BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805139.2.1
(950 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AU102060.1|AU102060 AU102060 Rice shoot Oryza sativa (ja... 426 e-117
gb|AU102059.1|AU102059 AU102059 Rice shoot Oryza sativa (ja... 391 e-106
dbj|AK058220.1| Oryza sativa (japonica cultivar-group) cDNA... 280 1e-072
dbj|AG206808.1| Oryza sativa (japonica cultivar-group) DNA,... 186 1e-044
emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC O... 186 1e-044
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 186 1e-044
gb|AACV01025027.1| Oryza sativa (japonica cultivar-group) c... 186 1e-044
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 186 1e-044
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 186 1e-044
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 186 1e-044
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 186 1e-044
dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA... 56 4e-005
gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) c... 56 4e-005
ref|XM_473290.1| Oryza sativa (japonica cultivar-group), p... 56 4e-005
ref|NT_079865.2| Oryza sativa (japonica cultivar-group) 56 4e-005
gb|CH401190.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 56 4e-005
emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromoso... 56 4e-005
emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromoso... 56 4e-005
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 56 4e-005
>gb|AU102060.1|AU102060 AU102060 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6194, mRNA sequence
Length = 687
Score = 426 bits (215), Expect = e-117
Identities = 361/410 (88%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 435 tgtgatgccttctcatggtcattctcaagttggctgaagttccccttctctttgatcaac 376
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
|| || |||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 375 tgaatatggtggtgcttgcaatagagcttcccttcgtgtgcgatgtaatttgaggggcta 316
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
|||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 315 atggtgcatcctccatgacagcacttgaagcagcttttgtgatacatggtgttattgaca 256
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||| ||| ||||||||||||||||| ||||||| || ||||||||||| ||||||
Sbjct: 255 gtaaccctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgcca 196
Query: 564 gcaaaggcgcttgagactttagtagcattctcattcccaacgtttctttctggcttgaca 623
||||| ||||| ||||||||| |||||||||||||| |||| || ||||||||||||||
Sbjct: 195 gcaaatgcgctcgagactttaatagcattctcattctcaactgttttttctggcttgaca 136
Query: 624 accttgggagttccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcg 683
||||| ||||||||||| ||||||||||| || || || ||||||||||||||||| ||
Sbjct: 135 acctttggagttccttcaaagctcttgtctaaacttccagtcctcttgaacagctgatca 76
Query: 684 aagtgaggcctgcagtagagcactccctcgaaggagttgtagttggcgag 733
|||||||||||||||||||||||||| || || | ||||||||| |||||
Sbjct: 75 aagtgaggcctgcagtagagcactccttcaaacgngttgtagttcgcgag 26
Score = 56.0 bits (28), Expect = 4e-005
Identities = 87/104 (83%), Gaps = 2/104 (1%)
Strand = Plus / Minus
Query: 99 aaaccaggtagagtatctgactcaaagataacaacgttt-acatgcagatacaagacaac 157
|||||||||||| |||||||| || ||||||| |||| ||| || |||||||| |||
Sbjct: 663 aaaccaggtagacattctgactccaatataacaaggttttacaagcggatacaagccaaa 604
Query: 158 -aatatcattgttctctgaacacacatgacctccattggtaaaa 200
||||| ||||||||||||| |||||||||| |||||| ||||
Sbjct: 603 taatattattgttctctgaatgcacatgaccttcattgggaaaa 560
>gb|AU102059.1|AU102059 AU102059 Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S6194, mRNA sequence
Length = 404
Score = 391 bits (197), Expect = e-106
Identities = 296/329 (89%)
Strand = Plus / Minus
Query: 546 catttctctctggtgccagcaaaggcgcttgagactttagtagcattctcattcccaacg 605
||||||||||| ||||||||||| ||||| ||||||||| |||||||||||||| ||||
