
gb|CB656697.1|CB656697 OSJNEc11F13.r OSJNEc Oryza sativa (j... 86 3e-014
gb|CB656757.1|CB656757 OSJNEc11H11.r OSJNEc Oryza sativa (j... 86 3e-014
dbj|AK072276.1| Oryza sativa (japonica cultivar-group) cDNA... 70 2e-009
ref|XM_472409.1| Oryza sativa (japonica cultivar-group), p... 70 2e-009
gb|AY578159.1| Oryza sativa (japonica cultivar-group) cell-... 70 2e-009
gb|AACV01009704.1| Oryza sativa (japonica cultivar-group) c... 68 7e-009
gb|CB638672.1|CB638672 OSJNEa07D22.r OSJNEa Oryza sativa (j... 58 6e-006
gb|AQ509935.1|AQ509935 nbxb0094F09r CUGI Rice BAC Library O... 56 2e-005
gb|CB662771.1|CB662771 OSJNEd07B16.r OSJNEd Oryza sativa (j... 56 2e-005
dbj|AP004156.3| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
dbj|AP005798.3| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
gb|AACV01004580.1| Oryza sativa (japonica cultivar-group) c... 56 2e-005
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 56 2e-005
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 56 2e-005
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 56 2e-005
ref|NT_107119.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|AACV01022888.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|CH401263.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AC135599.3| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AU091974.1|AU091974 AU091974 Rice immature leaf includin... 44 0.094
emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC O... 42 0.37
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 42 0.37
gb|AACV01024945.1| Oryza sativa (japonica cultivar-group) c... 42 0.37
gb|CH401280.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.37
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.37
>gb|AU058270.1|AU058270 AU058270 Oryza sativa Nipponbare immature leaf including apical
meristem (under long day condition) Oryza sativa
(japonica cultivar-group) cDNA clone E50295_1A, mRNA
sequence
Length = 467
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| |||||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 138 tctcttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 197
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 198 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 257
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 258 gggggcaagacctgcatcctgtc 280
>gb|CB656699.1|CB656699 OSJNEc11F14.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11F14 3', mRNA sequence
Length = 811
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| |||||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 669 tctcttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 610
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 609 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 550
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 549 gggggcaagacctgcatcctgtc 527
>gb|CB656705.1|CB656705 OSJNEc11F17.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11F17 3', mRNA sequence
Length = 810
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| |||||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 660 tctcttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 601
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 600 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 541
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 540 gggggcaagacctgcatcctgtc 518
>gb|CB656731.1|CB656731 OSJNEc11G13.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11G13 3', mRNA sequence
Length = 802
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| |||||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 710 tctcttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 651
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 650 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 591
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 590 gggggcaagacctgcatcctgtc 568
>gb|CB656759.1|CB656759 OSJNEc11H12.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11H12 3', mRNA sequence
Length = 782
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| |||||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 660 tctcttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 601
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 600 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 541
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 540 gggggcaagacctgcatcctgtc 518
