BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712941.2.1
(1473 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|Y11348.1|MSNANN M.sativa mRNA for annexin-like protein 56 7e-008
gb|CO517275.1|CO517275 s13dSG32H1100096_486146 Glandular tr... 38 0.017
gb|CO513442.1|CO513442 s13dSG10C0200006_130048 Glandular tr... 36 0.068
>emb|Y11348.1|MSNANN M.sativa mRNA for annexin-like protein
Length = 1533
Score = 56.0 bits (28), Expect = 7e-008
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 759 ccagcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcactgatgac 818
||||||||||||||||| ||| | || ||||| |||||||||||||| ||| ||||
Sbjct: 836 ccagcaaagtattttgcaaaggtgttgtataaggcaatgaaaggtttagggactaatgat 895
Query: 819 atgacacttataagggtggtggtgacgaggaccgagattgacatgcaatatatcaa 874
| ||||| |||||||| | || || ||||| |||||||| ||||| ||||||||
Sbjct: 896 agcacactcataagggtcattgtaacaaggactgagattgatatgcagtatatcaa 951
Score = 40.1 bits (20), Expect = 0.004
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 543 gatgcaaaggatttgtacaaagctggtgagaa 574
|||||||||| | ||||||||||||| |||||
Sbjct: 620 gatgcaaaggttctgtacaaagctggggagaa 651
>gb|CO517275.1|CO517275 s13dSG32H1100096_486146 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 628
Score = 38.2 bits (19), Expect = 0.017
Identities = 61/75 (81%)
Strand = Plus / Minus
Query: 762 gcaaagtattttgctaagctcttacgaaaggccatgaaaggtttaggcactgatgacatg 821
||||||||||| || ||| || |||| | ||| ||||||||| | || || ||||||| |
Sbjct: 544 gcaaagtatttcgcaaaggtcctacgtagggcaatgaaaggtctggggaccgatgacacg 485
Query: 822 acacttataagggtg 836
| |||||| ||||||
Sbjct: 484 aaacttatgagggtg 470
>gb|CO513442.1|CO513442 s13dSG10C0200006_130048 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 545
Score = 36.2 bits (18), Expect = 0.068
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 283 ctgctggacgtgatgcaa 300
||||||||||||||||||
Sbjct: 399 ctgctggacgtgatgcaa 416
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2937
Number of Sequences: 7669
Number of extensions: 2937
Number of successful extensions: 809
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 802
Number of HSP's gapped (non-prelim): 6
length of query: 1473
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1457
effective length of database: 3,623,002
effective search space: 5278713914
effective search space used: 5278713914
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)