Sbjct: 396 catttctctctcgtgccagcaaatgcgctcgagactttaatagcattctcattctcaact 337
Query: 606 tttctttctggcttgacaaccttgggagttccttcgaagctcttgtccaagctccctgtc 665
|| ||||||||||||||||||| ||||||||||| ||||||||||| || || || |||
Sbjct: 336 gttttttctggcttgacaacctttggagttccttcaaagctcttgtctaaacttccagtc 277
Query: 666 ctcttgaacagctggtcgaagtgaggcctgcagtagagcactccctcgaaggagttgtag 725
|||||||||||||| || |||||||||||||||||||||||||| || || |||||||||
Sbjct: 276 ctcttgaacagctgatcaaagtgaggcctgcagtagagcactccttcaaacgagttgtag 217
Query: 726 ttggcgagcttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatg 785
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 216 ttcgcgagcttgagggtgcccttgcaatggtggcaccggaagcaggccttgtggtagacc 157
Query: 786 cggttgtcggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttg 845
| ||||||||||||||||||||| || |||||||||||||||||||| || ||||||||
Sbjct: 156 ctgttgtcggcggtgagcttgtcgaccaggtacaccgtcttgtcgcacgccatgcacttg 97
Query: 846 gtggtcgtcccctggaaggaggtcgccat 874
|| ||||||||||| ||||| ||||||||
Sbjct: 96 gtcgtcgtcccctgaaaggaagtcgccat 68
>dbj|AK058220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-F09, full
insert sequence
Length = 488
Score = 280 bits (141), Expect = 1e-072
Identities = 237/269 (88%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 269 tgtgatgccttctcatggtcattctcaagttggctgaagttccccttctctttgatcaac 210
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
|| || |||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 209 tgaatatggtggtgcttgcaatagagcttcccttcgtgtgcgatgtaatttgaggggcta 150
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
|||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 149 atggtgcatcctccatgacagcacttgaagcagcttttgtgatacatggtgttattgaca 90
Query: 504 gtgaccctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgcca 563
|| ||||| ||| ||||||||||||||||| ||||||| || ||||||||||| ||||||
Sbjct: 89 gtaaccctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgcca 30
Query: 564 gcaaaggcgcttgagactttagtagcatt 592
||||| ||||| ||||||||| |||||||
Sbjct: 29 gcaaatgcgctcgagactttaatagcatt 1
Score = 50.1 bits (25), Expect = 0.002
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand = Plus / Minus
Query: 114 tctgactcaaagataacaacgttt-acatgcagatacaagacaac-aatatcattgttct 171
|||||||| || ||||||| |||| ||| || |||||||| ||| ||||| ||||||||
Sbjct: 482 tctgactccaatataacaaggttttacaagcggatacaagccaaataatattattgttct 423
Query: 172 ctgaacacacatgacctccattggtaaaa 200
||||| |||||||||| |||||| ||||
Sbjct: 422 ctgaatgcacatgaccttcattgggaaaa 394
>dbj|AG206808.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND6021_0_701_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND6021, genomic survey sequence
Length = 441
Score = 186 bits (94), Expect = 1e-044
Identities = 160/182 (87%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 222 tgtgatgccttctcatggtcattctcaagttggctgaagttccccttctctttgatcaac 163
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
|| || |||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 162 tgaatatggtggtgcttgcaatagagcttcccttcgtgtgcgatgtaatttgaggggcta 103
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
|||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 102 atggtgcatcctccatgacagcacttgaagcagcttttgtgatacatggtgttattgaca 43
Query: 504 gt 505
||
Sbjct: 42 gt 41
Score = 50.1 bits (25), Expect = 0.002
Identities = 75/89 (84%), Gaps = 2/89 (2%)
Strand = Plus / Minus
Query: 114 tctgactcaaagataacaacgttt-acatgcagatacaagacaac-aatatcattgttct 171
|||||||| || ||||||| |||| ||| || |||||||| ||| ||||| ||||||||
Sbjct: 435 tctgactccaatataacaaggttttacaagcggatacaagccaaataatattattgttct 376
Query: 172 ctgaacacacatgacctccattggtaaaa 200
||||| |||||||||| |||||| ||||
Sbjct: 375 ctgaatgcacatgaccttcattgggaaaa 347
>emb|AL837527.2|CNS08CAQ Oryza sativa chromosome 12, . BAC OSJNBb0078B20 of library OSJNBb
from chromosome 12 of cultivar Nipponbare of ssp.
