BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738955.2.1
(1271 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX523727.1|CX523727 s13dNF01C11AT086_336301 Aphid-Infect... 42 0.11
gb|CX532546.1|CX532546 s13dNF73D08MJ062_271379 Methyl Jasmo... 42 0.11
emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2... 42 0.11
emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2... 40 0.45
>gb|CX523727.1|CX523727 s13dNF01C11AT086_336301 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 198
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1078 gcgtcgccgccgccgtagaacgtggcgtg 1106
||||||| |||||||||||| ||||||||
Sbjct: 183 gcgtcgctgccgccgtagaaggtggcgtg 155
>gb|CX532546.1|CX532546 s13dNF73D08MJ062_271379 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 605
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1078 gcgtcgccgccgccgtagaacgtggcgtg 1106
||||||| |||||||||||| ||||||||
Sbjct: 121 gcgtcgctgccgccgtagaaggtggcgtg 93
>emb|CR962128.2| Medicago truncatula chromosome 5 clone mth2-2o11, COMPLETE SEQUENCE
Length = 136557
Score = 42.1 bits (21), Expect = 0.11
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1078 gcgtcgccgccgccgtagaacgtggcgtg 1106
||||||| |||||||||||| ||||||||
Sbjct: 94973 gcgtcgctgccgccgtagaaggtggcgtg 95001
>emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8, COMPLETE SEQUENCE
Length = 114811
Score = 40.1 bits (20), Expect = 0.45
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 574 ttgctctgccagttctggccccagttgcgggacatgggctgcca 617
|||||||||||||| |||||||| || | |||||||| |||||
Sbjct: 47890 ttgctctgccagttttggccccaatttcttgacatgggttgcca 47847
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 172,261
Number of Sequences: 392609
Number of extensions: 172261
Number of successful extensions: 13194
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13181
Number of HSP's gapped (non-prelim): 13
length of query: 1271
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1251
effective length of database: 433,880,813
effective search space: 542784897063
effective search space used: 542784897063
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)