BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.15
(797 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF020271.1|AF020271 Medicago sativa mitochondrial malate... 36 0.036
gb|CO511862.1|CO511862 s13dSG02H0200028_103624 Glandular tr... 34 0.14
gb|CO512652.1|CO512652 s13dSG19A0100001_121230 Glandular tr... 34 0.14
gb|CO512901.1|CO512901 s13dSG86B0300025_121728 Glandular tr... 34 0.14
gb|CO515480.1|CO515480 s13dSG52A1000081_418019 Glandular tr... 34 0.14
gb|CO516040.1|CO516040 s13dSG64C0800066_445408 Glandular tr... 34 0.14
>gb|AF020271.1|AF020271 Medicago sativa mitochondrial malate dehydrogenase precursor (mmdh)
mRNA, nuclear gene encoding mitochondrial protein,
complete cds
Length = 1467
Score = 36.2 bits (18), Expect = 0.036
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 743 tttcatatactatgcaat 760
||||||||||||||||||
Sbjct: 1365 tttcatatactatgcaat 1382
>gb|CO511862.1|CO511862 s13dSG02H0200028_103624 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 540
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 31 gagatgcaaggaaaaac 47
|||||||||||||||||
Sbjct: 86 gagatgcaaggaaaaac 70
>gb|CO512652.1|CO512652 s13dSG19A0100001_121230 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 245
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 31 gagatgcaaggaaaaac 47
|||||||||||||||||
Sbjct: 83 gagatgcaaggaaaaac 67
>gb|CO512901.1|CO512901 s13dSG86B0300025_121728 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 533
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 31 gagatgcaaggaaaaac 47
|||||||||||||||||
Sbjct: 84 gagatgcaaggaaaaac 68
>gb|CO515480.1|CO515480 s13dSG52A1000081_418019 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 523
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 31 gagatgcaaggaaaaac 47
|||||||||||||||||
Sbjct: 84 gagatgcaaggaaaaac 68
>gb|CO516040.1|CO516040 s13dSG64C0800066_445408 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 104
Score = 34.2 bits (17), Expect = 0.14
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 31 gagatgcaaggaaaaac 47
|||||||||||||||||
Sbjct: 88 gagatgcaaggaaaaac 72
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1089
Number of Sequences: 7669
Number of extensions: 1089
Number of successful extensions: 285
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 6
length of query: 797
length of database: 3,745,706
effective HSP length: 16
effective length of query: 781
effective length of database: 3,623,002
effective search space: 2829564562
effective search space used: 2829564562
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)