japonica of Oryza sativa (rice), complete sequence
Length = 133659
Score = 186 bits (94), Expect = 1e-044
Identities = 160/182 (87%)
Strand = Plus / Plus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 4368 tgtgatgccttctcatggtcattctcaagttggctgaagttccccttctctttgatcaac 4427
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
|| || |||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 4428 tgaatatggtggtgcttgcaatagagcttcccttcgtgtgcgatgtaatttgaggggcta 4487
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
|||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 4488 atggtgcatcctccatgacagcacttgaagcagcttttgtgatacatggtgttattgaca 4547
Query: 504 gt 505
||
Sbjct: 4548 gt 4549
Score = 176 bits (89), Expect = 1e-041
Identities = 128/141 (90%)
Strand = Plus / Plus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
|||||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||
Sbjct: 5815 cttgagggtgcccttgcaatggtggcaccggaagcaggccttgtggtagaccctgttgtc 5874
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||| || |||||||||| |||||
Sbjct: 5875 ggcggtgagcttgtcgaccaggtacaccgtcttgtcgcacgccatgcacttggtcgtcgt 5934
Query: 854 cccctggaaggaggtcgccat 874
|||||| ||||| ||||||||
Sbjct: 5935 cccctgaaaggaagtcgccat 5955
Score = 111 bits (56), Expect = 7e-022
Identities = 89/100 (89%)
Strand = Plus / Plus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
||||| ||||||||||| || || || ||||||||||||||||| || ||||||||||||
Sbjct: 5520 ccttcaaagctcttgtctaaacttccagtcctcttgaacagctgatcaaagtgaggcctg 5579
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
|||||||||||||| || || ||||||||||| |||||||
Sbjct: 5580 cagtagagcactccttcaaacgagttgtagttcgcgagct 5619
Score = 103 bits (52), Expect = 2e-019
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 507 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 566
||||| ||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 4788 accctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagca 4847
Query: 567 aaggcgcttgagactttagtagcattct 594
|| ||||| ||||||||| |||||||||
Sbjct: 4848 aatgcgctcgagactttaatagcattct 4875
Score = 56.0 bits (28), Expect = 4e-005
Identities = 87/104 (83%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 99 aaaccaggtagagtatctgactcaaagataacaacgttt-acatgcagatacaagacaac 157
|||||||||||| |||||||| || ||||||| |||| ||| || |||||||| |||
Sbjct: 4140 aaaccaggtagacattctgactccaatataacaaggttttacaagcggatacaagccaaa 4199
Query: 158 -aatatcattgttctctgaacacacatgacctccattggtaaaa 200
||||| ||||||||||||| |||||||||| |||||| ||||
Sbjct: 4200 taatattattgttctctgaatgcacatgaccttcattgggaaaa 4243
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
||||||| |||| || ||||||||||||||||||| |||||||||
Sbjct: 5374 ctcattctcaactgttttttctggcttgacaacctttggagttcct 5419
>ref|NT_079837.2| Oryza sativa (japonica cultivar-group)
Length = 3671013
Score = 186 bits (94), Expect = 1e-044
Identities = 160/182 (87%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 2032382 tgtgatgccttctcatggtcattctcaagttggctgaagttccccttctctttgatcaac 2032323
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
|| || |||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 2032322 tgaatatggtggtgcttgcaatagagcttcccttcgtgtgcgatgtaatttgaggggcta 2032263
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
|||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 2032262 atggtgcatcctccatgacagcacttgaagcagcttttgtgatacatggtgttattgaca 2032203
Query: 504 gt 505
||
Sbjct: 2032202 gt 2032201
Score = 176 bits (89), Expect = 1e-041
Identities = 128/141 (90%)
Strand = Plus / Minus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
|||||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||
Sbjct: 2030935 cttgagggtgcccttgcaatggtggcaccggaagcaggccttgtggtagaccctgttgtc 2030876
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||| || |||||||||| |||||
Sbjct: 2030875 ggcggtgagcttgtcgaccaggtacaccgtcttgtcgcacgccatgcacttggtcgtcgt 2030816
Query: 854 cccctggaaggaggtcgccat 874
|||||| ||||| ||||||||
Sbjct: 2030815 cccctgaaaggaagtcgccat 2030795
Score = 111 bits (56), Expect = 7e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
