BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192701.2.2
(654 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF519489.1|BF519489 EST456952 DSIL Medicago truncatula c... 52 6e-005
gb|BF519569.1|BF519569 EST457033 DSIL Medicago truncatula c... 52 6e-005
gb|AW687492.2|AW687492 NF010B10RT1F1080 Developing root Med... 52 6e-005
gb|BE249778.2|BE249778 NF022D06LF1F1057 Developing leaf Med... 52 6e-005
gb|BG448571.1|BG448571 NF037G11RT1F1085 Developing root Med... 52 6e-005
gb|BG454020.1|BG454020 NF104G01LF1F1004 Developing leaf Med... 52 6e-005
gb|BG458234.1|BG458234 NF052G10PL1F1081 Phosphate starved l... 52 6e-005
gb|BQ153045.1|BQ153045 NF027H08IR1F1076 Irradiated Medicago... 52 6e-005
gb|BQ156214.1|BQ156214 NF090E06IR1F1051 Irradiated Medicago... 52 6e-005
gb|BQ157327.1|BQ157327 NF103F11IR1F1095 Irradiated Medicago... 52 6e-005
gb|AJ499041.1|AJ499041 AJ499041 MTPOSE Medicago truncatula ... 52 6e-005
gb|CA990012.1|CA990012 EST643520 GESD Medicago truncatula c... 52 6e-005
gb|CA918853.1|CA918853 EST636571 MTUS Medicago truncatula c... 52 6e-005
gb|CF068207.1|CF068207 EST668928 MTUS Medicago truncatula c... 52 6e-005
gb|CX541901.1|CX541901 s13dNF0BC08GS066_467110 Germinating ... 52 6e-005
gb|DW018020.1|DW018020 EST1226981 MTY Medicago truncatula c... 52 6e-005
gb|AC125479.16| Medicago truncatula clone mth2-7f11, comple... 52 6e-005
gb|AC130798.15| Medicago truncatula clone mth2-27f17, compl... 46 0.004
emb|CT571260.1| Medicago truncatula chromosome 5 clone mth2... 46 0.004
gb|AC174306.3| Medicago truncatula clone mth2-116f22, WORKI... 46 0.004
emb|CR351185.1| mte1-86D21FM1 BAC end, cultivar Jemalong A1... 44 0.015
gb|BE124533.1|BE124533 EST393568 GVN Medicago truncatula cD... 42 0.058
gb|BE316896.2|BE316896 NF065A11LF1F1081 Developing leaf Med... 42 0.058
gb|BG580694.1|BG580694 EST482421 GVN Medicago truncatula cD... 42 0.058
gb|CF069359.1|CF069359 EST670080 MTUS Medicago truncatula c... 42 0.058
gb|CX516559.1|CX516559 s13dNF02E11VI083_337939 Virus-Infect... 42 0.058
gb|CX520631.1|CX520631 s13dNF61A11VI083_449048 Virus-Infect... 42 0.058
gb|CX521132.1|CX521132 s13dNF66B10VI079_450050 Virus-Infect... 42 0.058
gb|CX522448.1|CX522448 s13dNF86A05VI034_470700 Virus-Infect... 42 0.058
gb|CX539318.1|CX539318 s13dNF64F01GS011_461896 Germinating ... 42 0.058
gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone m... 42 0.058
gb|CG925677.1|CG925677 MBEDJ30TRC mth2 Medicago truncatula ... 40 0.23
emb|CR351118.1| mte1-86M20FM1 BAC end, cultivar Jemalong A1... 40 0.23
emb|CR322579.1| mte1-5C17RM1 BAC end, cultivar Jemalong A17... 40 0.23
>gb|BF519489.1|BF519489 EST456952 DSIL Medicago truncatula cDNA clone pDSIL-20H20, mRNA
sequence
Length = 486
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 335 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 384
>gb|BF519569.1|BF519569 EST457033 DSIL Medicago truncatula cDNA clone pDSIL-21I5, mRNA
sequence
Length = 582
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 297 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 346
>gb|AW687492.2|AW687492 NF010B10RT1F1080 Developing root Medicago truncatula cDNA clone
NF010B10RT 5', mRNA sequence
Length = 538
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 282 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 331
>gb|BE249778.2|BE249778 NF022D06LF1F1057 Developing leaf Medicago truncatula cDNA clone
NF022D06LF 5', mRNA sequence
Length = 380
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 259 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 308
>gb|BG448571.1|BG448571 NF037G11RT1F1085 Developing root Medicago truncatula cDNA clone
NF037G11RT 5', mRNA sequence
Length = 620
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 331 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 380
>gb|BG454020.1|BG454020 NF104G01LF1F1004 Developing leaf Medicago truncatula cDNA clone
NF104G01LF 5', mRNA sequence
Length = 623
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 334 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 383
