BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.006B01F020311.3.1
(609 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV932103.1|AV932103 AV932103 K. Sato unpublished cDNA li... 258 2e-067
gb|BF264487.2|BF264487 HV_CEa0009I22f Hordeum vulgare seedl... 254 3e-066
gb|CA024621.1|CA024621 HZ49N06r HZ Hordeum vulgare subsp. v... 254 3e-066
gb|CA029603.1|CA029603 HZ65L02r HZ Hordeum vulgare subsp. v... 254 3e-066
gb|CA009590.1|CA009590 HU14I23r HU Hordeum vulgare subsp. v... 250 5e-065
gb|AW982740.2|AW982740 HVSMEg0004B07f Hordeum vulgare pre-a... 168 1e-040
gb|CA028957.1|CA028957 HZ63L22r HZ Hordeum vulgare subsp. v... 92 3e-017
gb|BM100077.2|BM100077 EBma01_SQ001_B24_R maternal, 4 DPA, ... 90 1e-016
gb|BU979580.1|BU979580 HA16J20r HA Hordeum vulgare subsp. v... 90 1e-016
gb|CA029014.1|CA029014 HZ63P04r HZ Hordeum vulgare subsp. v... 90 1e-016
gb|CA029433.1|CA029433 HZ65D06r HZ Hordeum vulgare subsp. v... 90 1e-016
gb|BM374077.2|BM374077 EBma03_SQ003_J08_R maternal, 8 DPA, ... 84 6e-015
gb|BF627539.2|BF627539 HVSMEb0005C01f Hordeum vulgare seedl... 66 1e-009
gb|CA024152.1|CA024152 HZ48I02r HZ Hordeum vulgare subsp. v... 60 9e-008
gb|CB883684.1|CB883684 HQ02P16w HQ Hordeum vulgare subsp. v... 60 9e-008
gb|AV923522.1|AV923522 AV923522 K. Sato unpublished cDNA li... 58 4e-007
gb|BI949335.1|BI949335 HVSMEl0013G12f Hordeum vulgare spike... 54 5e-006
gb|BI952689.1|BI952689 HVSMEm0007G12f Hordeum vulgare green... 44 0.005
gb|CA020538.1|CA020538 HZ36J20r HZ Hordeum vulgare subsp. v... 44 0.005
gb|CA024147.1|CA024147 HZ48H21r HZ Hordeum vulgare subsp. v... 44 0.005
gb|CA024885.1|CA024885 HZ50J14r HZ Hordeum vulgare subsp. v... 44 0.005
gb|CA026435.1|CA026435 HZ55O15r HZ Hordeum vulgare subsp. v... 44 0.005
>gb|AV932103.1|AV932103 AV932103 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal2e14 5', mRNA sequence
Length = 644
Score = 258 bits (130), Expect = 2e-067
Identities = 358/434 (82%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
|||||||||||||||||||| || ||||||| |||||||| || || ||| | |||||
Sbjct: 211 accctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggg 270
Query: 202 gtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagc 261
|||| ||||||||||| ||| | |||||| ||||| |||||||||||||| || ||
Sbjct: 271 atgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaacttgttagt 330
Query: 262 aacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatc 321
|| |||||||| ||||| ||||| | | |||| ||||| || |||||||| ||| ||
Sbjct: 331 aatagaggttttgaagctggaggactccatacgccatcaaatattgacccatggtctata 390
Query: 322 gttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaac 381
|||| |||||||| ||| | | ||||| |||||||||| | ||||||||||||||||||
Sbjct: 391 attggcgacgactcttccatatttgtggcgactgatcgtacatcatgtttcagtcgaaac 450
Query: 382 atcgttgctctaaggatggaggtcctctgcaatgactgcccggctggcggtgttggcatt 441
|| | ||||| ||||||||||| ||||| |||||||||| || | ||||||||||||
Sbjct: 451 attatcgctcttaggatggaggttctctgtgatgactgcccagccagtggtgttggcatt 510
Query: 442 tacaaccctggattctggggcatgaacatagaagatggaaagacatatcatctagttatg 501
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 511 tacaaccctgggttctggggcatgaacatagaagatggaaagacctacaatctagttatg 570
Query: 502 tatgttaagtcgccaaaaaccacatgcttgacagtttcgctgacaagctctgatgggttg 561
|||||||| || || || | || ||||||||||| | ||||||| |||||||||
Sbjct: 571 tatgttaaatcagcagaagctgcagaattgacagtttcattagcaagctccgatgggttg 630
Query: 562 cagaatctggcttc 575
|||||||| |||||
Sbjct: 631 cagaatcttgcttc 644
>gb|BF264487.2|BF264487 HV_CEa0009I22f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0009I22f, mRNA sequence
Length = 865