||||| ||||||||||| || || || ||||||||||||||||| || ||||||||||||
Sbjct: 2031230 ccttcaaagctcttgtctaaacttccagtcctcttgaacagctgatcaaagtgaggcctg 2031171
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
|||||||||||||| || || ||||||||||| |||||||
Sbjct: 2031170 cagtagagcactccttcaaacgagttgtagttcgcgagct 2031131
Score = 103 bits (52), Expect = 2e-019
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 507 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 566
||||| ||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 2031962 accctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagca 2031903
Query: 567 aaggcgcttgagactttagtagcattct 594
|| ||||| ||||||||| |||||||||
Sbjct: 2031902 aatgcgctcgagactttaatagcattct 2031875
Score = 56.0 bits (28), Expect = 4e-005
Identities = 87/104 (83%), Gaps = 2/104 (1%)
Strand = Plus / Minus
Query: 99 aaaccaggtagagtatctgactcaaagataacaacgttt-acatgcagatacaagacaac 157
|||||||||||| |||||||| || ||||||| |||| ||| || |||||||| |||
Sbjct: 2032610 aaaccaggtagacattctgactccaatataacaaggttttacaagcggatacaagccaaa 2032551
Query: 158 -aatatcattgttctctgaacacacatgacctccattggtaaaa 200
||||| ||||||||||||| |||||||||| |||||| ||||
Sbjct: 2032550 taatattattgttctctgaatgcacatgaccttcattgggaaaa 2032507
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
||||||| |||| || ||||||||||||||||||| |||||||||
Sbjct: 2031376 ctcattctcaactgttttttctggcttgacaacctttggagttcct 2031331
>gb|AACV01025027.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025027, whole
genome shotgun sequence
Length = 109020
Score = 186 bits (94), Expect = 1e-044
Identities = 160/182 (87%)
Strand = Plus / Plus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 8686 tgtgatgccttctcatggtcattctcaagttggctgaagttccccttctctttgatcaac 8745
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
|| || |||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 8746 tgaatatggtggtgcttgcaatagagcttcccttcgtgtgcgatgtaatttgaggggcta 8805
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
|||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 8806 atggtgcatcctccatgacagcacttgaagcagcttttgtgatacatggtgttattgaca 8865
Query: 504 gt 505
||
Sbjct: 8866 gt 8867
Score = 176 bits (89), Expect = 1e-041
Identities = 128/141 (90%)
Strand = Plus / Plus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
|||||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||
Sbjct: 10133 cttgagggtgcccttgcaatggtggcaccggaagcaggccttgtggtagaccctgttgtc 10192
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||| || |||||||||| |||||
Sbjct: 10193 ggcggtgagcttgtcgaccaggtacaccgtcttgtcgcacgccatgcacttggtcgtcgt 10252
Query: 854 cccctggaaggaggtcgccat 874
|||||| ||||| ||||||||
Sbjct: 10253 cccctgaaaggaagtcgccat 10273
Score = 111 bits (56), Expect = 7e-022
Identities = 89/100 (89%)
Strand = Plus / Plus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
||||| ||||||||||| || || || ||||||||||||||||| || ||||||||||||
Sbjct: 9838 ccttcaaagctcttgtctaaacttccagtcctcttgaacagctgatcaaagtgaggcctg 9897
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
|||||||||||||| || || ||||||||||| |||||||
Sbjct: 9898 cagtagagcactccttcaaacgagttgtagttcgcgagct 9937
Score = 103 bits (52), Expect = 2e-019
Identities = 79/88 (89%)
Strand = Plus / Plus
Query: 507 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 566
||||| ||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 9106 accctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagca 9165
Query: 567 aaggcgcttgagactttagtagcattct 594
|| ||||| ||||||||| |||||||||
Sbjct: 9166 aatgcgctcgagactttaatagcattct 9193
Score = 56.0 bits (28), Expect = 4e-005
Identities = 87/104 (83%), Gaps = 2/104 (1%)
Strand = Plus / Plus
Query: 99 aaaccaggtagagtatctgactcaaagataacaacgttt-acatgcagatacaagacaac 157
|||||||||||| |||||||| || ||||||| |||| ||| || |||||||| |||
Sbjct: 8458 aaaccaggtagacattctgactccaatataacaaggttttacaagcggatacaagccaaa 8517
Query: 158 -aatatcattgttctctgaacacacatgacctccattggtaaaa 200
||||| ||||||||||||| |||||||||| |||||| ||||
Sbjct: 8518 taatattattgttctctgaatgcacatgaccttcattgggaaaa 8561
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
||||||| |||| || ||||||||||||||||||| |||||||||