>gb|BG458234.1|BG458234 NF052G10PL1F1081 Phosphate starved leaf Medicago truncatula cDNA
clone NF052G10PL 5', mRNA sequence
Length = 669
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 320 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 369
>gb|BQ153045.1|BQ153045 NF027H08IR1F1076 Irradiated Medicago truncatula cDNA clone
NF027H08IR 5', mRNA sequence
Length = 416
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 85 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 134
>gb|BQ156214.1|BQ156214 NF090E06IR1F1051 Irradiated Medicago truncatula cDNA clone
NF090E06IR 5', mRNA sequence
Length = 395
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 167 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 216
>gb|BQ157327.1|BQ157327 NF103F11IR1F1095 Irradiated Medicago truncatula cDNA clone
NF103F11IR 5', mRNA sequence
Length = 409
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 175 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 224
>gb|AJ499041.1|AJ499041 AJ499041 MTPOSE Medicago truncatula cDNA clone mt--acc955211e02,
mRNA sequence
Length = 584
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 365 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 414
>gb|CA990012.1|CA990012 EST643520 GESD Medicago truncatula cDNA clone GESD-27C16, mRNA
sequence
Length = 661
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 297 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 346
>gb|CA918853.1|CA918853 EST636571 MTUS Medicago truncatula cDNA clone MTUS-5B7, mRNA
sequence
Length = 618
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 310 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 261
>gb|CF068207.1|CF068207 EST668928 MTUS Medicago truncatula cDNA clone MTUS-5B7, mRNA
sequence
Length = 673
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 284 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 333
>gb|CX541901.1|CX541901 s13dNF0BC08GS066_467110 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 514
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 184 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 233
>gb|DW018020.1|DW018020 EST1226981 MTY Medicago truncatula cDNA clone MTYB123, mRNA
sequence
Length = 667
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 363 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 412
>gb|AC125479.16| Medicago truncatula clone mth2-7f11, complete sequence
Length = 114214
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaaggaaggagggcccaagtgccc 435
||||| ||||||||||||||||| ||| | ||||||| |||||||||||
Sbjct: 38261 tgcccttgctacaacaactggaagacccaacaaggaggacccaagtgccc 38310
>gb|AC130798.15| Medicago truncatula clone mth2-27f17, complete sequence
Length = 92189
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 392 tgctacaacaactggaaaaccaaggaaggagggcccaagtgccccta 438
||||| |||||||||||||| ||||||||| || |||||||||||
Sbjct: 84829 tgctataacaactggaaaactaaggaaggaaaaccgaagtgccccta 84875
>emb|CT571260.1| Medicago truncatula chromosome 5 clone mth2-35p14, COMPLETE SEQUENCE
Length = 120436
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 392 tgctacaacaactggaaaaccaaggaaggagggcccaagtgccccta 438
||||| || |||||||||| ||| ||||||| ||||||||||||||
Sbjct: 35455 tgctataataactggaaaaataagaaaggaggacccaagtgccccta 35409
>gb|AC174306.3| Medicago truncatula clone mth2-116f22, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 63355
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 392 tgctacaacaactggaaaaccaaggaaggagggcccaagtgccccta 438
||||| |||||||||||||| ||||||||| || |||||||||||
Sbjct: 55996 tgctataacaactggaaaactaaggaaggaaaaccgaagtgccccta 56042
>emb|CR351185.1| mte1-86D21FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 657
Score = 44.1 bits (22), Expect = 0.015
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 192 gcggcggcggaggcggaggcggaggc 217
|||| |||||||||||||||||||||
Sbjct: 304 gcggaggcggaggcggaggcggaggc 329
>gb|BE124533.1|BE124533 EST393568 GVN Medicago truncatula cDNA clone pGVN-59N20, mRNA
sequence
Length = 521