>gb|CB665439.1|CB665439 OSJNEd11N18.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11N18 5', mRNA sequence
Length = 783
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| |||||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 548 tctcttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 607
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 608 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 667
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 668 gggggcaagacctgcatcctgtc 690
>gb|CB665440.1|CB665440 OSJNEd11N18.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd11N18 3', mRNA sequence
Length = 771
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| |||||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 664 tctcttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 605
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 604 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 545
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 544 gggggcaagacctgcatcctgtc 522
>gb|CB670406.1|CB670406 OSJNEe03H08.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe03H08 3', mRNA sequence
Length = 747
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Minus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| |||||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 631 tctcttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 572
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 571 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 512
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 511 gggggcaagacctgcatcctgtc 489
>dbj|AB073749.1| Oryza sativa (japonica cultivar-group) OsCIN1 mRNA for cell wall
invertase, complete cds
Length = 2203
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| |||||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 1521 tctcttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 1580
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 1581 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 1640
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 1641 gggggcaagacctgcatcctgtc 1663
>gb|AY578158.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 1 mRNA,
complete cds
Length = 2129
Score = 101 bits (51), Expect = 5e-019
Identities = 120/143 (83%)
Strand = Plus / Plus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| |||||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 1476 tctcttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 1535
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 1536 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 1595
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 1596 gggggcaagacctgcatcctgtc 1618
>dbj|AK120779.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023009M11, full
insert sequence
Length = 2289
Score = 99.6 bits (50), Expect = 2e-018
Identities = 137/166 (82%)
Strand = Plus / Plus
Query: 132 ttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtca 191
|||||||||| |||||||| ||||||||||| ||| | |||||||||||||||||| |
Sbjct: 1631 ttgatcgatcactccgtggtggagagcttcggggcgcgcggcaagacgtgcatcctgacg 1690
Query: 192 cgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggc 251
||||||||||| | |||||||| | ||||| ||||||| ||| ||||||||||||
Sbjct: 1691 agggtgtacccgaggaaagccgtcggcgacgacgcgcacctcttcgtcttcaacaacggc 1750
Query: 252 gaggtggacgtcacggtgtccggcctgaccgcctgggagatgaaga 297
||| |||||||| ||| || |||| |||||||||||||||||
Sbjct: 1751 gagtcggacgtcaaggtcaccaacctggacgcctgggagatgaaga 1796
Score = 61.9 bits (31), Expect = 4e-007
Identities = 40/43 (93%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatctcca 108
|||| |||||||||||| ||||||||||||| |||||||||||
Sbjct: 1562 tacaggccgaccttcgccggcttcgtcgacgtcgacatctcca 1604
>ref|XM_472408.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1752
Score = 99.6 bits (50), Expect = 2e-018
Identities = 137/166 (82%)
Strand = Plus / Plus
Query: 132 ttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtca 191
|||||||||| |||||||| ||||||||||| ||| | |||||||||||||||||| |
Sbjct: 1561 ttgatcgatcactccgtggtggagagcttcggggcgcgcggcaagacgtgcatcctgacg 1620
Query: 192 cgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggc 251
||||||||||| | |||||||| | ||||| ||||||| ||| ||||||||||||
Sbjct: 1621 agggtgtacccgaggaaagccgtcggcgacgacgcgcacctcttcgtcttcaacaacggc 1680
Query: 252 gaggtggacgtcacggtgtccggcctgaccgcctgggagatgaaga 297