Sbjct: 9692 ctcattctcaactgttttttctggcttgacaacctttggagttcct 9737
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118
genomic scaffold, whole genome shotgun sequence
Length = 3660441
Score = 186 bits (94), Expect = 1e-044
Identities = 160/182 (87%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 853091 tgtgatgccttctcatggtcattctcaagttggctgaagttccccttctctttgatcaac 853032
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
|| || |||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 853031 tgaatatggtggtgcttgcaatagagcttcccttcgtgtgcgatgtaatttgaggggcta 852972
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
|||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 852971 atggtgcatcctccatgacagcacttgaagcagcttttgtgatacatggtgttattgaca 852912
Query: 504 gt 505
||
Sbjct: 852911 gt 852910
Score = 176 bits (89), Expect = 1e-041
Identities = 128/141 (90%)
Strand = Plus / Minus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
|||||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||
Sbjct: 851644 cttgagggtgcccttgcaatggtggcaccggaagcaggccttgtggtagaccctgttgtc 851585
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||| || |||||||||| |||||
Sbjct: 851584 ggcggtgagcttgtcgaccaggtacaccgtcttgtcgcacgccatgcacttggtcgtcgt 851525
Query: 854 cccctggaaggaggtcgccat 874
|||||| ||||| ||||||||
Sbjct: 851524 cccctgaaaggaagtcgccat 851504
Score = 111 bits (56), Expect = 7e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
||||| ||||||||||| || || || ||||||||||||||||| || ||||||||||||
Sbjct: 851939 ccttcaaagctcttgtctaaacttccagtcctcttgaacagctgatcaaagtgaggcctg 851880
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
|||||||||||||| || || ||||||||||| |||||||
Sbjct: 851879 cagtagagcactccttcaaacgagttgtagttcgcgagct 851840
Score = 103 bits (52), Expect = 2e-019
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 507 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 566
||||| ||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 852671 accctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagca 852612
Query: 567 aaggcgcttgagactttagtagcattct 594
|| ||||| ||||||||| |||||||||
Sbjct: 852611 aatgcgctcgagactttaatagcattct 852584
Score = 56.0 bits (28), Expect = 4e-005
Identities = 87/104 (83%), Gaps = 2/104 (1%)
Strand = Plus / Minus
Query: 99 aaaccaggtagagtatctgactcaaagataacaacgttt-acatgcagatacaagacaac 157
|||||||||||| |||||||| || ||||||| |||| ||| || |||||||| |||
Sbjct: 853319 aaaccaggtagacattctgactccaatataacaaggttttacaagcggatacaagccaaa 853260
Query: 158 -aatatcattgttctctgaacacacatgacctccattggtaaaa 200
||||| ||||||||||||| |||||||||| |||||| ||||
Sbjct: 853259 taatattattgttctctgaatgcacatgaccttcattgggaaaa 853216
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
||||||| |||| || ||||||||||||||||||| |||||||||
Sbjct: 852085 ctcattctcaactgttttttctggcttgacaacctttggagttcct 852040
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 186 bits (94), Expect = 1e-044
Identities = 160/182 (87%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 16376196 tgtgatgccttctcatggtcattctcaagttggctgaagttccccttctctttgatcaac 16376137
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
|| || |||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 16376136 tgaatatggtggtgcttgcaatagagcttcccttcgtgtgcgatgtaatttgaggggcta 16376077
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
|||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 16376076 atggtgcatcctccatgacagcacttgaagcagcttttgtgatacatggtgttattgaca 16376017
Query: 504 gt 505
||
Sbjct: 16376016 gt 16376015
Score = 176 bits (89), Expect = 1e-041
Identities = 128/141 (90%)
Strand = Plus / Minus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
|||||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||
Sbjct: 16374749 cttgagggtgcccttgcaatggtggcaccggaagcaggccttgtggtagaccctgttgtc 16374690
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||| || |||||||||| |||||
Sbjct: 16374689 ggcggtgagcttgtcgaccaggtacaccgtcttgtcgcacgccatgcacttggtcgtcgt 16374630
Query: 854 cccctggaaggaggtcgccat 874
|||||| ||||| ||||||||
Sbjct: 16374629 cccctgaaaggaagtcgccat 16374609