Score = 42.1 bits (21), Expect = 0.058
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaa 414
||||| ||||||||||||||||| |||||
Sbjct: 297 tgcccttgctacaacaactggaagaccaa 325
>gb|BE316896.2|BE316896 NF065A11LF1F1081 Developing leaf Medicago truncatula cDNA clone
NF065A11LF 5', mRNA sequence
Length = 515
Score = 42.1 bits (21), Expect = 0.058
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaa 414
||||| ||||||||||||||||| |||||
Sbjct: 274 tgcccttgctacaacaactggaagaccaa 302
>gb|BG580694.1|BG580694 EST482421 GVN Medicago truncatula cDNA clone pGVN-61E10 5' end,
mRNA sequence
Length = 542
Score = 42.1 bits (21), Expect = 0.058
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaa 414
||||| ||||||||||||||||| |||||
Sbjct: 297 tgcccttgctacaacaactggaagaccaa 325
>gb|CF069359.1|CF069359 EST670080 MTUS Medicago truncatula cDNA clone MTUS-19D9, mRNA
sequence
Length = 555
Score = 42.1 bits (21), Expect = 0.058
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaa 414
||||| ||||||||||||||||| |||||
Sbjct: 310 tgcccttgctacaacaactggaagaccaa 338
>gb|CX516559.1|CX516559 s13dNF02E11VI083_337939 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 579
Score = 42.1 bits (21), Expect = 0.058
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaa 414
||||| ||||||||||||||||| |||||
Sbjct: 354 tgcccttgctacaacaactggaagaccaa 382
>gb|CX520631.1|CX520631 s13dNF61A11VI083_449048 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 557
Score = 42.1 bits (21), Expect = 0.058
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaa 414
||||| ||||||||||||||||| |||||
Sbjct: 333 tgcccttgctacaacaactggaagaccaa 361
>gb|CX521132.1|CX521132 s13dNF66B10VI079_450050 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 585
Score = 42.1 bits (21), Expect = 0.058
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaa 414
||||| ||||||||||||||||| |||||
Sbjct: 361 tgcccttgctacaacaactggaagaccaa 389
>gb|CX522448.1|CX522448 s13dNF86A05VI034_470700 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 559
Score = 42.1 bits (21), Expect = 0.058
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaa 414
||||| ||||||||||||||||| |||||
Sbjct: 362 tgcccttgctacaacaactggaagaccaa 390
>gb|CX539318.1|CX539318 s13dNF64F01GS011_461896 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 573
Score = 42.1 bits (21), Expect = 0.058
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 386 tgcccctgctacaacaactggaaaaccaa 414
||||| ||||||||||||||||| |||||
Sbjct: 349 tgcccttgctacaacaactggaagaccaa 377
>gb|AC158502.3| Medicago truncatula chromosome 7 BAC clone mth2-73i16, complete
sequence
Length = 124955
Score = 42.1 bits (21), Expect = 0.058
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 386 tgcccctgctacaacaactggaaaaccaa 414
||||| ||||||||||||||||| |||||
Sbjct: 26407 tgcccttgctacaacaactggaagaccaa 26379
>gb|CG925677.1|CG925677 MBEDJ30TRC mth2 Medicago truncatula genomic clone 32E12, DNA
sequence
Length = 364
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 191 ggcggcggcggaggcggagg 210
||||||||||||||||||||
Sbjct: 290 ggcggcggcggaggcggagg 309
>emb|CR351118.1| mte1-86M20FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 194 ggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||||||
Sbjct: 599 ggcggaggaggcggaggcggaggc 622
>emb|CR322579.1| mte1-5C17RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.23
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 194 ggcggcggaggcggaggcggaggc 217
||||| ||||||||||||||||||
Sbjct: 582 ggcggaggaggcggaggcggaggc 605
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,675
Number of Sequences: 392609
Number of extensions: 78675
Number of successful extensions: 5177
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5123
Number of HSP's gapped (non-prelim): 52
length of query: 654
length of database: 441,732,993
effective HSP length: 19
effective length of query: 635
effective length of database: 434,273,422
effective search space: 275763622970
effective search space used: 275763622970
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)