BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921719.2.1
(779 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU031496.1|AU031496 AU031496 Rice cDNA from immature lea... 404 e-110
dbj|AK121395.1| Oryza sativa (japonica cultivar-group) cDNA... 404 e-110
gb|AY583319.1| Oryza sativa (japonica cultivar-group) cycli... 404 e-110
ref|XM_470214.1| Oryza sativa (japonica cultivar-group), p... 404 e-110
gb|CF331570.1|CF331570 NACL--07-L23.g1 Rice callus plasmid ... 402 e-109
gb|CF331569.1|CF331569 NACL--07-L23.b1 Rice callus plasmid ... 398 e-108
gb|CF281335.1|CF281335 14ETL--08-F16.g1 Rice etiolated leaf... 293 7e-077
gb|C97125.1|C97125 C97125 Rice callus Oryza sativa (japonic... 250 1e-063
gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, N... 222 2e-055
gb|AACV01005867.1| Oryza sativa (japonica cultivar-group) c... 222 2e-055
ref|NT_079917.2| Oryza sativa (japonica cultivar-group) 222 2e-055
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 222 2e-055
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 222 2e-055
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 222 2e-055
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 222 2e-055
gb|C97126.1|C97126 C97126 Rice callus Oryza sativa (japonic... 113 1e-022
gb|CF281334.1|CF281334 14ETL--08-F16.b1 Rice etiolated leaf... 82 5e-013
dbj|AP005970.1| Oryza sativa (japonica cultivar-group) chro... 42 0.44
dbj|AB109206.2| Oryza sativa (japonica cultivar-group) geno... 42 0.44
dbj|AP006149.2| Oryza sativa (japonica cultivar-group) geno... 42 0.44
gb|AACV01020470.1| Oryza sativa (japonica cultivar-group) c... 42 0.44
ref|NT_107077.1| Oryza sativa (japonica cultivar-group) 42 0.44
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.44
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 42 0.44
>gb|AU031496.1|AU031496 AU031496 Rice cDNA from immature leaf including apical meristem
Oryza sativa (japonica cultivar-group) cDNA clone
E61736_1A, mRNA sequence
Length = 587
Score = 404 bits (204), Expect = e-110
Identities = 228/236 (96%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 165
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 166 gtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctccgagaacgag 225
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 226 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccggccg 285
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 286 gagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcaggaggc 341
>dbj|AK121395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130M16, full
insert sequence
Length = 642
Score = 404 bits (204), Expect = e-110
Identities = 228/236 (96%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 176
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 177 gtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctccgagaacgag 236
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 237 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccggccg 296
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 297 gagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcaggaggc 352
>gb|AY583319.1| Oryza sativa (japonica cultivar-group) cyclin-dependent kinase
subunit (CKS1) mRNA, complete cds
Length = 273
Score = 404 bits (204), Expect = e-110
Identities = 228/236 (96%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 60
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 61 gtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctccgagaacgag 120
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccggccg 180
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 181 gagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcaggaggc 236
>ref|XM_470214.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 273
Score = 404 bits (204), Expect = e-110
Identities = 228/236 (96%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 60
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
||||| ||||| |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 61 gtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctccgagaacgag 120
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 121 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccggccg 180
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 181 gagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcaggaggc 236
>gb|CF331570.1|CF331570 NACL--07-L23.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--07-L23, mRNA sequence
Length = 572
Score = 402 bits (203), Expect = e-109
Identities = 227/235 (96%)
Strand = Plus / Minus
Query: 99 tgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtcg 158
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 tgggccagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtcg 513
Query: 159 tcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgagt 218
|||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 512 tccttccgccggaggtcgccaagctcctccccaagaatcgccttctctccgagaacgagt 453
Query: 219 ggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccgg 278
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 452 ggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccggccgg 393
Query: 279 agccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 392 agccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcaggaggc 338
>gb|CF331569.1|CF331569 NACL--07-L23.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--07-L23, mRNA sequence
Length = 520
Score = 398 bits (201), Expect = e-108
Identities = 227/236 (96%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 181
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
||||| ||| | |||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 182 gtccttccgncggaggtcgccaagctcctccccaagaatcgccttctctccgagaacgag 241
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 242 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccggccg 301
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 302 gagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcaggaggc 357