Score = 111 bits (56), Expect = 7e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
||||| ||||||||||| || || || ||||||||||||||||| || ||||||||||||
Sbjct: 16375044 ccttcaaagctcttgtctaaacttccagtcctcttgaacagctgatcaaagtgaggcctg 16374985
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
|||||||||||||| || || ||||||||||| |||||||
Sbjct: 16374984 cagtagagcactccttcaaacgagttgtagttcgcgagct 16374945
Score = 103 bits (52), Expect = 2e-019
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 507 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 566
||||| ||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 16375776 accctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagca 16375717
Query: 567 aaggcgcttgagactttagtagcattct 594
|| ||||| ||||||||| |||||||||
Sbjct: 16375716 aatgcgctcgagactttaatagcattct 16375689
Score = 56.0 bits (28), Expect = 4e-005
Identities = 87/104 (83%), Gaps = 2/104 (1%)
Strand = Plus / Minus
Query: 99 aaaccaggtagagtatctgactcaaagataacaacgttt-acatgcagatacaagacaac 157
|||||||||||| |||||||| || ||||||| |||| ||| || |||||||| |||
Sbjct: 16376424 aaaccaggtagacattctgactccaatataacaaggttttacaagcggatacaagccaaa 16376365
Query: 158 -aatatcattgttctctgaacacacatgacctccattggtaaaa 200
||||| ||||||||||||| |||||||||| |||||| ||||
Sbjct: 16376364 taatattattgttctctgaatgcacatgaccttcattgggaaaa 16376321
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
||||||| |||| || ||||||||||||||||||| |||||||||
Sbjct: 16375190 ctcattctcaactgttttttctggcttgacaacctttggagttcct 16375145
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 186 bits (94), Expect = 1e-044
Identities = 160/182 (87%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 19722625 tgtgatgccttctcatggtcattctcaagttggctgaagttccccttctctttgatcaac 19722566
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
|| || |||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 19722565 tgaatatggtggtgcttgcaatagagcttcccttcgtgtgcgatgtaatttgaggggcta 19722506
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
|||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 19722505 atggtgcatcctccatgacagcacttgaagcagcttttgtgatacatggtgttattgaca 19722446
Query: 504 gt 505
||
Sbjct: 19722445 gt 19722444
Score = 176 bits (89), Expect = 1e-041
Identities = 128/141 (90%)
Strand = Plus / Minus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
|||||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||
Sbjct: 19721178 cttgagggtgcccttgcaatggtggcaccggaagcaggccttgtggtagaccctgttgtc 19721119
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||| || |||||||||| |||||
Sbjct: 19721118 ggcggtgagcttgtcgaccaggtacaccgtcttgtcgcacgccatgcacttggtcgtcgt 19721059
Query: 854 cccctggaaggaggtcgccat 874
|||||| ||||| ||||||||
Sbjct: 19721058 cccctgaaaggaagtcgccat 19721038
Score = 111 bits (56), Expect = 7e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
||||| ||||||||||| || || || ||||||||||||||||| || ||||||||||||
Sbjct: 19721473 ccttcaaagctcttgtctaaacttccagtcctcttgaacagctgatcaaagtgaggcctg 19721414
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
|||||||||||||| || || ||||||||||| |||||||
Sbjct: 19721413 cagtagagcactccttcaaacgagttgtagttcgcgagct 19721374
Score = 103 bits (52), Expect = 2e-019
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 507 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 566
||||| ||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 19722205 accctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagca 19722146
Query: 567 aaggcgcttgagactttagtagcattct 594
|| ||||| ||||||||| |||||||||
Sbjct: 19722145 aatgcgctcgagactttaatagcattct 19722118
Score = 56.0 bits (28), Expect = 4e-005
Identities = 87/104 (83%), Gaps = 2/104 (1%)
Strand = Plus / Minus
Query: 99 aaaccaggtagagtatctgactcaaagataacaacgttt-acatgcagatacaagacaac 157
|||||||||||| |||||||| || ||||||| |||| ||| || |||||||| |||
Sbjct: 19722853 aaaccaggtagacattctgactccaatataacaaggttttacaagcggatacaagccaaa 19722794
Query: 158 -aatatcattgttctctgaacacacatgacctccattggtaaaa 200
||||| ||||||||||||| |||||||||| |||||| ||||
Sbjct: 19722793 taatattattgttctctgaatgcacatgaccttcattgggaaaa 19722750
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