||| |||||||| ||| || |||| |||||||||||||||||
Sbjct: 1681 gagtcggacgtcaaggtcaccaacctggacgcctgggagatgaaga 1726
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatc 104
|||| |||||||||||| ||||||||||||| |||||||
Sbjct: 1492 tacaggccgaccttcgccggcttcgtcgacgtcgacatc 1530
>gb|AY578160.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 3 mRNA,
complete cds
Length = 1911
Score = 99.6 bits (50), Expect = 2e-018
Identities = 137/166 (82%)
Strand = Plus / Plus
Query: 132 ttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtca 191
|||||||||| |||||||| ||||||||||| ||| | |||||||||||||||||| |
Sbjct: 1597 ttgatcgatcactccgtggtggagagcttcggggcgcgcggcaagacgtgcatcctgacg 1656
Query: 192 cgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggc 251
||||||||||| | |||||||| | ||||| ||||||| ||| ||||||||||||
Sbjct: 1657 agggtgtacccgaggaaagccgtcggcgacgacgcgcacctcttcgtcttcaacaacggc 1716
Query: 252 gaggtggacgtcacggtgtccggcctgaccgcctgggagatgaaga 297
||| |||||||| ||| || |||| |||||||||||||||||
Sbjct: 1717 gagtcggacgtcaaggtcaccaacctggacgcctgggagatgaaga 1762
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatc 104
|||| |||||||||||| ||||||||||||| |||||||
Sbjct: 1528 tacaggccgaccttcgccggcttcgtcgacgtcgacatc 1566
>gb|AACV01009702.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009702, whole
genome shotgun sequence
Length = 11577
Score = 95.6 bits (48), Expect = 3e-017
Identities = 135/164 (82%)
Strand = Plus / Minus
Query: 134 gatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 193
|||||||| |||||||| ||||||||||| ||| | |||||||||||||||||| | |
Sbjct: 7081 gatcgatcactccgtggtggagagcttcggggcgcgcggcaagacgtgcatcctgacgag 7022
Query: 194 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 253
|||||||||| | |||||||| | ||||| ||||||| ||| ||||||||||||||
Sbjct: 7021 ggtgtacccgaggaaagccgtcggcgacgacgcgcacctcttcgtcttcaacaacggcga 6962
Query: 254 ggtggacgtcacggtgtccggcctgaccgcctgggagatgaaga 297
| |||||||| ||| || |||| |||||||||||||||||
Sbjct: 6961 gtcggacgtcaaggtcaccaacctggacgcctgggagatgaaga 6918
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatc 104
|||| |||||||||||| ||||||||||||| |||||||
Sbjct: 7278 tacaggccgaccttcgccggcttcgtcgacgtcgacatc 7240
>ref|NT_107198.1| Oryza sativa (japonica cultivar-group)
Length = 632744
Score = 95.6 bits (48), Expect = 3e-017
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 134 gatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 193
|||||||| |||||||| ||||||||||| ||| | |||||||||||||||||| | |
Sbjct: 154212 gatcgatcactccgtggtggagagcttcggggcgcgcggcaagacgtgcatcctgacgag 154271
Query: 194 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 253
|||||||||| | |||||||| | ||||| ||||||| ||| ||||||||||||||
Sbjct: 154272 ggtgtacccgaggaaagccgtcggcgacgacgcgcacctcttcgtcttcaacaacggcga 154331
Query: 254 ggtggacgtcacggtgtccggcctgaccgcctgggagatgaaga 297
| |||||||| ||| || |||| |||||||||||||||||
Sbjct: 154332 gtcggacgtcaaggtcaccaacctggacgcctgggagatgaaga 154375
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 153 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 212
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 166138 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 166197
Query: 213 gtcgggaaggacgctcacctctacgttttcaacaacgg 250
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 166198 atcggcaagaacgcgcgcctttacgttttcaataacgg 166235
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatc 104
|||| |||||||||||| ||||||||||||| |||||||
Sbjct: 154015 tacaggccgaccttcgccggcttcgtcgacgtcgacatc 154053
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 95.6 bits (48), Expect = 3e-017
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 134 gatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 193
|||||||| |||||||| ||||||||||| ||| | |||||||||||||||||| | |
Sbjct: 10204542 gatcgatcactccgtggtggagagcttcggggcgcgcggcaagacgtgcatcctgacgag 10204601
Query: 194 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 253
|||||||||| | |||||||| | ||||| ||||||| ||| ||||||||||||||
Sbjct: 10204602 ggtgtacccgaggaaagccgtcggcgacgacgcgcacctcttcgtcttcaacaacggcga 10204661
Query: 254 ggtggacgtcacggtgtccggcctgaccgcctgggagatgaaga 297
| |||||||| ||| || |||| |||||||||||||||||
Sbjct: 10204662 gtcggacgtcaaggtcaccaacctggacgcctgggagatgaaga 10204705
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 153 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 212