Score = 254 bits (128), Expect = 3e-066
Identities = 308/368 (83%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
|||||||||||||||||||| || ||||||| |||||||| || || ||| | |||||
Sbjct: 196 accctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggg 255
Query: 202 gtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagc 261
|||| ||||||||||| ||| | |||||| ||||| |||||||||||||| || ||
Sbjct: 256 atgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaacttgttagt 315
Query: 262 aacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatc 321
|| |||||||| ||||| ||||| | | |||| ||||| || |||||||| ||| ||
Sbjct: 316 aatagaggttttgaagctggaggactccatacgccatcaaatattgacccatggtctata 375
Query: 322 gttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaac 381
|||| |||||||| ||| | | ||||| |||||||||| | ||||||||||||||||||
Sbjct: 376 attggcgacgactcttccatatttgtggcgactgatcgtacatcatgtttcagtcgaaac 435
Query: 382 atcgttgctctaaggatggaggtcctctgcaatgactgcccggctggcggtgttggcatt 441
|| | ||||| ||||||||||| ||||| |||||||||| || | ||||||||||||
Sbjct: 436 attatcgctcttaggatggaggttctctgtgatgactgcccagccagtggtgttggcatt 495
Query: 442 tacaaccctggattctggggcatgaacatagaagatggaaagacatatcatctagttatg 501
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 496 tacaaccctgggttctggggcatgaacatagaagatggaaagacctacaatctagttatg 555
Query: 502 tatgttaa 509
||||||||
Sbjct: 556 tatgttaa 563
>gb|CA024621.1|CA024621 HZ49N06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ49N06
5-PRIME, mRNA sequence
Length = 598
Score = 254 bits (128), Expect = 3e-066
Identities = 308/368 (83%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
|||||||||||||||||||| || ||||||| |||||||| || || ||| | |||||
Sbjct: 201 accctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggg 260
Query: 202 gtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagc 261
|||| ||||||||||| ||| | |||||| ||||| |||||||||||||| || ||
Sbjct: 261 atgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaacttgttagt 320
Query: 262 aacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatc 321
|| |||||||| ||||| ||||| | | |||| ||||| || |||||||| ||| ||
Sbjct: 321 aatagaggttttgaagctggaggactccatacgccatcaaatattgacccatggtctata 380
Query: 322 gttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaac 381
|||| |||||||| ||| | | ||||| |||||||||| | ||||||||||||||||||
Sbjct: 381 attggcgacgactcttccatatttgtggcgactgatcgtacatcatgtttcagtcgaaac 440
Query: 382 atcgttgctctaaggatggaggtcctctgcaatgactgcccggctggcggtgttggcatt 441
|| | ||||| ||||||||||| ||||| |||||||||| || | ||||||||||||
Sbjct: 441 attatcgctcttaggatggaggttctctgtgatgactgcccagccagtggtgttggcatt 500
Query: 442 tacaaccctggattctggggcatgaacatagaagatggaaagacatatcatctagttatg 501
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 501 tacaaccctgggttctggggcatgaacatagaagatggaaagacctacaatctagttatg 560
Query: 502 tatgttaa 509
||||||||
Sbjct: 561 tatgttaa 568
>gb|CA029603.1|CA029603 HZ65L02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65L02
5-PRIME, mRNA sequence
Length = 598
Score = 254 bits (128), Expect = 3e-066
Identities = 308/368 (83%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
|||||||||||||||||||| || ||||||| |||||||| || || ||| | |||||
Sbjct: 201 accctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggg 260
Query: 202 gtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagc 261
|||| ||||||||||| ||| | |||||| ||||| |||||||||||||| || ||
Sbjct: 261 atgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaacttgttagt 320
Query: 262 aacagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatc 321
|| |||||||| ||||| ||||| | | |||| ||||| || |||||||| ||| ||
