BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK13d03.yg.3.1
(2611 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF003473.1|BF003473 EST431971 KV1 Medicago truncatula cD... 127 5e-027
gb|BF650594.1|BF650594 NF090H09EC1F1078 Elicited cell cultu... 115 2e-023
gb|AW736430.1|AW736430 EST332444 KV3 Medicago truncatula cD... 111 3e-022
gb|BG587866.1|BG587866 EST489641 KV3 Medicago truncatula cD... 111 3e-022
gb|AC148816.3| Medicago truncatula chromosome 7 BAC clone m... 74 7e-011
emb|CR322166.1| mte1-49K24FM1 BAC end, cultivar Jemalong A1... 58 4e-006
emb|CT033766.1| Medicago truncatula chromosome 5 clone mth4... 52 2e-004
emb|CR322750.1| mte1-5C8RM1 BAC end, cultivar Jemalong A17 ... 44 0.059
>gb|BF003473.1|BF003473 EST431971 KV1 Medicago truncatula cDNA clone pKV1-5P18, mRNA
sequence
Length = 802
Score = 127 bits (64), Expect = 5e-027
Identities = 151/180 (83%)
Strand = Plus / Plus
Query: 764 aaagctactattttccctcacaacgtcgggcttggagctaccagggaccctgacctcgtt 823
||||| |||||||| |||||||| | |||||||||||||||||||||||||| || ||
Sbjct: 590 aaagcaactatttttcctcacaatatagggcttggagctaccagggaccctgaactagtc 649
Query: 824 aagagaattggagaagcaactgctcttgaagttagagctactggaattccttacgccttt 883
||||||||||||| |||||||| |||||||||||||| || ||||||| || | |||
Sbjct: 650 aagagaattggagctgcaactgcacttgaagttagagcaacaggaattcaatatgttttt 709
Query: 884 gctccctgtatagcggtctgtagagatccaagatggggacgctgctatgagagctacagt 943
|| || ||| |||| ||||||||| |||| |||||||| | || ||||| |||||||||
Sbjct: 710 gcaccttgtgtagcagtctgtagaaatccgagatggggtaggtgttatgaaagctacagt 769
>gb|BF650594.1|BF650594 NF090H09EC1F1078 Elicited cell culture Medicago truncatula cDNA
clone NF090H09EC 5', mRNA sequence
Length = 659
Score = 115 bits (58), Expect = 2e-023
Identities = 133/158 (84%)
Strand = Plus / Plus
Query: 764 aaagctactattttccctcacaacgtcgggcttggagctaccagggaccctgacctcgtt 823
|||||||||||||| |||||||| || || || |||||||| ||||||||| | || ||
Sbjct: 408 aaagctactatttttcctcacaatgttggtctaggagctacaagggaccctcaactagtg 467
Query: 824 aagagaattggagaagcaactgctcttgaagttagagctactggaattccttacgccttt 883
|||| ||||| || |||||||||||||||| |||||| ||||||||||| || | |||
Sbjct: 468 aagaagattggtgatgcaactgctcttgaagctagagcaactggaattccatatgtcttc 527
Query: 884 gctccctgtatagcggtctgtagagatccaagatgggg 921
|| || || || ||||| ||||||||||||||||||||
Sbjct: 528 gcgccttgcattgcggtgtgtagagatccaagatgggg 565
>gb|AW736430.1|AW736430 EST332444 KV3 Medicago truncatula cDNA clone pKV3-13I22, mRNA
sequence
Length = 562
Score = 111 bits (56), Expect = 3e-022
Identities = 137/164 (83%)
Strand = Plus / Plus
Query: 758 gtctacaaagctactattttccctcacaacgtcgggcttggagctaccagggaccctgac 817
||||| |||||||||||||| |||||||| || || | |||||||| ||||||||| |
Sbjct: 295 gtctataaagctactatttttcctcacaatgttggtttaggagctacaagggaccctcaa 354
Query: 818 ctcgttaagagaattggagaagcaactgctcttgaagttagagctactggaattccttac 877
|| || |||| ||||| |||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 355 ctagtgaagaagattggtgaagcaactgctcttgaatccagagcaactggaattccatat 414
Query: 878 gcctttgctccctgtatagcggtctgtagagatccaagatgggg 921
| |||||| || || || ||||| ||||||||||||||||||||
Sbjct: 415 gtctttgcgccttgcattgcggtgtgtagagatccaagatgggg 458
>gb|BG587866.1|BG587866 EST489641 KV3 Medicago truncatula cDNA clone pKV3-13I22 5' end,
mRNA sequence
Length = 798
Score = 111 bits (56), Expect = 3e-022
Identities = 137/164 (83%)
Strand = Plus / Plus
Query: 758 gtctacaaagctactattttccctcacaacgtcgggcttggagctaccagggaccctgac 817
||||| |||||||||||||| |||||||| || || | |||||||| ||||||||| |
Sbjct: 307 gtctataaagctactatttttcctcacaatgttggtttaggagctacaagggaccctcaa 366
Query: 818 ctcgttaagagaattggagaagcaactgctcttgaagttagagctactggaattccttac 877
|| || |||| ||||| |||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 367 ctagtgaagaagattggtgaagcaactgctcttgaatccagagcaactggaattccatat 426
Query: 878 gcctttgctccctgtatagcggtctgtagagatccaagatgggg 921
| |||||| || || || ||||| ||||||||||||||||||||