>gb|CF281335.1|CF281335 14ETL--08-F16.g1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--08-F16, mRNA sequence
Length = 627
Score = 293 bits (148), Expect = 7e-077
Identities = 214/236 (90%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 115 atgggccagatccagtactccgagaagtactttttttttacctacgagtacaggcacgtc 174
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
||||| ||||| |||||| |||||||||||||| ||||| |||||||||||||||
Sbjct: 175 gtccttccgccggaggtcttttttctcctccccaagaatcgccttctctccgagaacgag 234
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 235 tggcgcgtgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccggccg 294
Query: 278 gagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 295 gagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcaggaggc 350
>gb|C97125.1|C97125 C97125 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52236_1A, mRNA sequence
Length = 284
Score = 250 bits (126), Expect = 1e-063
Identities = 170/184 (92%), Gaps = 2/184 (1%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct: 103 atgggccagatccagnactccgagaagnacttcgacgacacctacgagtacaggcacntc 162
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
||||| ||||| ||| |||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 163 gtccttccgccggag-tcgccaagctcctccccaagaatcgccttctctccgagaacgag 221
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct: 222 tggcgcgcgatcggagtgcagcaga-ncgcgggtgggtncactacgcgatccancggccg 280
Query: 278 gagc 281
||||
Sbjct: 281 gagc 284
>gb|AC090485.3|AC090485 Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0067N01, from chromosome 3, complete sequence
Length = 159636
Score = 222 bits (112), Expect = 2e-055
Identities = 121/124 (97%)
Strand = Plus / Minus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116043 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 115984
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 115983 accggccggagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcagg 115924
Query: 330 aggc 333
||||
Sbjct: 115923 aggc 115920
Score = 99.6 bits (50), Expect = 2e-018
Identities = 53/54 (98%)
Strand = Plus / Minus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116354 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacagg 116301
Score = 95.6 bits (48), Expect = 3e-017
Identities = 60/64 (93%)
Strand = Plus / Minus
Query: 148 caggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctc 207
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 116217 caggcacgtcgtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctc 116158
Query: 208 cgag 211
||||
Sbjct: 116157 cgag 116154
>gb|AACV01005867.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005867, whole
genome shotgun sequence
Length = 94934
Score = 222 bits (112), Expect = 2e-055
Identities = 121/124 (97%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91981 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 92040
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 92041 accggccggagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcagg 92100
Query: 330 aggc 333
||||
Sbjct: 92101 aggc 92104
Score = 99.6 bits (50), Expect = 2e-018
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91670 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacagg 91723
Score = 95.6 bits (48), Expect = 3e-017
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 148 caggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctc 207
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 91807 caggcacgtcgtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctc 91866
Query: 208 cgag 211
||||
Sbjct: 91867 cgag 91870
>ref|NT_079917.2| Oryza sativa (japonica cultivar-group)
Length = 2507935
Score = 222 bits (112), Expect = 2e-055
Identities = 121/124 (97%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966626 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 966685
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 966686 accggccggagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcagg 966745
Query: 330 aggc 333
||||
Sbjct: 966746 aggc 966749
Score = 99.6 bits (50), Expect = 2e-018
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966315 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacagg 966368
Score = 95.6 bits (48), Expect = 3e-017
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 148 caggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctc 207
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 966452 caggcacgtcgtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctc 966511
Query: 208 cgag 211
||||
Sbjct: 966512 cgag 966515
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 222 bits (112), Expect = 2e-055
Identities = 121/124 (97%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2566125 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 2566184
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 2566185 accggccggagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcagg 2566244
Query: 330 aggc 333
||||
Sbjct: 2566245 aggc 2566248
Score = 99.6 bits (50), Expect = 2e-018
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2565814 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacagg 2565867
Score = 95.6 bits (48), Expect = 3e-017
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 148 caggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctc 207
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 2565951 caggcacgtcgtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctc 2566010
Query: 208 cgag 211
||||
Sbjct: 2566011 cgag 2566014
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 222 bits (112), Expect = 2e-055
Identities = 121/124 (97%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758487 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 2758546
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 2758547 accggccggagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcagg 2758606