Sbjct: 321 aatagaggttttgaagctggaggactccatacgccatcaaatattgacccatggtctata 380
Query: 322 gttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaac 381
|||| |||||||| ||| | | ||||| |||||||||| | ||||||||||||||||||
Sbjct: 381 attggcgacgactcttccatatttgtggcgactgatcgtacatcatgtttcagtcgaaac 440
Query: 382 atcgttgctctaaggatggaggtcctctgcaatgactgcccggctggcggtgttggcatt 441
|| | ||||| ||||||||||| ||||| |||||||||| || | ||||||||||||
Sbjct: 441 attatcgctcttaggatggaggttctctgtgatgactgcccagccagtggtgttggcatt 500
Query: 442 tacaaccctggattctggggcatgaacatagaagatggaaagacatatcatctagttatg 501
||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 501 tacaaccctgggttctggggcatgaacatagaagatggaaagacctacaatctagttatg 560
Query: 502 tatgttaa 509
||||||||
Sbjct: 561 tatgttaa 568
>gb|CA009590.1|CA009590 HU14I23r HU Hordeum vulgare subsp. vulgare cDNA clone HU14I23
5-PRIME, mRNA sequence
Length = 598
Score = 250 bits (126), Expect = 5e-065
Identities = 321/386 (83%)
Strand = Plus / Plus
Query: 169 cttgctcgaaagatccccgatacattccttggggtgttctttgaggagatgggccacgga 228
||||||||||||||||| ||||| | |||| | |||||||||||||| ||| | |
Sbjct: 180 cttgctcgaaagatccctgatacgctgtttggaatattctttgaggagatcaaccatgca 239
Query: 229 ggagctggtgggatatgggcagaactggtcagcaacagaggtttcgaagcaggaggcccc 288
||||||||||| |||||||||||||| || || || |||||||| |||||||||||||||
Sbjct: 240 ggagctggtggaatatgggcagaacttgttagtaatagaggttttgaagcaggaggcccc 299
Query: 289 aatactccatcgaacattgacccctggctcatcgttggggacgactcctccgtctatgtg 348
|||||||||| || ||| | || ||| |||| |||| || ||||| ||| | | ||||
Sbjct: 300 catactccatcaaatattaatccatggtccatcattggagatgactcttccatatttgtg 359
Query: 349 gagactgatcgttcgtcatgtttcagtcgaaacatcgttgctctaaggatggaggtcctc 408
| || || ||| ||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct: 360 ggaacagaccgtacgtcatgtttcagtcgaaacaaggttgctctaagaatggaggttctc 419
Query: 409 tgcaatgactgcccggctggcggtgttggcatttacaaccctggattctggggcatgaac 468
|| || ||||||| | ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 420 tgtgataactgcccagttggcggtgttggcatttacaaccctgggttctggggcatgaac 479
Query: 469 atagaagatggaaagacatatcatctagttatgtatgttaagtcgccaaaaaccacatgc 528
||||||||||| ||||| || ||||||||||| |||| ||||| ||| |||| | |
Sbjct: 480 atagaagatgggaagacctacaatctagttatgcatgtcaagtcaccagaaacgatagaa 539
Query: 529 ttgacagtttcgctgacaagctctga 554
|||||||||| || |||||||||||
Sbjct: 540 atgacagtttcactaacaagctctga 565
>gb|AW982740.2|AW982740 HVSMEg0004B07f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0004B07f, mRNA sequence
Length = 605
Score = 168 bits (85), Expect = 1e-040
Identities = 209/249 (83%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 328 gacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaa-acatcgt 386
|||||||| ||| | | ||||| |||||||||| | |||||||||||||||| |||| |
Sbjct: 1 gacgactcttccatatttgtggcgactgatcgtacatcatgtttcagtcgaagacattat 60
Query: 387 tgctctaaggatggaggtcctctgcaatgactgcccggctggcggtgttggcatttacaa 446
||||| | ||||||||| ||||| |||||||||| || | |||||||||||||||||
Sbjct: 61 cgctcttaagatggaggttctctgtgatgactgcccagccagtggtgttggcatttacaa 120
Query: 447 ccctggattctggggcatgaacatagaagatggaaagacatatcatctagttatgtatgt 506
|||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 121 ccctgggttctggggcatgaacatagaagatggaaagacctacaatctagttatgtatgt 180
Query: 507 taagtcgccaaaaaccacatgcttgacagtttcgctgacaagctctgatgggttgcagaa 566
||| || || || | || ||||||||||| | ||||||| ||||||||||||||
Sbjct: 181 taaatcagcagaagctgcagaattgacagtttcattagcaagctccgatgggttgcagaa 240
Query: 567 tctggcttc 575
||| |||||
Sbjct: 241 tcttgcttc 249
>gb|CA028957.1|CA028957 HZ63L22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63L22