||||||| |||| || ||||||||||||||||||| |||||||||
Sbjct: 19721619 ctcattctcaactgttttttctggcttgacaacctttggagttcct 19721574
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 186 bits (94), Expect = 1e-044
Identities = 160/182 (87%)
Strand = Plus / Minus
Query: 324 tgtgatgtcttctcgtggtcattctcaagctggctgaagttccccttctccttgatcagc 383
||||||| |||||| |||||||||||||| |||||||||||||||||||| ||||||| |
Sbjct: 19648839 tgtgatgccttctcatggtcattctcaagttggctgaagttccccttctctttgatcaac 19648780
Query: 384 tggatgtggtggtgcttgcagtacagcttcccctcgtgcgcaatgtagttagaagggctg 443
|| || |||||||||||||| || |||||||| ||||| || ||||| || || |||||
Sbjct: 19648779 tgaatatggtggtgcttgcaatagagcttcccttcgtgtgcgatgtaatttgaggggcta 19648720
Query: 444 atggtgcaccctccatggcagcacttgaagcagctcttgtggtacatagtgttattaaca 503
|||||||| |||||||| ||||||||||||||||| ||||| ||||| |||||||| |||
Sbjct: 19648719 atggtgcatcctccatgacagcacttgaagcagcttttgtgatacatggtgttattgaca 19648660
Query: 504 gt 505
||
Sbjct: 19648659 gt 19648658
Score = 176 bits (89), Expect = 1e-041
Identities = 128/141 (90%)
Strand = Plus / Minus
Query: 734 cttgagggtgcccttgcagtggtggcagcggaagcaggccttgtggtagatgcggttgtc 793
|||||||||||||||||| |||||||| |||||||||||||||||||||| | ||||||
Sbjct: 19647392 cttgagggtgcccttgcaatggtggcaccggaagcaggccttgtggtagaccctgttgtc 19647333
Query: 794 ggcggtgagcttgtccacaaggtacaccgtcttgtcgcaggcggtgcacttggtggtcgt 853
||||||||||||||| || |||||||||||||||||||| || |||||||||| |||||
Sbjct: 19647332 ggcggtgagcttgtcgaccaggtacaccgtcttgtcgcacgccatgcacttggtcgtcgt 19647273
Query: 854 cccctggaaggaggtcgccat 874
|||||| ||||| ||||||||
Sbjct: 19647272 cccctgaaaggaagtcgccat 19647252
Score = 111 bits (56), Expect = 7e-022
Identities = 89/100 (89%)
Strand = Plus / Minus
Query: 636 ccttcgaagctcttgtccaagctccctgtcctcttgaacagctggtcgaagtgaggcctg 695
||||| ||||||||||| || || || ||||||||||||||||| || ||||||||||||
Sbjct: 19647687 ccttcaaagctcttgtctaaacttccagtcctcttgaacagctgatcaaagtgaggcctg 19647628
Query: 696 cagtagagcactccctcgaaggagttgtagttggcgagct 735
|||||||||||||| || || ||||||||||| |||||||
Sbjct: 19647627 cagtagagcactccttcaaacgagttgtagttcgcgagct 19647588
Score = 103 bits (52), Expect = 2e-019
Identities = 79/88 (89%)
Strand = Plus / Minus
Query: 507 accctctcagttggatagactgtcttgctgcatccaacacatttctctctggtgccagca 566
||||| ||| ||||||||||||||||| ||||||| || ||||||||||| |||||||||
Sbjct: 19648419 accctttcaattggatagactgtcttgttgcatcccacgcatttctctctcgtgccagca 19648360
Query: 567 aaggcgcttgagactttagtagcattct 594
|| ||||| ||||||||| |||||||||
Sbjct: 19648359 aatgcgctcgagactttaatagcattct 19648332
Score = 56.0 bits (28), Expect = 4e-005
Identities = 87/104 (83%), Gaps = 2/104 (1%)
Strand = Plus / Minus
Query: 99 aaaccaggtagagtatctgactcaaagataacaacgttt-acatgcagatacaagacaac 157
|||||||||||| |||||||| || ||||||| |||| ||| || |||||||| |||
Sbjct: 19649067 aaaccaggtagacattctgactccaatataacaaggttttacaagcggatacaagccaaa 19649008
Query: 158 -aatatcattgttctctgaacacacatgacctccattggtaaaa 200
||||| ||||||||||||| |||||||||| |||||| ||||
Sbjct: 19649007 taatattattgttctctgaatgcacatgaccttcattgggaaaa 19648964
Score = 52.0 bits (26), Expect = 6e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 593 ctcattcccaacgtttctttctggcttgacaaccttgggagttcct 638
||||||| |||| || ||||||||||||||||||| |||||||||
Sbjct: 19647833 ctcattctcaactgttttttctggcttgacaacctttggagttcct 19647788
>dbj|AK069907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034M24, full
insert sequence
Length = 955
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 448 tgcaccctccatggcagcacttgaagcagctcttgtggta 487
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 476 tgcagcctccatgagagcacttgaagcagctcttgtggta 437
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 459 tggcagcacttgaagcagctcttgtggtac 488
|||| ||||||||||||| |||||||||||
Sbjct: 180 tggctgcacttgaagcaggtcttgtggtac 151
>gb|AACV01010174.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg010174, whole
genome shotgun sequence
Length = 20753
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 448 tgcaccctccatggcagcacttgaagcagctcttgtggta 487
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 9216 tgcagcctccatgagagcacttgaagcagctcttgtggta 9177
