BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161238.2.1
(1225 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI311451.1|BI311451 EST5313201 GESD Medicago truncatula ... 44 0.028
gb|CA920591.1|CA920591 EST638309 MTUS Medicago truncatula c... 44 0.028
gb|CG923758.1|CG923758 MBECD08TF mth2 Medicago truncatula g... 42 0.11
gb|CG943493.1|CG943493 MBEGC52TR mth2 Medicago truncatula g... 42 0.11
gb|CL314352.1|CL314352 mth2-132C03_OP Medicago truncatula B... 42 0.11
emb|CR313685.1| mte1-36H18FM1 BAC end, cultivar Jemalong A1... 42 0.11
emb|CR966879.1| mth4-38L15RM1 BAC end, cultivar Jemalong A1... 42 0.11
gb|BG580761.1|BG580761 EST482489 GVN Medicago truncatula cD... 42 0.11
gb|BG581103.1|BG581103 EST482833 GVN Medicago truncatula cD... 42 0.11
gb|AC122170.22| Medicago truncatula clone mth2-13k6, WORKIN... 42 0.11
gb|AC146562.17| Medicago truncatula clone mth2-14d10, compl... 42 0.11
gb|AC138464.19| Medicago truncatula clone mth2-29i23, compl... 42 0.11
gb|AC149131.3| Medicago truncatula chromosome 7 BAC clone m... 42 0.11
gb|AC154391.1| Medicago truncatula chromosome 7 BAC clone m... 42 0.11
gb|AC170582.1| Medicago truncatula chromosome 7 clone mth2-... 42 0.11
gb|AC146332.31| Medicago truncatula clone mth2-7l17, WORKIN... 42 0.11
gb|AC174343.5| Medicago truncatula clone mth2-166f7, WORKIN... 42 0.11
gb|CG956261.1|CG956261 MBEDR07TRC mth2 Medicago truncatula ... 40 0.43
emb|CR485782.1| mth2-154J16FM2 BAC end, cultivar Jemalong A... 40 0.43
emb|CR971187.1| mth4-18C14FM1 BAC end, cultivar Jemalong A1... 40 0.43
gb|AJ847718.1|AJ847718 AJ847718 MtSTA Medicago truncatula c... 40 0.43
emb|AJ131964.1|MTR131964 Medicago truncatula sucS1 gene, ex... 40 0.43
gb|AC136506.10| Medicago truncatula clone mth2-33c8, comple... 40 0.43
gb|AC145222.18| Medicago truncatula clone mth2-29a15, compl... 40 0.43
gb|AC139746.15| Medicago truncatula clone mth2-17b20, compl... 40 0.43
gb|AC122171.21| Medicago truncatula clone mth2-23b18, compl... 40 0.43
gb|AC122161.26| Medicago truncatula clone mth2-11l3, comple... 40 0.43
gb|AC148177.13| Medicago truncatula clone mth2-4c9, complet... 40 0.43
gb|AC149303.10| Medicago truncatula clone mth2-76a20, compl... 40 0.43
gb|AC140023.13| Medicago truncatula clone mth2-32h4, comple... 40 0.43
gb|AC138199.22| Medicago truncatula clone mth2-15g10, compl... 40 0.43
gb|AC146560.21| Medicago truncatula clone mth2-12g6, comple... 40 0.43
gb|AC144591.9| Medicago truncatula clone mth2-5f17, complet... 40 0.43
gb|AC124967.25| Medicago truncatula clone mth2-13h21, WORKI... 40 0.43
emb|CT485798.1| Medicago truncatula chromosome 5 clone mth2... 40 0.43
gb|AC170580.3| Medicago truncatula chromosome 7 BAC clone m... 40 0.43
gb|AC174364.2| Medicago truncatula clone mth2-43g7, WORKING... 40 0.43
emb|CT030177.4| Medicago truncatula chromosome 3 clone MTH2... 40 0.43
gb|AC174327.5| Medicago truncatula clone mth2-108e23, WORKI... 40 0.43
>gb|BI311451.1|BI311451 EST5313201 GESD Medicago truncatula cDNA clone pGESD10N2 5' end,
mRNA sequence
Length = 708
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 166 tttattattatgattattatta 187
||||||||||||||||||||||
Sbjct: 670 tttattattatgattattatta 691
>gb|CA920591.1|CA920591 EST638309 MTUS Medicago truncatula cDNA clone MTUS-30A9, mRNA
sequence
Length = 811
Score = 44.1 bits (22), Expect = 0.028
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 166 tttattattatgattattatta 187
||||||||||||||||||||||
Sbjct: 39 tttattattatgattattatta 18
>gb|CG923758.1|CG923758 MBECD08TF mth2 Medicago truncatula genomic clone 24B16, DNA
sequence
Length = 178
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattattac 188
||||||||||||| |||||||||||
Sbjct: 177 gttttattattattattattattac 153
>gb|CG943493.1|CG943493 MBEGC52TR mth2 Medicago truncatula genomic clone 48J7, DNA sequence
Length = 724
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 524 ttattattatgattattatta 544
>gb|CL314352.1|CL314352 mth2-132C03_OP Medicago truncatula BAC end sequences Medicago
truncatula genomic 5', DNA sequence