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 10218098 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 10218157
Query: 213 gtcgggaaggacgctcacctctacgttttcaacaacgg 250
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 10218158 atcggcaagaacgcgcgcctttacgttttcaataacgg 10218195
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatc 104
|||| |||||||||||| ||||||||||||| |||||||
Sbjct: 10204345 tacaggccgaccttcgccggcttcgtcgacgtcgacatc 10204383
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 95.6 bits (48), Expect = 3e-017
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 134 gatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 193
|||||||| |||||||| ||||||||||| ||| | |||||||||||||||||| | |
Sbjct: 17551904 gatcgatcactccgtggtggagagcttcggggcgcgcggcaagacgtgcatcctgacgag 17551963
Query: 194 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 253
|||||||||| | |||||||| | ||||| ||||||| ||| ||||||||||||||
Sbjct: 17551964 ggtgtacccgaggaaagccgtcggcgacgacgcgcacctcttcgtcttcaacaacggcga 17552023
Query: 254 ggtggacgtcacggtgtccggcctgaccgcctgggagatgaaga 297
| |||||||| ||| || |||| |||||||||||||||||
Sbjct: 17552024 gtcggacgtcaaggtcaccaacctggacgcctgggagatgaaga 17552067
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 153 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 212
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 17565460 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 17565519
Query: 213 gtcgggaaggacgctcacctctacgttttcaacaacgg 250
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 17565520 atcggcaagaacgcgcgcctttacgttttcaataacgg 17565557
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatc 104
|||| |||||||||||| ||||||||||||| |||||||
Sbjct: 17551707 tacaggccgaccttcgccggcttcgtcgacgtcgacatc 17551745
>emb|AL662945.3|OSJN00141 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000126_13,
complete sequence
Length = 113960
Score = 95.6 bits (48), Expect = 3e-017
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 134 gatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 193
|||||||| |||||||| ||||||||||| ||| | |||||||||||||||||| | |
Sbjct: 36999 gatcgatcactccgtggtggagagcttcggggcgcgcggcaagacgtgcatcctgacgag 37058
Query: 194 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 253
|||||||||| | |||||||| | ||||| ||||||| ||| ||||||||||||||
Sbjct: 37059 ggtgtacccgaggaaagccgtcggcgacgacgcgcacctcttcgtcttcaacaacggcga 37118
Query: 254 ggtggacgtcacggtgtccggcctgaccgcctgggagatgaaga 297
| |||||||| ||| || |||| |||||||||||||||||
Sbjct: 37119 gtcggacgtcaaggtcaccaacctggacgcctgggagatgaaga 37162
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 153 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 212
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 48925 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 48984
Query: 213 gtcgggaaggacgctcacctctacgttttcaacaacgg 250
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 48985 atcggcaagaacgcgcgcctttacgttttcaataacgg 49022
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatc 104
|||| |||||||||||| ||||||||||||| |||||||
Sbjct: 36802 tacaggccgaccttcgccggcttcgtcgacgtcgacatc 36840
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 95.6 bits (48), Expect = 3e-017
Identities = 135/164 (82%)
Strand = Plus / Plus
Query: 134 gatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtcacg 193
|||||||| |||||||| ||||||||||| ||| | |||||||||||||||||| | |
Sbjct: 20423579 gatcgatcactccgtggtggagagcttcggggcgcgcggcaagacgtgcatcctgacgag 20423638
Query: 194 ggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttcaacaacggcga 253
|||||||||| | |||||||| | ||||| ||||||| ||| ||||||||||||||
Sbjct: 20423639 ggtgtacccgaggaaagccgtcggcgacgacgcgcacctcttcgtcttcaacaacggcga 20423698
Query: 254 ggtggacgtcacggtgtccggcctgaccgcctgggagatgaaga 297
| |||||||| ||| || |||| |||||||||||||||||
Sbjct: 20423699 gtcggacgtcaaggtcaccaacctggacgcctgggagatgaaga 20423742
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 153 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 212
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 20435505 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 20435564
Query: 213 gtcgggaaggacgctcacctctacgttttcaacaacgg 250
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 20435565 atcggcaagaacgcgcgcctttacgttttcaataacgg 20435602
Score = 54.0 bits (27), Expect = 1e-004