5-PRIME, mRNA sequence
Length = 390
Score = 91.7 bits (46), Expect = 3e-017
Identities = 139/170 (81%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
|||||||||||||||||||| || ||||||| |||||||| || || ||| | |||||
Sbjct: 201 accctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggg 260
Query: 202 gtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagc 261
|||| ||||||||||| ||| | |||||| ||||| |||||||||||||| || ||
Sbjct: 261 atgttttttgaggagatcaaccatgcaggagccggtggcatatgggcagaacttgttagt 320
Query: 262 aacagaggtttcgaagcaggaggccccaatactccatcgaacattgaccc 311
|| |||||||| ||||| ||||| | | |||| ||||| || ||||||||
Sbjct: 321 aatagaggttttgaagctggaggactccatacgccatcaaatattgaccc 370
>gb|BM100077.2|BM100077 EBma01_SQ001_B24_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ001_B24 5', mRNA sequence
Length = 223
Score = 89.7 bits (45), Expect = 1e-016
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 424 gctggcggtgttggcatttacaaccctggattctggggcatgaacatagaaga 476
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 132 gctggcggtgttggtatttacaacccaggattctggggcatgaacatagaaga 184
Score = 54.0 bits (27), Expect = 5e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 367 tgtttcagtcgaaacatcgttgctctaaggatgga 401
||||||||| |||| ||||||||||||||||||||
Sbjct: 75 tgtttcagtagaaatatcgttgctctaaggatgga 109
>gb|BU979580.1|BU979580 HA16J20r HA Hordeum vulgare subsp. vulgare cDNA clone HA16J20
5-PRIME, mRNA sequence
Length = 372
Score = 89.7 bits (45), Expect = 1e-016
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 424 gctggcggtgttggcatttacaaccctggattctggggcatgaacatagaaga 476
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 311 gctggcggtgttggtatttacaacccaggattctggggcatgaacatagaaga 363
Score = 44.1 bits (22), Expect = 0.005
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 372 cagtcgaaacatcgttgctctaaggatgga 401
|||| |||| ||||||||||||||||||||
Sbjct: 259 cagtagaaatatcgttgctctaaggatgga 288
Score = 40.1 bits (20), Expect = 0.082
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 229 ggagctggtgggatatgggcagaactggtcagcaacagaggtttcgaagcaggagg 284
||||||||||| ||||||| || || ||||| |||| |||||| ||||| |||||
Sbjct: 116 ggagctggtggattatgggcggagcttgtcagtaacaaaggttttgaagccggagg 171
>gb|CA029014.1|CA029014 HZ63P04r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63P04
5-PRIME, mRNA sequence
Length = 379
Score = 89.7 bits (45), Expect = 1e-016
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 424 gctggcggtgttggcatttacaaccctggattctggggcatgaacatagaaga 476
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 178 gctggcggtgttggtatttacaacccaggattctggggcatgaacatagaaga 230
Score = 54.0 bits (27), Expect = 5e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 367 tgtttcagtcgaaacatcgttgctctaaggatgga 401
||||||||| |||| ||||||||||||||||||||
Sbjct: 121 tgtttcagtagaaatatcgttgctctaaggatgga 155
>gb|CA029433.1|CA029433 HZ65D06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ65D06
5-PRIME, mRNA sequence
Length = 642
Score = 89.7 bits (45), Expect = 1e-016
Identities = 51/53 (96%)
Strand = Plus / Plus
Query: 424 gctggcggtgttggcatttacaaccctggattctggggcatgaacatagaaga 476
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 177 gctggcggtgttggtatttacaacccaggattctggggcatgaacatagaaga 229
Score = 54.0 bits (27), Expect = 5e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 367 tgtttcagtcgaaacatcgttgctctaaggatgga 401
||||||||| |||| ||||||||||||||||||||
Sbjct: 120 tgtttcagtagaaatatcgttgctctaaggatgga 154
>gb|BM374077.2|BM374077 EBma03_SQ003_J08_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_J08 5', mRNA sequence
