BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2921719.2.1
(779 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW287922.2|AW287922 N100766e rootphos(-) Medicago trunca... 100 3e-019
gb|AL389731.1|AL389731 MtBC57A11F1 MtBC Medicago truncatula... 100 3e-019
gb|AJ502939.1|AJ502939 AJ502939 MTAMP Medicago truncatula c... 100 3e-019
gb|AL383638.1|AL383638 MtBC15F07F1 MtBC Medicago truncatula... 94 2e-017
gb|AJ498781.1|AJ498781 AJ498781 MTPOSE Medicago truncatula ... 86 5e-015
gb|AL366930.1|AL366930 MtBA11A12F1 MtBA Medicago truncatula... 72 8e-011
emb|CR313071.1| mte1-35P14RM1 BAC end, cultivar Jemalong A1... 68 1e-009
emb|CR323648.1| mte1-50B19FM1 BAC end, cultivar Jemalong A1... 50 3e-004
>gb|AW287922.2|AW287922 N100766e rootphos(-) Medicago truncatula cDNA clone MHRP-11B4, mRNA
sequence
Length = 539
Score = 99.6 bits (50), Expect = 3e-019
Identities = 131/158 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| ||
Sbjct: 55 atgggtcagatccagtactctgagaagtatttcgatgacacttatgagtacaggcatgtt 114
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || ||||| || ||| | || |||||||| || || ||||| || || ||
Sbjct: 115 gttcttcctccagaggttgcgaagttgcttcccaagaatcgacttctctctgaaaatgaa 174
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggt 255
|||||||| || ||||||||||||||||| || |||||
Sbjct: 175 tggcgcgcaattggagtgcagcagagccgtggctgggt 212
>gb|AL389731.1|AL389731 MtBC57A11F1 MtBC Medicago truncatula cDNA clone MtBC57A11 T3, mRNA
sequence
Length = 492
Score = 99.6 bits (50), Expect = 3e-019
Identities = 131/158 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| ||
Sbjct: 40 atgggtcagatccagtactctgagaagtatttcgatgacacttatgagtacaggcatgtt 99
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || ||||| || ||| | || |||||||| || || ||||| || || ||
Sbjct: 100 gttcttcctccagaggttgcgaagttgcttcccaagaatcgacttctctctgaaaatgaa 159
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggt 255
|||||||| || ||||||||||||||||| || |||||
Sbjct: 160 tggcgcgcaattggagtgcagcagagccgtggctgggt 197
>gb|AJ502939.1|AJ502939 AJ502939 MTAMP Medicago truncatula cDNA clone mtgmadc120027e09,
mRNA sequence
Length = 578
Score = 99.6 bits (50), Expect = 3e-019
Identities = 131/158 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| ||
Sbjct: 68 atgggtcagatccagtactctgagaagtatttcgatgacacttatgagtacaggcatgtt 127
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || ||||| || ||| | || |||||||| || || ||||| || || ||
Sbjct: 128 gttcttcctccagaggttgcgaagttgcttcccaagaatcgacttctctctgaaaatgaa 187
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggt 255
|||||||| || ||||||||||||||||| || |||||
Sbjct: 188 tggcgcgcaattggagtgcagcagagccgtggctgggt 225
>gb|AL383638.1|AL383638 MtBC15F07F1 MtBC Medicago truncatula cDNA clone MtBC15F07 T3, mRNA
sequence
Length = 482
Score = 93.7 bits (47), Expect = 2e-017
Identities = 130/158 (82%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggcacgtc 157
|||||||||||||||||||| |||||||| ||||| ||||| || ||||||||||| ||
Sbjct: 48 atgggtcagatccagtactctgagaagtatttcgatgacacttatgagtacaggcatgtt 107
Query: 158 gtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacgag 217
|| || || || ||||| || ||| | || |||||||| || || ||||| || || ||
Sbjct: 108 gttcttcctccagaggttgcgaagttgcttcccaagaatcgacttctctctgaaaatgaa 167
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggt 255
|||||||| || ||||||||||| ||||| || |||||
Sbjct: 168 tggcgcgcaattggagtgcagcanagccgtggctgggt 205
>gb|AJ498781.1|AJ498781 AJ498781 MTPOSE Medicago truncatula cDNA clone mt--acc955208f02,
mRNA sequence
Length = 425
Score = 85.7 bits (43), Expect = 5e-015
Identities = 131/159 (82%), Gaps = 1/159 (0%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccga-gaagtacttcgacgacacctacgagtacaggcacgt 156
|||||||||||||||||||| || |||||| ||||| ||||| || ||||||||||| ||
Sbjct: 67 atgggtcagatccagtactctgacgaagtatttcgatgacacttatgagtacaggcatgt 126
Query: 157 cgtcctcccgcccgaggtcgccaagctcctccccaagaaccgcctcctctccgagaacga 216
|| || || || ||||| || ||| | || |||||||| || || ||||| || || ||
Sbjct: 127 tgttcttcctccagaggttgcgaagttgcttcccaagaatcgacttctctctgaaaatga 186
Query: 217 gtggcgcgcgatcggagtgcagcagagccgcgggtgggt 255
|||||||| || ||||||||||||||||| || |||||
Sbjct: 187 atggcgcgcaattggagtgcagcagagccgtggctgggt 225
>gb|AL366930.1|AL366930 MtBA11A12F1 MtBA Medicago truncatula cDNA clone MtBA11A12 T3, mRNA
sequence
Length = 215
Score = 71.9 bits (36), Expect = 8e-011
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacaggca 153
|||||||||||||||||||| |||||||| ||||| ||||| || |||||||||||
Sbjct: 47 atgggtcagatccagtactctgagaagtatttcgatgacacttatgagtacaggca 102
>emb|CR313071.1| mte1-35P14RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 543
Score = 67.9 bits (34), Expect = 1e-009
Identities = 49/54 (90%)
Strand = Plus / Plus
Query: 98 atgggtcagatccagtactccgagaagtacttcgacgacacctacgagtacagg 151
|||||||||||||||||||| |||||||| ||||| ||||| || |||||||||
Sbjct: 409 atgggtcagatccagtactctgagaagtatttcgatgacacttatgagtacagg 462
>emb|CR323648.1| mte1-50B19FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 523
Score = 50.1 bits (25), Expect = 3e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 218 tggcgcgcgatcggagtgcagcagagccgcgggtgggtgcactacgcgatccaccgcccg 277
|||||||| || ||||||||||||||||| || ||||| || || || ||||| || ||
Sbjct: 442 tggcgcgcaattggagtgcagcagagccgtggctgggttcattatgcaatccatcgtcct 501
Query: 278 gagccgcacatcatgct 294
||||| ||||| |||||
Sbjct: 502 gagccacacattatgct 518
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140,127
Number of Sequences: 392609
Number of extensions: 140127
Number of successful extensions: 10056
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10042
Number of HSP's gapped (non-prelim): 13
length of query: 779
length of database: 441,732,993
effective HSP length: 20
effective length of query: 759
effective length of database: 433,880,813
effective search space: 329315537067
effective search space used: 329315537067
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)