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 66 tacaagccgaccttcgcgggcttcgtcgacgccgacatc 104
|||| |||||||||||| ||||||||||||| |||||||
Sbjct: 20423382 tacaggccgaccttcgccggcttcgtcgacgtcgacatc 20423420
>dbj|AK121403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023132A09, full
insert sequence
Length = 2103
Score = 93.7 bits (47), Expect = 1e-016
Identities = 119/143 (83%)
Strand = Plus / Plus
Query: 48 tctcttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctcc 107
|||||||| | |||||| |||||||| || || || || ||||||||| ||||||||||
Sbjct: 1526 tctcttagccaggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcg 1585
Query: 108 agcggcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcg 167
||| |||||| || | ||||||||||| || || || ||||| ||||||||||||||
Sbjct: 1586 tccgggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgcc 1645
Query: 168 ggaggcaagacgtgcatcctgtc 190
|| |||||||| |||||||||||
Sbjct: 1646 gggggcaagacctgcatcctgtc 1668
>gb|CB647639.1|CB647639 OSJNEb10K09.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb10K09 3', mRNA sequence
Length = 659
Score = 85.7 bits (43), Expect = 3e-014
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 52 ttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcg 111
|||| |||||||| |||||||| || || || || || |||||| |||||||||| ||
Sbjct: 641 ttagcccggatctttacaagccaacttttgccgggtttgtcgacaccgacatctcgtccg 582
Query: 112 gcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggag 171
| |||||| || | ||||||||||| || || || ||||| |||||||||||||| || |
Sbjct: 581 ggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgccgggg 522
Query: 172 gcaagacgtgcatcctgtc 190
||||||| |||||||||||
Sbjct: 521 gcaagacctgcatcctgtc 503
>gb|CB656697.1|CB656697 OSJNEc11F13.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11F13 3', mRNA sequence
Length = 760
Score = 85.7 bits (43), Expect = 3e-014
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 52 ttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcg 111
|||| |||||||| |||||||| || || || || ||||||||| |||||||||| ||
Sbjct: 663 ttagcccggatctctacaagccaacttttgccgggttcgtcgacaccgacatctcgtccg 604
Query: 112 gcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggag 171
| |||||| || | ||||||||||| || || || ||||| ||||| |||||||| || |
Sbjct: 603 ggaagatctccttgagaagcttgattgaccgttcggtggttgagagattcggcgccgggg 544
Query: 172 gcaagacgtgcatcctgtc 190
||||||| |||||||||||
Sbjct: 543 gcaagacctgcatcctgtc 525
>gb|CB656757.1|CB656757 OSJNEc11H11.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11H11 3', mRNA sequence
Length = 722
Score = 85.7 bits (43), Expect = 3e-014
Identities = 115/139 (82%)
Strand = Plus / Minus
Query: 52 ttagtccggatctgtacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcg 111
|||| |||||||| |||||||| || || || || || |||||| |||||||||| ||
Sbjct: 662 ttagcccggatctctacaagccaacttttgccgggttagtcgacaccgacatctcgtccg 603
Query: 112 gcaagatcacccttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggag 171
| |||||| || | ||||||||||| || || || ||||| |||||||||||||| || |
Sbjct: 602 ggaagatctccttgagaagcttgattgaccgttcggtggttgagagcttcggcgccgggg 543
Query: 172 gcaagacgtgcatcctgtc 190
||||||| |||||||||||
Sbjct: 542 gcaagacctgcatcctgtc 524
>dbj|AK072276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010O04, full
insert sequence
Length = 2089
Score = 69.9 bits (35), Expect = 2e-009
Identities = 149/187 (79%)
Strand = Plus / Plus
Query: 64 tgtacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccc 123
||||| ||||||| || || || ||||| ||| | |||||| ||| ||| ||||| | |
Sbjct: 1590 tgtaccagccgacgtttgcagggttcgttgacacggacatcaccaacgggaagatatctc 1649
Query: 124 ttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgca 183
| || ||| ||||||| |||| || || ||||||||||| || ||||| ||| ||||||
Sbjct: 1650 tgaggagcctgatcgacaggtcggttgttgagagcttcggggctggaggaaaggcgtgca 1709
Query: 184 tcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttca 243
||||||| ||||||||||||| | ||| |||| ||| |||| | ||| ||||||||||
Sbjct: 1710 tcctgtcgagggtgtacccgtcgctggccatcggcaagaacgcgcgcctttacgttttca 1769
Query: 244 acaacgg 250
| |||||
Sbjct: 1770 ataacgg 1776
>ref|XM_472409.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1788
Score = 69.9 bits (35), Expect = 2e-009
Identities = 149/187 (79%)
Strand = Plus / Plus
Query: 64 tgtacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccc 123
||||| ||||||| || || || ||||| ||| | |||||| ||| ||| ||||| | |
Sbjct: 1529 tgtaccagccgacgtttgcagggttcgttgacacggacatcaccaacgggaagatatctc 1588