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 459 tggcagcacttgaagcagctcttgtggtac 488
|||| ||||||||||||| |||||||||||
Sbjct: 8308 tggctgcacttgaagcaggtcttgtggtac 8279
>ref|XM_473290.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 606
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 448 tgcaccctccatggcagcacttgaagcagctcttgtggta 487
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 412 tgcagcctccatgagagcacttgaagcagctcttgtggta 373
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 459 tggcagcacttgaagcagctcttgtggtac 488
|||| ||||||||||||| |||||||||||
Sbjct: 116 tggctgcacttgaagcaggtcttgtggtac 87
>ref|NT_079865.2| Oryza sativa (japonica cultivar-group)
Length = 3674553
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 448 tgcaccctccatggcagcacttgaagcagctcttgtggta 487
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 371515 tgcagcctccatgagagcacttgaagcagctcttgtggta 371554
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 459 tggcagcacttgaagcagctcttgtggtac 488
|||| ||||||||||||| |||||||||||
Sbjct: 372423 tggctgcacttgaagcaggtcttgtggtac 372452
>gb|CH401190.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000027 genomic
scaffold, whole genome shotgun sequence
Length = 13167135
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 448 tgcaccctccatggcagcacttgaagcagctcttgtggta 487
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 4426715 tgcagcctccatgagagcacttgaagcagctcttgtggta 4426754
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 459 tggcagcacttgaagcagctcttgtggtac 488
|||| ||||||||||||| |||||||||||
Sbjct: 4427623 tggctgcacttgaagcaggtcttgtggtac 4427652
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 448 tgcaccctccatggcagcacttgaagcagctcttgtggta 487
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 23570814 tgcagcctccatgagagcacttgaagcagctcttgtggta 23570853
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 459 tggcagcacttgaagcagctcttgtggtac 488
|||| ||||||||||||| |||||||||||
Sbjct: 23571722 tggctgcacttgaagcaggtcttgtggtac 23571751
>emb|AL663006.3|OSJN00204 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0039L24,
complete sequence
Length = 121056
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 448 tgcaccctccatggcagcacttgaagcagctcttgtggta 487
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 34489 tgcagcctccatgagagcacttgaagcagctcttgtggta 34528
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 459 tggcagcacttgaagcagctcttgtggtac 488
|||| ||||||||||||| |||||||||||
Sbjct: 35397 tggctgcacttgaagcaggtcttgtggtac 35426
>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
complete sequence
Length = 140454
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 448 tgcaccctccatggcagcacttgaagcagctcttgtggta 487
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 131817 tgcagcctccatgagagcacttgaagcagctcttgtggta 131856
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 459 tggcagcacttgaagcagctcttgtggtac 488
|||| ||||||||||||| |||||||||||
Sbjct: 132725 tggctgcacttgaagcaggtcttgtggtac 132754
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 56.0 bits (28), Expect = 4e-005
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 448 tgcaccctccatggcagcacttgaagcagctcttgtggta 487
|||| |||||||| |||||||||||||||||||||||||
Sbjct: 26594931 tgcagcctccatgagagcacttgaagcagctcttgtggta 26594970
Score = 44.1 bits (22), Expect = 0.14
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 459 tggcagcacttgaagcagctcttgtggtac 488
|||| ||||||||||||| |||||||||||
Sbjct: 26595839 tggctgcacttgaagcaggtcttgtggtac 26595868
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,386,248
Number of Sequences: 438736
Number of extensions: 1386248
Number of successful extensions: 8964
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8774
Number of HSP's gapped (non-prelim): 182
length of query: 950
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 929
effective length of database: 2,791,206,460
effective search space: 2593030801340
effective search space used: 2593030801340
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 22 (44.1 bits)