Length = 659
Score = 83.8 bits (42), Expect = 6e-015
Identities = 48/50 (96%)
Strand = Plus / Plus
Query: 427 ggcggtgttggcatttacaaccctggattctggggcatgaacatagaaga 476
||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 475 ggcggtgttggtatttacaacccaggattctggggcatgaacatagaaga 524
Score = 54.0 bits (27), Expect = 5e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 367 tgtttcagtcgaaacatcgttgctctaaggatgga 401
||||||||| |||| ||||||||||||||||||||
Sbjct: 414 tgtttcagtagaaatatcgttgctctaaggatgga 448
>gb|BF627539.2|BF627539 HVSMEb0005C01f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0005C01f, mRNA sequence
Length = 789
Score = 65.9 bits (33), Expect = 1e-009
Identities = 93/113 (82%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
|||||||||||||||||||| || ||||||| |||||||| || || ||| | |||||
Sbjct: 210 accctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggg 269
Query: 202 gtgttctttgaggagatgggccacggaggagctggtgggatatgggcagaact 254
|||| ||||||||||| ||| | | |||| ||||| ||||||||||||||
Sbjct: 270 atgttttttgaggagatcaaccatgcatgagccggtggcatatgggcagaact 322
>gb|CA024152.1|CA024152 HZ48I02r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48I02
5-PRIME, mRNA sequence
Length = 463
Score = 60.0 bits (30), Expect = 9e-008
Identities = 156/198 (78%)
Strand = Plus / Plus
Query: 203 tgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagca 262
||||||||||||| || ||||| ||||||||||| ||||||| || || ||||| |
Sbjct: 266 tgttctttgaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagta 325
Query: 263 acagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatcg 322
||| |||||| ||||| ||||| || | ||||| || ||||| || || ||| |||
Sbjct: 326 acaaaggttttgaagccggagggcctcacactccttcaaacatagatccatggtctatca 385
Query: 323 ttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaaca 382
|||| ||||| |||||| | || ||| ||||||| | | || ||||||||| |||| |
Sbjct: 386 ttggtgacgaatcctccatatacgtgaagactgaaagaacatcttgtttcagtagaaata 445
Query: 383 tcgttgctctaaggatgg 400
||||||||||||||||||
Sbjct: 446 tcgttgctctaaggatgg 463
>gb|CB883684.1|CB883684 HQ02P16w HQ Hordeum vulgare subsp. vulgare cDNA clone HQ02P16
3-PRIME, mRNA sequence
Length = 601
Score = 60.0 bits (30), Expect = 9e-008
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 169 cttgctcgaaagatccccgatacattccttggggtgttctttgaggagatgggccacgga 228
||||||||||||||||| ||||| | |||| | |||||||||||||| ||| | |
Sbjct: 504 cttgctcgaaagatccctgatacgctgtttggaatattctttgaggagatcaaccatgca 563
Query: 229 ggagctggtgggatatgggcagaact 254
||||||||||| ||||||||||||||
Sbjct: 564 ggagctggtggaatatgggcagaact 589
>gb|AV923522.1|AV923522 AV923522 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd13h16 5', mRNA sequence
Length = 270
Score = 58.0 bits (29), Expect = 4e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 142 accctcaaggttgatgcctcgccaaagcttgctcgaaagatccccgatacattccttggg 201
|||||||||||||||||||| || ||||||| |||||||| || || ||| | |||||
Sbjct: 177 accctcaaggttgatgcctcatcacagcttgcccgaaagataccagacacactgtttggg 236
Query: 202 gtgttctttgaggagat 218
|||| |||||||||||
Sbjct: 237 atgttttttgaggagat 253
>gb|BI949335.1|BI949335 HVSMEl0013G12f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013G12f, mRNA sequence
Length = 489
Score = 54.0 bits (27), Expect = 5e-006
Identities = 156/199 (78%)
Strand = Plus / Plus
Query: 203 tgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagca 262
||||||||||||| || ||||| ||||||||||| ||||||| || || ||||| |
Sbjct: 256 tgttctttgaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagta 315
Query: 263 acagaggtttcgaagcaggaggccccaatactccatcgaacattgacccctggctcatcg 322