Query: 124 ttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgca 183
| || ||| ||||||| |||| || || ||||||||||| || ||||| ||| ||||||
Sbjct: 1589 tgaggagcctgatcgacaggtcggttgttgagagcttcggggctggaggaaaggcgtgca 1648
Query: 184 tcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttca 243
||||||| ||||||||||||| | ||| |||| ||| |||| | ||| ||||||||||
Sbjct: 1649 tcctgtcgagggtgtacccgtcgctggccatcggcaagaacgcgcgcctttacgttttca 1708
Query: 244 acaacgg 250
| |||||
Sbjct: 1709 ataacgg 1715
>gb|AY578159.1| Oryza sativa (japonica cultivar-group) cell-wall invertase 2 mRNA,
complete cds
Length = 1995
Score = 69.9 bits (35), Expect = 2e-009
Identities = 149/187 (79%)
Strand = Plus / Plus
Query: 64 tgtacaagccgaccttcgcgggcttcgtcgacgccgacatctccagcggcaagatcaccc 123
||||| ||||||| || || || ||||| ||| | |||||| ||| ||| ||||| | |
Sbjct: 1583 tgtaccagccgacgtttgcagggttcgttgacacggacatcaccaacgggaagatatctc 1642
Query: 124 ttagaagcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgca 183
| || ||| ||||||| |||| || || ||||||||||| || ||||| ||| ||||||
Sbjct: 1643 tgaggagcctgatcgacaggtcggttgttgagagcttcggggctggaggaaaggcgtgca 1702
Query: 184 tcctgtcacgggtgtacccgtccatcgccgtcgggaaggacgctcacctctacgttttca 243
||||||| ||||||||||||| | ||| |||| ||| |||| | ||| ||||||||||
Sbjct: 1703 tcctgtcgagggtgtacccgtcgctggccatcggcaagaacgcgcgcctttacgttttca 1762
Query: 244 acaacgg 250
| |||||
Sbjct: 1763 ataacgg 1769
>gb|AACV01009704.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009704, whole
genome shotgun sequence
Length = 16702
Score = 67.9 bits (34), Expect = 7e-009
Identities = 82/98 (83%)
Strand = Plus / Minus
Query: 153 gagagcttcggcgcgggaggcaagacgtgcatcctgtcacgggtgtacccgtccatcgcc 212
||||||||||| || ||||| ||| ||||||||||||| ||||||||||||| | |||
Sbjct: 12046 gagagcttcggggctggaggaaaggcgtgcatcctgtcgagggtgtacccgtcgctggcc 11987
Query: 213 gtcgggaaggacgctcacctctacgttttcaacaacgg 250
|||| ||| |||| | ||| ||||||||||| |||||
Sbjct: 11986 atcggcaagaacgcgcgcctttacgttttcaataacgg 11949
>gb|CB638672.1|CB638672 OSJNEa07D22.r OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa07D22 3', mRNA sequence
Length = 579
Score = 58.0 bits (29), Expect = 6e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 130 gcttgatcgatcggtccgtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgt 189
||||||| || || || ||||| |||||||||||||| || |||||||| ||||||||||
Sbjct: 579 gcttgattgaccgttcggtggttgagagcttcggcgccgggggcaagacctgcatcctgt 520
Query: 190 c 190
|
Sbjct: 519 c 519
>gb|AQ509935.1|AQ509935 nbxb0094F09r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0094F09r, DNA sequence
Length = 595
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 190
||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 151 gtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 194
>gb|CB662771.1|CB662771 OSJNEd07B16.r OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd07B16 3', mRNA sequence
Length = 776
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 190
||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 561 gtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 518
>dbj|AP004156.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G07
Length = 149119
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 190
||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 14629 gtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 14672
>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:B1136H02
Length = 145086
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 190
||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 62836 gtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 62879
>gb|AACV01004580.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004580, whole
genome shotgun sequence
Length = 8396
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 190
||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 3691 gtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 3734
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 190
||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 890320 gtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 890363
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 190
||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 6099407 gtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 6099450
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 190
