BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3345642.2.1
(600 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW981266.1|AW981266 EST392419 DSIL Medicago truncatula c... 44 0.013
gb|BE205173.1|BE205173 EST397849 KV0 Medicago truncatula cD... 44 0.013
gb|AL369437.1|AL369437 MtBA31B01R1 MtBA Medicago truncatula... 44 0.013
gb|CA918792.1|CA918792 EST636510 MTUS Medicago truncatula c... 44 0.013
gb|CF068061.1|CF068061 EST668782 MTUS Medicago truncatula c... 44 0.013
gb|AC146721.7| Medicago truncatula clone mth2-145n10, compl... 44 0.013
>gb|AW981266.1|AW981266 EST392419 DSIL Medicago truncatula cDNA clone pDSIL-12F23, mRNA
sequence
Length = 667
Score = 44.1 bits (22), Expect = 0.013
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
|||||||||| | || || ||||||||||||||||| |||||
Sbjct: 170 tgctgctgttattcattacaatggaaacatgaaaccttggct 211
>gb|BE205173.1|BE205173 EST397849 KV0 Medicago truncatula cDNA clone pKV0-20H11, mRNA
sequence
Length = 585
Score = 44.1 bits (22), Expect = 0.013
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
|||||||||| | || || ||||||||||||||||| |||||
Sbjct: 496 tgctgctgttattcattacaatggaaacatgaaaccttggct 455
>gb|AL369437.1|AL369437 MtBA31B01R1 MtBA Medicago truncatula cDNA clone MtBA31B01 T7, mRNA
sequence
Length = 510
Score = 44.1 bits (22), Expect = 0.013
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
|||||||||| | || || ||||||||||||||||| |||||
Sbjct: 8 tgctgctgttattcattacaatggaaacatgaaaccttggct 49
>gb|CA918792.1|CA918792 EST636510 MTUS Medicago truncatula cDNA clone MTUS-3C6, mRNA
sequence
Length = 667
Score = 44.1 bits (22), Expect = 0.013
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
|||||||||| | || || ||||||||||||||||| |||||
Sbjct: 483 tgctgctgttattcattacaatggaaacatgaaaccttggct 442
>gb|CF068061.1|CF068061 EST668782 MTUS Medicago truncatula cDNA clone MTUS-3C6, mRNA
sequence
Length = 605
Score = 44.1 bits (22), Expect = 0.013
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
|||||||||| | || || ||||||||||||||||| |||||
Sbjct: 109 tgctgctgttattcattacaatggaaacatgaaaccttggct 150
>gb|AC146721.7| Medicago truncatula clone mth2-145n10, complete sequence
Length = 133097
Score = 44.1 bits (22), Expect = 0.013
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
|||||||||| | || || ||||||||||||||||| |||||
Sbjct: 46463 tgctgctgttattcattacaatggaaacatgaaaccttggct 46422
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,303
Number of Sequences: 392609
Number of extensions: 156303
Number of successful extensions: 12067
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12058
Number of HSP's gapped (non-prelim): 9
length of query: 600
length of database: 441,732,993
effective HSP length: 19
effective length of query: 581
effective length of database: 434,273,422
effective search space: 252312858182
effective search space used: 252312858182
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)