Length = 725
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 258 ttattattatgattattatta 278
>emb|CR313685.1| mte1-36H18FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 413 ttattattatgattattatta 393
>emb|CR966879.1| mth4-38L15RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 166 tttattattatgattattatt 186
|||||||||||||||||||||
Sbjct: 181 tttattattatgattattatt 201
>gb|BG580761.1|BG580761 EST482489 GVN Medicago truncatula cDNA clone pGVN-62A23 5' end,
mRNA sequence
Length = 263
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 193 ttattattatgattattatta 213
>gb|BG581103.1|BG581103 EST482833 GVN Medicago truncatula cDNA clone pGVN-63F10 5' end,
mRNA sequence
Length = 363
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 306 ttattattatgattattatta 326
>gb|AC122170.22| Medicago truncatula clone mth2-13k6, WORKING DRAFT SEQUENCE, 7
unordered pieces
Length = 100215
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 47011 ttattattatgattattatta 47031
>gb|AC146562.17| Medicago truncatula clone mth2-14d10, complete sequence
Length = 118505
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 88069 ttattattatgattattatta 88089
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 88146 gttttattattattattattatta 88169
>gb|AC138464.19| Medicago truncatula clone mth2-29i23, complete sequence
Length = 134105
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 5786 ttattattatgattattatta 5806
>gb|AC149131.3| Medicago truncatula chromosome 7 BAC clone mth2-19e15, complete
sequence
Length = 122492
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 45292 ttattattatgattattatta 45272
>gb|AC154391.1| Medicago truncatula chromosome 7 BAC clone mth2-143d17, complete
sequence
Length = 123865
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 60975 ttattattatgattattatta 60995
>gb|AC170582.1| Medicago truncatula chromosome 7 clone mth2-5f2, *** SEQUENCING IN
PROGRESS ***, 5 ordered pieces
Length = 106192
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 163 cgttttattattatgattattatta 187
|||||||||||||| ||||||||||
Sbjct: 42710 cgttttattattattattattatta 42686
>gb|AC146332.31| Medicago truncatula clone mth2-7l17, WORKING DRAFT SEQUENCE, 2 unordered
pieces
Length = 115712
Score = 42.1 bits (21), Expect = 0.11
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 167 ttattattatgattattattactgc 191
|||||||||| ||||||||||||||
Sbjct: 106404 ttattattattattattattactgc 106380
>gb|AC174343.5| Medicago truncatula clone mth2-166f7, WORKING DRAFT SEQUENCE, 20
unordered pieces
Length = 123902
Score = 42.1 bits (21), Expect = 0.11
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 167 ttattattatgattattatta 187
|||||||||||||||||||||
Sbjct: 88376 ttattattatgattattatta 88396
>gb|CG956261.1|CG956261 MBEDR07TRC mth2 Medicago truncatula genomic clone 34A14, DNA
sequence
Length = 865
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 166 tttattattatgattattattact 189
||||||||||| ||||||||||||
Sbjct: 848 tttattattattattattattact 825
>emb|CR485782.1| mth2-154J16FM2 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 626
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 304 gttttattattattattattatta 281
>emb|CR971187.1| mth4-18C14FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 166 tttattattatgattattattact 189
||||||||||| ||||||||||||
Sbjct: 418 tttattattattattattattact 395
>gb|AJ847718.1|AJ847718 AJ847718 MtSTA Medicago truncatula cDNA clone MtTA07A15S6, mRNA
sequence
Length = 317
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 tattattatgattattatta 187
||||||||||||||||||||
Sbjct: 172 tattattatgattattatta 191
>emb|AJ131964.1|MTR131964 Medicago truncatula sucS1 gene, exons 1-14
Length = 8605
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 2964 gttttattattattattattatta 2987
>gb|AC136506.10| Medicago truncatula clone mth2-33c8, complete sequence
Length = 135457
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 167 ttattattatgattattatt 186
||||||||||||||||||||
Sbjct: 32119 ttattattatgattattatt 32100
