BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH17d04.yg.2.1
(637 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY082444.1| Medicago sativa clone MS1-3FTa alpha 1,3 fuc... 80 2e-015
gb|AY082445.1| Medicago sativa clone MS1-3FTb alpha 1,3 fuc... 80 2e-015
gb|CO513144.1|CO513144 s13dSG23D0500042_129452 Glandular tr... 32 0.45
>gb|AY082444.1| Medicago sativa clone MS1-3FTa alpha 1,3 fucosyltransferase mRNA,
complete cds
Length = 2027
Score = 79.8 bits (40), Expect = 2e-015
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcaataagagctttgaaagaatcggat 380
||||| || ||||||||||| || |||||||| || | ||| |||||||||||||| |||
Sbjct: 1316 caaaggcggcaagatgaatgtacagctgccatatccacaagggctttgaaagaatcagat 1257
Query: 381 ggaccatcatacttccacctcaaagattgatt 412
|| || ||||||||||||||||| || |||||
Sbjct: 1256 ggcccttcatacttccacctcaatgaatgatt 1225
Score = 48.1 bits (24), Expect = 8e-006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 507 ggagnaaactcttgaatatttggagcaccaacaac 541
|||| ||| |||||||||||||||| |||||||||
Sbjct: 1130 ggagcaaaatcttgaatatttggaggaccaacaac 1096
Score = 32.2 bits (16), Expect = 0.45
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 89 cttccatacaggaacgtggttgagggac 116
||||||||||||||| || || ||||||
Sbjct: 1548 cttccatacaggaacatgattcagggac 1521
>gb|AY082445.1| Medicago sativa clone MS1-3FTb alpha 1,3 fucosyltransferase mRNA,
complete cds
Length = 2134
Score = 79.8 bits (40), Expect = 2e-015
Identities = 79/92 (85%)
Strand = Plus / Minus
Query: 321 caaagacgacaagatgaatgaaccgctgccatgtcaataagagctttgaaagaatcggat 380
||||| || ||||||||||| || |||||||| || | ||| |||||||||||||| |||
Sbjct: 1316 caaaggcggcaagatgaatgtacagctgccatatccacaagggctttgaaagaatcagat 1257
Query: 381 ggaccatcatacttccacctcaaagattgatt 412
|| || ||||||||||||||||| || |||||
Sbjct: 1256 ggcccttcatacttccacctcaatgaatgatt 1225
Score = 48.1 bits (24), Expect = 8e-006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 507 ggagnaaactcttgaatatttggagcaccaacaac 541
|||| ||| |||||||||||||||| |||||||||
Sbjct: 1130 ggagcaaaatcttgaatatttggaggaccaacaac 1096
Score = 32.2 bits (16), Expect = 0.45
Identities = 25/28 (89%)
Strand = Plus / Minus
Query: 89 cttccatacaggaacgtggttgagggac 116
||||||||||||||| || || ||||||
Sbjct: 1548 cttccatacaggaacatgattcagggac 1521
>gb|CO513144.1|CO513144 s13dSG23D0500042_129452 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 579
Score = 32.2 bits (16), Expect = 0.45
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 226 aaattgttcccttttt 241
||||||||||||||||
Sbjct: 39 aaattgttcccttttt 24
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1498
Number of Sequences: 7669
Number of extensions: 1498
Number of successful extensions: 419
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 410
Number of HSP's gapped (non-prelim): 9
length of query: 637
length of database: 3,745,706
effective HSP length: 16
effective length of query: 621
effective length of database: 3,623,002
effective search space: 2249884242
effective search space used: 2249884242
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)