BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9a01.xg.2.1
(480 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedl... 54 4e-006
gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedl... 52 2e-005
gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike... 52 2e-005
gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachi... 50 7e-005
gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, sal... 50 7e-005
gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. v... 50 7e-005
emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA 50 7e-005
gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachi... 38 0.26
emb|X70881.1|HVMYB3G H.vulgare myb3 gene 38 0.26
gb|BF618630.2|BF618630 HVSMEc0006O07f Hordeum vulgare seedl... 36 1.0
gb|BG369102.2|BG369102 HVSMEi0021L15f Hordeum vulgare 20 DA... 36 1.0
gb|BQ460434.1|BQ460434 HA09K10r HA Hordeum vulgare subsp. v... 36 1.0
gb|BM371860.2|BM371860 EBma08_SQ004_D12_R maternal, 28 DPA,... 36 1.0
gb|BU975173.1|BU975173 HB30F02r BC Hordeum vulgare subsp. v... 36 1.0
gb|BU975705.1|BU975705 HB32A20r BC Hordeum vulgare subsp. v... 36 1.0
gb|BU982347.1|BU982347 HA26E05r HA Hordeum vulgare subsp. v... 36 1.0
gb|BU996156.1|BU996156 HM12K12r HM Hordeum vulgare subsp. v... 36 1.0
gb|CB875180.1|CB875180 HX07I07w HX Hordeum vulgare subsp. v... 36 1.0
gb|CV064071.1|CV064071 BNEL97c10 Barley EST endosperm libra... 36 1.0
gb|AZ048443.1|AZ048443 PSB37 Barley PstI genomic clones Hor... 34 4.0
gb|BE422251.1|BE422251 HWM022cB.03r ITEC HWM Barley Leaf Li... 34 4.0
gb|BE422283.1|BE422283 HWM022cE.02r ITEC HWM Barley Leaf Li... 34 4.0
gb|BF630934.2|BF630934 HVSMEb0014H13f Hordeum vulgare seedl... 34 4.0
gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedl... 34 4.0
gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedl... 34 4.0
gb|BG415131.1|BG415131 HVSMEk0005E10f Hordeum vulgare testa... 34 4.0
gb|BI960298.1|BI960298 HVSMEn0024C09f Hordeum vulgare rachi... 34 4.0
gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedl... 34 4.0
gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-a... 34 4.0
gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. v... 34 4.0
gb|BM375664.2|BM375664 EBem06_SQ004_A16_R embryo, 21 DPA, n... 34 4.0
gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, sal... 34 4.0
gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, sal... 34 4.0
gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, sal... 34 4.0
gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, wat... 34 4.0
gb|BQ768047.1|BQ768047 EBro08_SQ010_E18_R root, 3 week, dro... 34 4.0
gb|CA011819.1|CA011819 HT03K05r HT Hordeum vulgare subsp. v... 34 4.0
gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. v... 34 4.0
emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcriptio... 34 4.0
>gb|BF261857.2|BF261857 HV_CEa0002G15f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0002G15f, mRNA sequence
Length = 853
Score = 54.0 bits (27), Expect = 4e-006
Identities = 98/122 (80%)
Strand = Plus / Plus
Query: 28 gacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcag 87
|||||||||||| | || ||| | ||||||| |||| ||||||||| || || ||||||
Sbjct: 419 gacctcatcatccacctncactccatcctcggcaacaagtggtctcagatcgccgcgcag 478
Query: 88 ctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaag 147
||||| || | || || || ||| ||||||| | |||||||| | |||||||||||||
Sbjct: 479 ctgcccggccgcaccgacaacgaggtcaagaacttctggaactccttcatcaagaagaag 538
Query: 148 ct 149
||
Sbjct: 539 ct 540
>gb|BF617439.1|BF617439 HVSMEc0017F20f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0017F20f, mRNA sequence
Length = 786
Score = 52.0 bits (26), Expect = 2e-005
