BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2521919.2.1
(2729 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW698670.1|AW698670 R100 non-glandular-haired subtracted... 34 0.50
gb|CO511712.1|CO511712 s13dSG01C0100006_103324 Glandular tr... 34 0.50
gb|CO515548.1|CO515548 s13dSG53D0200026_418155 Glandular tr... 34 0.50
gb|AJ888506.1|AJ888506 AJ888506 Medicago sativa subsp. x va... 34 0.50
>gb|AW698670.1|AW698670 R100 non-glandular-haired subtracted cDNA library Medicago sativa
cDNA, mRNA sequence
Length = 522
Score = 34.2 bits (17), Expect = 0.50
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 1641 gtgctcttggattgcca 1657
|||||||||||||||||
Sbjct: 105 gtgctcttggattgcca 121
>gb|CO511712.1|CO511712 s13dSG01C0100006_103324 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 532
Score = 34.2 bits (17), Expect = 0.50
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1191 caagtaaaccactgcatctac 1211
|||||| ||||||||||||||
Sbjct: 118 caagtagaccactgcatctac 98
>gb|CO515548.1|CO515548 s13dSG53D0200026_418155 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 560
Score = 34.2 bits (17), Expect = 0.50
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 2007 ccaaacaccaaactcat 2023
|||||||||||||||||
Sbjct: 515 ccaaacaccaaactcat 531
>gb|AJ888506.1|AJ888506 AJ888506 Medicago sativa subsp. x varia 4-day-old Medicago sativa
subsp. x varia cDNA, mRNA sequence
Length = 742
Score = 34.2 bits (17), Expect = 0.50
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1191 caagtaaaccactgcatctac 1211
|||||| ||||||||||||||
Sbjct: 389 caagtagaccactgcatctac 369
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5193
Number of Sequences: 7669
Number of extensions: 5193
Number of successful extensions: 1394
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1389
Number of HSP's gapped (non-prelim): 5
length of query: 2729
length of database: 3,745,706
effective HSP length: 17
effective length of query: 2712
effective length of database: 3,615,333
effective search space: 9804783096
effective search space used: 9804783096
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)