BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2441599.2.1
(755 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|CR352109.1| mte1-9H22RM1 BAC end, cultivar Jemalong A17... 40 0.26
gb|AW686776.1|AW686776 NF042G06NR1F1000 Nodulated root Medi... 40 0.26
gb|AW774750.1|AW774750 EST333901 KV3 Medicago truncatula cD... 40 0.26
gb|BI264110.1|BI264110 NF093F01PL1F1014 Phosphate starved l... 40 0.26
gb|CB893324.1|CB893324 EST646116 HOGA Medicago truncatula c... 40 0.26
gb|CB893330.1|CB893330 EST646122 HOGA Medicago truncatula c... 40 0.26
gb|CB893335.1|CB893335 EST646127 HOGA Medicago truncatula c... 40 0.26
gb|CB893728.1|CB893728 EST646520 HOGA Medicago truncatula c... 40 0.26
gb|AJ846992.1|AJ846992 AJ846992 MtSTW Medicago truncatula c... 40 0.26
>emb|CR352109.1| mte1-9H22RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 520
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 142 gcagccaacaaagaagatacaaaa 165
||||||||||||||||||| ||||
Sbjct: 22 gcagccaacaaagaagatagaaaa 45
>gb|AW686776.1|AW686776 NF042G06NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF042G06NR 5', mRNA sequence
Length = 649
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 142 gcagccaacaaagaagatacaaaa 165
||||||||||||||||||| ||||
Sbjct: 307 gcagccaacaaagaagatagaaaa 330
>gb|AW774750.1|AW774750 EST333901 KV3 Medicago truncatula cDNA clone pKV3-23F18, mRNA
sequence
Length = 724
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 142 gcagccaacaaagaagatacaaaa 165
||||||||||||||||||| ||||
Sbjct: 582 gcagccaacaaagaagatagaaaa 605
>gb|BI264110.1|BI264110 NF093F01PL1F1014 Phosphate starved leaf Medicago truncatula cDNA
clone NF093F01PL 5', mRNA sequence
Length = 634
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 142 gcagccaacaaagaagatacaaaa 165
||||||||||||||||||| ||||
Sbjct: 221 gcagccaacaaagaagatagaaaa 244
>gb|CB893324.1|CB893324 EST646116 HOGA Medicago truncatula cDNA clone HOGA-27B23, mRNA
sequence
Length = 791
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 142 gcagccaacaaagaagatacaaaa 165
||||||||||||||||||| ||||
Sbjct: 536 gcagccaacaaagaagatagaaaa 559
>gb|CB893330.1|CB893330 EST646122 HOGA Medicago truncatula cDNA clone HOGA-27D13, mRNA
sequence
Length = 780
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 142 gcagccaacaaagaagatacaaaa 165
||||||||||||||||||| ||||
Sbjct: 538 gcagccaacaaagaagatagaaaa 561
>gb|CB893335.1|CB893335 EST646127 HOGA Medicago truncatula cDNA clone HOGA-27D23, mRNA
sequence
Length = 788
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 142 gcagccaacaaagaagatacaaaa 165
||||||||||||||||||| ||||
Sbjct: 536 gcagccaacaaagaagatagaaaa 559
>gb|CB893728.1|CB893728 EST646520 HOGA Medicago truncatula cDNA clone HOGA-28H4, mRNA
sequence
Length = 786
Score = 40.1 bits (20), Expect = 0.26
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 142 gcagccaacaaagaagatacaaaa 165
||||||||||||||||||| ||||
Sbjct: 96 gcagccaacaaagaagatagaaaa 119
>gb|AJ846992.1|AJ846992 AJ846992 MtSTW Medicago truncatula cDNA clone MtTW03A20N1, mRNA
sequence
Length = 439
Score = 40.1 bits (20), Expect = 0.26
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 558 cggttggtgtcgaacgttcggtagtaatgctccacgaaggcctt 601
|||||||||||||| || |||||| ||||||||||| |||||
Sbjct: 333 cggttggtgtcgaaggtggtgtagtagtgctccacgaatgcctt 376
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 142,910
Number of Sequences: 392609
Number of extensions: 142910
Number of successful extensions: 11837
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11825
Number of HSP's gapped (non-prelim): 12
length of query: 755
length of database: 441,732,993
effective HSP length: 20
effective length of query: 735
effective length of database: 433,880,813
effective search space: 318902397555
effective search space used: 318902397555
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)