Identities = 98/122 (80%)
Strand = Plus / Plus
Query: 28 gacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcag 87
|||||||||||| | || ||| | ||||||| |||| ||||||||| || || ||||||
Sbjct: 339 gacctcatcatccacctccactccatcctcggcaacaagtggtctcagatcgccgcgcag 398
Query: 88 ctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaag 147
||||| || | || || || ||| ||||||| | |||||||| | |||||||||||||
Sbjct: 399 ctgcccggccgcaccgacaacgaggtcaagaacttctggaactccttcatcaagaagaag 458
Query: 148 ct 149
||
Sbjct: 459 ct 460
>gb|BI946875.1|BI946875 HVSMEl0002J21f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0002J21f, mRNA sequence
Length = 845
Score = 52.0 bits (26), Expect = 2e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 124 tggaactcgtgcatcaagaagaagct 149
||||||||||||||||||||||||||
Sbjct: 366 tggaactcgtgcatcaagaagaagct 391
>gb|BI959333.1|BI959333 HVSMEn0019E14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E14f, mRNA sequence
Length = 635
Score = 50.1 bits (25), Expect = 7e-005
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| || || |||| ||||| || |||| || || ||||
Sbjct: 336 tcctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgaga 395
Query: 113 tcaagaatctatggaactcgtgcatcaagaagaagct 149
||||||| | |||||| |||||||||||||||||
Sbjct: 396 tcaagaacttctggaacagctgcatcaagaagaagct 432
>gb|BQ761004.1|BQ761004 EBro04_SQ001_O04_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_O04 5', mRNA sequence
Length = 383
Score = 50.1 bits (25), Expect = 7e-005
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| || || |||| ||||| || |||| || || ||||
Sbjct: 249 tcctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgaga 308
Query: 113 tcaagaatctatggaactcgtgcatcaagaagaagct 149
||||||| | |||||| |||||||||||||||||
Sbjct: 309 tcaagaacttctggaacagctgcatcaagaagaagct 345
>gb|BU996472.1|BU996472 HM13L14r HM Hordeum vulgare subsp. vulgare cDNA clone HM13L14
5-PRIME, mRNA sequence
Length = 648
Score = 50.1 bits (25), Expect = 7e-005
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| || || |||| ||||| || |||| || || ||||
Sbjct: 345 tcctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgaga 404
Query: 113 tcaagaatctatggaactcgtgcatcaagaagaagct 149
||||||| | |||||| |||||||||||||||||
Sbjct: 405 tcaagaacttctggaacagctgcatcaagaagaagct 441
>emb|X70878.1|HVMYB3 H.vulgare myb3 mRNA
Length = 1270
Score = 50.1 bits (25), Expect = 7e-005
Identities = 79/97 (81%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||||||||||||| || || |||| ||||| || |||| || || ||||
Sbjct: 321 tcctcggcaacaggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgaga 380
Query: 113 tcaagaatctatggaactcgtgcatcaagaagaagct 149
||||||| | |||||| |||||||||||||||||
Sbjct: 381 tcaagaacttctggaacagctgcatcaagaagaagct 417
>gb|BI959020.1|BI959020 HVSMEn0017M09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0017M09f, mRNA sequence
Length = 656
Score = 38.2 bits (19), Expect = 0.26
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 33 catcatcgagctgcacgctgtcctcgggaacaggtggtc 71
||||||| |||||||| | ||| |||| |||||||||||
Sbjct: 243 catcatcaagctgcactccgtcgtcggcaacaggtggtc 281
>emb|X70881.1|HVMYB3G H.vulgare myb3 gene
Length = 3241
Score = 38.2 bits (19), Expect = 0.26
Identities = 70/87 (80%)
Strand = Plus / Plus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
|||||||||||| || || |||| ||||| || |||| || || ||||||||||| |
Sbjct: 1485 caggtggtctcagatcgcgtcgcacctgccgggccggacggacaacgagatcaagaactt 1544
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||| |||||||||||||||||
Sbjct: 1545 ctggaacagctgcatcaagaagaagct 1571
>gb|BF618630.2|BF618630 HVSMEc0006O07f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0006O07f, mRNA sequence
Length = 556
