BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306445.2.1
(1074 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO511765.1|CO511765 s13dSG01G1100088_103430 Glandular tr... 38 0.013
gb|U20431.1|MSU20431 Medicago sativa polygalacturonase mRNA... 36 0.049
gb|AY219848.1| Medicago sativa polygalactorunase PG11 precu... 36 0.049
gb|AY651248.1| Medicago sativa protein phosphatase 2c (npp2... 36 0.049
>gb|CO511765.1|CO511765 s13dSG01G1100088_103430 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 545
Score = 38.2 bits (19), Expect = 0.013
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 908 accaccatgaccatcaaaaactccaaa 934
|||||||||||||||||| | ||||||
Sbjct: 213 accaccatgaccatcaaatattccaaa 187
>gb|U20431.1|MSU20431 Medicago sativa polygalacturonase mRNA, complete cds
Length = 1492
Score = 36.2 bits (18), Expect = 0.049
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 910 caccatgaccatcaaaaactcc 931
|||| |||||||||||||||||
Sbjct: 403 caccttgaccatcaaaaactcc 382
>gb|AY219848.1| Medicago sativa polygalactorunase PG11 precursor, gene, complete cds
Length = 2213
Score = 36.2 bits (18), Expect = 0.049
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 910 caccatgaccatcaaaaactcc 931
|||| |||||||||||||||||
Sbjct: 1025 caccttgaccatcaaaaactcc 1004
>gb|AY651248.1| Medicago sativa protein phosphatase 2c (npp2c1) mRNA, complete cds
Length = 2281
Score = 36.2 bits (18), Expect = 0.049
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 690 ctagagtcaccaacattt 707
||||||||||||||||||
Sbjct: 1423 ctagagtcaccaacattt 1406
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2278
Number of Sequences: 7669
Number of extensions: 2278
Number of successful extensions: 705
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 5
length of query: 1074
length of database: 3,745,706
effective HSP length: 16
effective length of query: 1058
effective length of database: 3,623,002
effective search space: 3833136116
effective search space used: 3833136116
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)