BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.458
(708 letters)
Database: MedicagoSativa_nucl_with_EST.fasta
7669 sequences; 3,745,706 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO513887.1|CO513887 s13dSG73G0300020_156436 Glandular tr... 50 2e-006
gb|CO514638.1|CO514638 s13dSG46C0400034_327936 Glandular tr... 40 0.002
>gb|CO513887.1|CO513887 s13dSG73G0300020_156436 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 551
Score = 50.1 bits (25), Expect = 2e-006
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 202 cagatcgagggggtgaacaccaaggagga 230
|||||||||||||| ||||||||||||||
Sbjct: 176 cagatcgagggggtaaacaccaaggagga 204
Score = 42.1 bits (21), Expect = 5e-004
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 127 aggctctacgtccggggcaccgtccttggatacaagcggtccaag 171
||||| |||||| |||| || || |||||||||||| ||||||||
Sbjct: 101 aggctttacgtcaggggtacagttcttggatacaagaggtccaag 145
>gb|CO514638.1|CO514638 s13dSG46C0400034_327936 Glandular trichomes Medicago sativa cDNA,
mRNA sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.002
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 256 atggcctacatctacaaggccaagaccaagagcagcggcacccactaccgctgcatctgg 315
||||| || ||||||||||||||| |||| | ||| ||||| ||||| ||||| |||
Sbjct: 185 atggcatatatctacaaggccaaggtgaagaagaacggaacccattaccgttgcatatgg 244
Query: 316 ggcaaggt 323
||||||||
Sbjct: 245 ggcaaggt 252
Database: MedicagoSativa_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:23 PM
Number of letters in database: 3,745,706
Number of sequences in database: 7669
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1119
Number of Sequences: 7669
Number of extensions: 1119
Number of successful extensions: 303
Number of sequences better than 0.5: 2
Number of HSP's better than 0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 7
length of query: 708
length of database: 3,745,706
effective HSP length: 16
effective length of query: 692
effective length of database: 3,623,002
effective search space: 2507117384
effective search space used: 2507117384
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)