BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5735869.2.1
(539 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC153003.14| Medicago truncatula clone mth2-96o5, comple... 40 0.19
gb|AC174319.2| Medicago truncatula clone mth2-179i3, WORKIN... 40 0.19
>gb|AC153003.14| Medicago truncatula clone mth2-96o5, complete sequence
Length = 93881
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 380 gtttatcatcaccgtcactatcaa 403
||||||||||| ||||||||||||
Sbjct: 4510 gtttatcatcaacgtcactatcaa 4533
>gb|AC174319.2| Medicago truncatula clone mth2-179i3, WORKING DRAFT SEQUENCE, 5
unordered pieces
Length = 87930
Score = 40.1 bits (20), Expect = 0.19
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 380 gtttatcatcaccgtcactatcaa 403
||||||||||| ||||||||||||
Sbjct: 34455 gtttatcatcaacgtcactatcaa 34432
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 187,161
Number of Sequences: 392609
Number of extensions: 187161
Number of successful extensions: 12309
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12301
Number of HSP's gapped (non-prelim): 8
length of query: 539
length of database: 441,732,993
effective HSP length: 19
effective length of query: 520
effective length of database: 434,273,422
effective search space: 225822179440
effective search space used: 225822179440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)