Query: 330 aggc 333
||||
Sbjct: 2758607 aggc 2758610
Score = 99.6 bits (50), Expect = 2e-018
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2758176 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacagg 2758229
Score = 95.6 bits (48), Expect = 3e-017
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 148 caggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctc 207
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 2758313 caggcacgtcgtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctc 2758372
Query: 208 cgag 211
||||
Sbjct: 2758373 cgag 2758376
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 222 bits (112), Expect = 2e-055
Identities = 121/124 (97%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554161 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 2554220
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 2554221 accggccggagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcagg 2554280
Query: 330 aggc 333
||||
Sbjct: 2554281 aggc 2554284
Score = 99.6 bits (50), Expect = 2e-018
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553850 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacagg 2553903
Score = 95.6 bits (48), Expect = 3e-017
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 148 caggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctc 207
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 2553987 caggcacgtcgtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctc 2554046
Query: 208 cgag 211
||||
Sbjct: 2554047 cgag 2554050
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 222 bits (112), Expect = 2e-055
Identities = 121/124 (97%)
Strand = Plus / Plus
Query: 210 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2554051 agaacgagtggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatcc 2554110
Query: 270 accgcccggagccgcacatcatgctgttccgccgcccgatcaactaccagcagcagcagg 329
|||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 2554111 accggccggagccgcacatcatgctgttccgccgcccgctcaacttccagcagcagcagg 2554170
Query: 330 aggc 333
||||
Sbjct: 2554171 aggc 2554174
Score = 99.6 bits (50), Expect = 2e-018
Identities = 53/54 (98%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553740 atgggccagatccagtactccgagaagtacttcgacgacacctacgagtacagg 2553793
Score = 95.6 bits (48), Expect = 3e-017
Identities = 60/64 (93%)
Strand = Plus / Plus
Query: 148 caggcacgtcgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctc 207
||||||||||||||| ||||| |||||||||||||||||||||||||| ||||| |||||
Sbjct: 2553877 caggcacgtcgtccttccgccggaggtcgccaagctcctccccaagaatcgccttctctc 2553936
Query: 208 cgag 211
||||
Sbjct: 2553937 cgag 2553940
>gb|C97126.1|C97126 C97126 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52236_6Z, mRNA sequence
Length = 429
Score = 113 bits (57), Expect = 1e-022
Identities = 75/80 (93%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 255 tgcactacgcga-tccaccgcccggagccgcacatcatgctgttccgccgcccgatcaac 313
|||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 49 tgcantacgcgaatccaccggccggagccgcacatcatgctgttccgccgcccgctcaac 108
Query: 314 taccagcagcagcaggaggc 333
| ||||||||||||||||||
Sbjct: 109 ttccagcagcagcaggaggc 128
>gb|CF281334.1|CF281334 14ETL--08-F16.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--08-F16, mRNA sequence
Length = 430
Score = 81.8 bits (41), Expect = 5e-013
Identities = 47/49 (95%)
Strand = Plus / Minus
Query: 285 acatcatgctgttccgccgcccgatcaactaccagcagcagcaggaggc 333
||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 430 acatcatgctgttccgccgcccgctcaacttccagcagcagcaggaggc 382
>dbj|AP005970.1| Oryza sativa (japonica cultivar-group) chromosome 9 clone
OSJNBa0087C18, *** SEQUENCING IN PROGRESS ***
Length = 169030
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 312 actaccagcagcagcaggagg 332
|||||||||||||||||||||
Sbjct: 92342 actaccagcagcagcaggagg 92322
>dbj|AB109206.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone: P0478E02
Length = 140715
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 312 actaccagcagcagcaggagg 332
|||||||||||||||||||||
Sbjct: 11370 actaccagcagcagcaggagg 11390
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:B1274F11
Length = 171257
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 312 actaccagcagcagcaggagg 332
|||||||||||||||||||||
Sbjct: 82159 actaccagcagcagcaggagg 82179
>gb|AACV01020470.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020470, whole
genome shotgun sequence
Length = 7939
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 312 actaccagcagcagcaggagg 332
|||||||||||||||||||||
Sbjct: 2165 actaccagcagcagcaggagg 2185
>ref|NT_107077.1| Oryza sativa (japonica cultivar-group)
Length = 1516644
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 312 actaccagcagcagcaggagg 332
|||||||||||||||||||||
Sbjct: 883570 actaccagcagcagcaggagg 883590
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 312 actaccagcagcagcaggagg 332
|||||||||||||||||||||
Sbjct: 10470665 actaccagcagcagcaggagg 10470685
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 312 actaccagcagcagcaggagg 332
|||||||||||||||||||||
Sbjct: 19944476 actaccagcagcagcaggagg 19944496
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 42.1 bits (21), Expect = 0.44
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 312 actaccagcagcagcaggagg 332
|||||||||||||||||||||
Sbjct: 20990070 actaccagcagcagcaggagg 20990090
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,195,927
Number of Sequences: 438736
Number of extensions: 1195927
Number of successful extensions: 10265
Number of sequences better than 0.5: 25
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10047
Number of HSP's gapped (non-prelim): 216
length of query: 779
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 758
effective length of database: 2,791,206,460
effective search space: 2115734496680
effective search space used: 2115734496680
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)