Sbjct: 427 gtctttgcgccttgcattgcggtgtgtagagatccaagatgggg 470
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1064 aagcactatgtcggtgatggtggaac 1089
||||||| ||||||||||||||||||
Sbjct: 616 aagcactttgtcggtgatggtggaac 641
>gb|AC148816.3| Medicago truncatula chromosome 7 BAC clone mth2-16i24, complete
sequence
Length = 123655
Score = 73.8 bits (37), Expect = 7e-011
Identities = 58/65 (89%)
Strand = Plus / Minus
Query: 806 agggaccctgacctcgttaagagaattggagaagcaactgctcttgaagttagagctact 865
||||||||||| || || ||||||||||||| ||||||||| |||||||||||||| ||
Sbjct: 80099 agggaccctgaactagtgaagagaattggagcagcaactgcgcttgaagttagagcaaca 80040
Query: 866 ggaat 870
|||||
Sbjct: 80039 ggaat 80035
Score = 69.9 bits (35), Expect = 1e-009
Identities = 59/67 (88%)
Strand = Plus / Minus
Query: 806 agggaccctgacctcgttaagagaattggagaagcaactgctcttgaagttagagctact 865
||||||||||| || || ||||||||||||| |||||||| |||||||||||||| ||
Sbjct: 72107 agggaccctgaactagtcaagagaattggagctgcaactgcacttgaagttagagcaaca 72048
Query: 866 ggaattc 872
|||||||
Sbjct: 72047 ggaattc 72041
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 902 tgtagagatccaagatggggacgctgctatgagagctacagtgaggatcc 951
|||||||||||||||||||| || || || || ||||||||||| |||||
Sbjct: 79929 tgtagagatccaagatggggtcggtgttacgaaagctacagtgaagatcc 79880
Score = 50.1 bits (25), Expect = 0.001
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 764 aaagctactattttccctcacaacgtcgggcttggagctaccagg 808
||||| |||||||| |||||||| | ||||||||||||||||||
Sbjct: 72298 aaagcaactatttttcctcacaatatagggcttggagctaccagg 72254
Score = 48.1 bits (24), Expect = 0.004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 761 tacaaagctactattttccctcacaacgtcgggcttggagctaccagg 808
|||||||| |||||||| |||||||| | ||||| ||||||||||||
Sbjct: 80451 tacaaagcaactatttttcctcacaatattgggctgggagctaccagg 80404
>emb|CR322166.1| mte1-49K24FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 674
Score = 58.0 bits (29), Expect = 4e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 805 cagggaccctgacctcgttaagagaattggagaagcaactgctcttgaagttagagctac 864
|||||||||| | || || |||| ||||| || |||||||||||||||| |||||| ||
Sbjct: 515 cagggaccctcaactagtgaagaagattggtgatgcaactgctcttgaagctagagcaac 574
Query: 865 tggaattcc 873
|||||||||
Sbjct: 575 tggaattcc 583
>emb|CT033766.1| Medicago truncatula chromosome 5 clone mth4-42c9, WORKING DRAFT SEQUENCE
Length = 235225
Score = 52.0 bits (26), Expect = 2e-004
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1285 gggttttgtgatttccgactgggagggcattgat 1318
||||||||||||||| ||||||||||| ||||||
Sbjct: 147557 gggttttgtgatttctgactgggagggaattgat 147590
Score = 52.0 bits (26), Expect = 2e-004
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 1285 gggttttgtgatttccgactgggagggcattgat 1318
||||||||||||||| ||||||||||| ||||||
Sbjct: 118483 gggttttgtgatttctgactgggagggaattgat 118450
Score = 42.1 bits (21), Expect = 0.23
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 898 ggtctgtagagatccaagatggggacgctgctatgagagctacag 942
|||||| | |||||| ||||||||| | ||||||||||| |||||
Sbjct: 146760 ggtctgcaaagatcccagatggggaagatgctatgagagttacag 146804
>emb|CR322750.1| mte1-5C8RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 560
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1064 aagcactatgtcggtgatggtggaac 1089
||||||| ||||||||||||||||||
Sbjct: 479 aagcactttgtcggtgatggtggaac 504
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 330,350
Number of Sequences: 392609
Number of extensions: 330350
Number of successful extensions: 23212
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23181
Number of HSP's gapped (non-prelim): 31
length of query: 2611
length of database: 441,732,993
effective HSP length: 20
effective length of query: 2591
effective length of database: 433,880,813
effective search space: 1124185186483
effective search space used: 1124185186483
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)