>gb|AC145222.18| Medicago truncatula clone mth2-29a15, complete sequence
Length = 134651
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 168 tattattatgattattatta 187
||||||||||||||||||||
Sbjct: 117689 tattattatgattattatta 117708
>gb|AC139746.15| Medicago truncatula clone mth2-17b20, complete sequence
Length = 118157
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 165 ttttattattatgattattattac 188
|||||||||||| |||||||||||
Sbjct: 42738 ttttattattattattattattac 42761
>gb|AC122171.21| Medicago truncatula clone mth2-23b18, complete sequence
Length = 125865
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 85192 gttttattattattattattatta 85169
>gb|AC122161.26| Medicago truncatula clone mth2-11l3, complete sequence
Length = 118625
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 32881 gttttattattattattattatta 32904
>gb|AC148177.13| Medicago truncatula clone mth2-4c9, complete sequence
Length = 117329
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 165 ttttattattatgattattattac 188
|||||||||||| |||||||||||
Sbjct: 100505 ttttattattattattattattac 100528
>gb|AC149303.10| Medicago truncatula clone mth2-76a20, complete sequence
Length = 141028
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 55387 gttttattattattattattatta 55410
>gb|AC140023.13| Medicago truncatula clone mth2-32h4, complete sequence
Length = 152468
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 112969 gttttattattattattattatta 112946
>gb|AC138199.22| Medicago truncatula clone mth2-15g10, complete sequence
Length = 109479
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 67976 gttttattattattattattatta 67953
>gb|AC146560.21| Medicago truncatula clone mth2-12g6, complete sequence
Length = 127820
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 6837 gttttattattattattattatta 6860
>gb|AC144591.9| Medicago truncatula clone mth2-5f17, complete sequence
Length = 128353
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 168 tattattatgattattatta 187
||||||||||||||||||||
Sbjct: 35721 tattattatgattattatta 35702
>gb|AC124967.25| Medicago truncatula clone mth2-13h21, WORKING DRAFT SEQUENCE, 6 ordered
pieces
Length = 134590
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 42107 gttttattattattattattatta 42084
>emb|CT485798.1| Medicago truncatula chromosome 5 clone mth2-24d7, WORKING DRAFT SEQUENCE
Length = 116322
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 167 ttattattatgattattattactg 190
|||||||||| |||||||||||||
Sbjct: 108324 ttattattattattattattactg 108347
>gb|AC170580.3| Medicago truncatula chromosome 7 BAC clone mte1-32m6, complete sequence
Length = 44332
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 168 tattattatgattattatta 187
||||||||||||||||||||
Sbjct: 33450 tattattatgattattatta 33431
>gb|AC174364.2| Medicago truncatula clone mth2-43g7, WORKING DRAFT SEQUENCE, 2
unordered pieces
Length = 85731
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 78940 gttttattattattattattatta 78917
>emb|CT030177.4| Medicago truncatula chromosome 3 clone MTH2-154J16, WORKING DRAFT
SEQUENCE, 2 unordered pieces
Length = 126992
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 381 gttttattattattattattatta 358
>gb|AC174327.5| Medicago truncatula clone mth2-108e23, WORKING DRAFT SEQUENCE, 6
unordered pieces
Length = 135539
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 164 gttttattattatgattattatta 187
||||||||||||| ||||||||||
Sbjct: 819 gttttattattattattattatta 842
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 144,545
Number of Sequences: 392609
Number of extensions: 144545
Number of successful extensions: 12141
Number of sequences better than 0.5: 39
Number of HSP's better than 0.5 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12018
Number of HSP's gapped (non-prelim): 123
length of query: 1225
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1205
effective length of database: 433,880,813
effective search space: 522826379665
effective search space used: 522826379665
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)