||| |||||| ||||| ||||| || | ||||| || ||||| || || ||| |||
Sbjct: 316 acaaaggttttgaagccggagggcctcacactccttcaaacatagatccatggtctatca 375
Query: 323 ttggggacgactcctccgtctatgtggagactgatcgttcgtcatgtttcagtcgaaaca 382
|||| ||||| |||||| | || ||| ||||||| | | || ||||||||| |||| |
Sbjct: 376 ttggtgacgaatcctccatatacgtgaagactgaaagaacatcttgtttcagtagaaata 435
Query: 383 tcgttgctctaaggatgga 401
|||||||||||| ||||||
Sbjct: 436 tcgttgctctaacgatgga 454
>gb|BI952689.1|BI952689 HVSMEm0007G12f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0007G12f, mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.005
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 203 tgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagca 262
||||||||||||| || ||||| ||||||||||| ||||||| || || ||||| |
Sbjct: 256 tgttctttgaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagta 315
Query: 263 acagaggtttcgaagcaggagg 284
||| |||||| ||||| |||||
Sbjct: 316 acaaaggttttgaagccggagg 337
>gb|CA020538.1|CA020538 HZ36J20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ36J20
5-PRIME, mRNA sequence
Length = 416
Score = 44.1 bits (22), Expect = 0.005
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 203 tgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagca 262
||||||||||||| || ||||| ||||||||||| ||||||| || || ||||| |
Sbjct: 257 tgttctttgaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagta 316
Query: 263 acagaggtttcgaagcaggagg 284
||| |||||| ||||| |||||
Sbjct: 317 acaaaggttttgaagccggagg 338
>gb|CA024147.1|CA024147 HZ48H21r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48H21
5-PRIME, mRNA sequence
Length = 428
Score = 44.1 bits (22), Expect = 0.005
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 203 tgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagca 262
||||||||||||| || ||||| ||||||||||| ||||||| || || ||||| |
Sbjct: 276 tgttctttgaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagta 335
Query: 263 acagaggtttcgaagcaggagg 284
||| |||||| ||||| |||||
Sbjct: 336 acaaaggttttgaagccggagg 357
>gb|CA024885.1|CA024885 HZ50J14r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50J14
5-PRIME, mRNA sequence
Length = 417
Score = 44.1 bits (22), Expect = 0.005
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 203 tgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagca 262
||||||||||||| || ||||| ||||||||||| ||||||| || || ||||| |
Sbjct: 253 tgttctttgaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagta 312
Query: 263 acagaggtttcgaagcaggagg 284
||| |||||| ||||| |||||
Sbjct: 313 acaaaggttttgaagccggagg 334
>gb|CA026435.1|CA026435 HZ55O15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ55O15
5-PRIME, mRNA sequence
Length = 438
Score = 44.1 bits (22), Expect = 0.005
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 203 tgttctttgaggagatgggccacggaggagctggtgggatatgggcagaactggtcagca 262
||||||||||||| || ||||| ||||||||||| ||||||| || || ||||| |
Sbjct: 273 tgttctttgaggaaatcaaccacgctggagctggtggattatgggcggagcttgtcagta 332
Query: 263 acagaggtttcgaagcaggagg 284
||| |||||| ||||| |||||
Sbjct: 333 acaaaggttttgaagccggagg 354
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,111
Number of Sequences: 312970
Number of extensions: 51111
Number of successful extensions: 13360
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13316
Number of HSP's gapped (non-prelim): 35
length of query: 609
length of database: 175,134,539
effective HSP length: 19
effective length of query: 590
effective length of database: 169,188,109
effective search space: 99820984310
effective search space used: 99820984310
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)