||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 19552471 gtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 19552514
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 56.0 bits (28), Expect = 2e-005
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 147 gtggtcgagagcttcggcgcgggaggcaagacgtgcatcctgtc 190
||||| |||||||||||||| || |||||||| |||||||||||
Sbjct: 19706078 gtggttgagagcttcggcgccgggggcaagacctgcatcctgtc 19706121
>ref|NT_107119.1| Oryza sativa (japonica cultivar-group)
Length = 938023
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 365 tttctttattttcgttcttcttcttcttc 393
||||||||||||| |||||||||||||||
Sbjct: 95294 tttctttattttccttcttcttcttcttc 95266
>gb|AACV01022888.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022888, whole
genome shotgun sequence
Length = 14372
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 365 tttctttattttcgttcttcttcttcttc 393
||||||||||||| |||||||||||||||
Sbjct: 1486 tttctttattttccttcttcttcttcttc 1514
>gb|CH401263.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000100 genomic
scaffold, whole genome shotgun sequence
Length = 6309838
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 365 tttctttattttcgttcttcttcttcttc 393
||||||||||||| |||||||||||||||
Sbjct: 2082118 tttctttattttccttcttcttcttcttc 2082090
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 365 tttctttattttcgttcttcttcttcttc 393
||||||||||||| |||||||||||||||
Sbjct: 9937162 tttctttattttccttcttcttcttcttc 9937134
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 365 tttctttattttcgttcttcttcttcttc 393
||||||||||||| |||||||||||||||
Sbjct: 10905774 tttctttattttccttcttcttcttcttc 10905746
>gb|AC135599.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBb0045P14, complete sequence
Length = 121894
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 365 tttctttattttcgttcttcttcttcttc 393
||||||||||||| |||||||||||||||
Sbjct: 95294 tttctttattttccttcttcttcttcttc 95266
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 50.1 bits (25), Expect = 0.002
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 365 tttctttattttcgttcttcttcttcttc 393
||||||||||||| |||||||||||||||
Sbjct: 10984963 tttctttattttccttcttcttcttcttc 10984935
>gb|AU091974.1|AU091974 AU091974 Rice immature leaf including apical meristem (under long
day condition) Oryza sativa (japonica cultivar-group)
cDNA clone E50295, mRNA sequence
Length = 460
Score = 44.1 bits (22), Expect = 0.094
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 154 agagcttcggcgcgggaggcaagacgtgcatcctgtc 190
|||||||| |||| || |||||||| |||||||||||
Sbjct: 1 agagcttcngcgccgggggcaagacctgcatcctgtc 37
>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 138585
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 376 tcgttcttcttcttcttcgtc 396
|||||||||||||||||||||
Sbjct: 54887 tcgttcttcttcttcttcgtc 54867
>ref|NT_079837.2| Oryza sativa (japonica cultivar-group)
Length = 3671013
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 376 tcgttcttcttcttcttcgtc 396
|||||||||||||||||||||
Sbjct: 712609 tcgttcttcttcttcttcgtc 712589
>gb|AACV01024945.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024945,
whole genome shotgun sequence
Length = 16299
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 376 tcgttcttcttcttcttcgtc 396
|||||||||||||||||||||
Sbjct: 697 tcgttcttcttcttcttcgtc 677
>gb|CH401280.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000117 genomic
scaffold, whole genome shotgun sequence
Length = 1521144
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 376 tcgttcttcttcttcttcgtc 396
|||||||||||||||||||||
Sbjct: 1121327 tcgttcttcttcttcttcgtc 1121307
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 42.1 bits (21), Expect = 0.37
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 376 tcgttcttcttcttcttcgtc 396
|||||||||||||||||||||
Sbjct: 15123188 tcgttcttcttcttcttcgtc 15123168
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,206,200
Number of Sequences: 438736
Number of extensions: 1206200
Number of successful extensions: 45607
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44149
Number of HSP's gapped (non-prelim): 1438
length of query: 661
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 640
effective length of database: 2,791,206,460
effective search space: 1786372134400
effective search space used: 1786372134400
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)