Score = 36.2 bits (18), Expect = 1.0
Identities = 70/86 (81%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 64 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 123
||||||||||| || || ||||||||||| ||| | || || || ||| ||||||| ||
Sbjct: 379 aggtggtctcagatcgccgcgcagctgcccgggcgtaccgacaacgaggtcaagaa-ctt 437
Query: 124 tggaactcgtgcatcaagaagaagct 149
| |||||| | ||||||||||||||
Sbjct: 438 ttgaactccttaatcaagaagaagct 463
>gb|BG369102.2|BG369102 HVSMEi0021L15f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0021L15f, mRNA sequence
Length = 877
Score = 36.2 bits (18), Expect = 1.0
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 86 agctgccagggaggactgataatgagatcaagaa 119
||||||||||| | || || ||||||||||||||
Sbjct: 583 agctgccagggcgtaccgacaatgagatcaagaa 616
>gb|BQ460434.1|BQ460434 HA09K10r HA Hordeum vulgare subsp. vulgare cDNA clone HA09K10
5-PRIME, mRNA sequence
Length = 613
Score = 36.2 bits (18), Expect = 1.0
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 86 agctgccagggaggactgataatgagatcaagaa 119
||||||||||| | || || ||||||||||||||
Sbjct: 396 agctgccagggcgtaccgacaatgagatcaagaa 429
>gb|BM371860.2|BM371860 EBma08_SQ004_D12_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_D12 5', mRNA sequence
Length = 594
Score = 36.2 bits (18), Expect = 1.0
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 86 agctgccagggaggactgataatgagatcaagaa 119
||||||||||| | || || ||||||||||||||
Sbjct: 440 agctgccagggcgtaccgacaatgagatcaagaa 473
>gb|BU975173.1|BU975173 HB30F02r BC Hordeum vulgare subsp. vulgare cDNA clone HB30F02
5-PRIME, mRNA sequence
Length = 425
Score = 36.2 bits (18), Expect = 1.0
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 86 agctgccagggaggactgataatgagatcaagaa 119
||||||||||| | || || ||||||||||||||
Sbjct: 258 agctgccagggcgtaccgacaatgagatcaagaa 291
>gb|BU975705.1|BU975705 HB32A20r BC Hordeum vulgare subsp. vulgare cDNA clone HB32A20
5-PRIME, mRNA sequence
Length = 574
Score = 36.2 bits (18), Expect = 1.0
Identities = 30/34 (88%)
Strand = Plus / Plus
Query: 86 agctgccagggaggactgataatgagatcaagaa 119
||||||||||| | || || ||||||||||||||
Sbjct: 450 agctgccagggcgtaccgacaatgagatcaagaa 483
>gb|BU982347.1|BU982347 HA26E05r HA Hordeum vulgare subsp. vulgare cDNA clone HA26E05
5-PRIME, mRNA sequence
Length = 551
Score = 36.2 bits (18), Expect = 1.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 141 gaagaagctgaggcagaa 158
||||||||||||||||||
Sbjct: 343 gaagaagctgaggcagaa 360
>gb|BU996156.1|BU996156 HM12K12r HM Hordeum vulgare subsp. vulgare cDNA clone HM12K12
5-PRIME, mRNA sequence
Length = 641
Score = 36.2 bits (18), Expect = 1.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 141 gaagaagctgaggcagaa 158
||||||||||||||||||
Sbjct: 618 gaagaagctgaggcagaa 635
>gb|CB875180.1|CB875180 HX07I07w HX Hordeum vulgare subsp. vulgare cDNA clone HX07I07
3-PRIME, mRNA sequence
Length = 568
Score = 36.2 bits (18), Expect = 1.0
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 141 gaagaagctgaggcagaa 158
||||||||||||||||||
Sbjct: 267 gaagaagctgaggcagaa 250
>gb|CV064071.1|CV064071 BNEL97c10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL97c10 5' similar to expressed
protein, mRNA sequence
Length = 648
Score = 36.2 bits (18), Expect = 1.0
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 141 gaagaagctgaggcagaa 158
||||||||||||||||||
Sbjct: 616 gaagaagctgaggcagaa 633
>gb|AZ048443.1|AZ048443 PSB37 Barley PstI genomic clones Hordeum vulgare subsp. vulgare
genomic clone PSB37, DNA sequence
Length = 1687
Score = 34.2 bits (17), Expect = 4.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 100 actgataatgagatcaa 116
|||||||||||||||||
Sbjct: 867 actgataatgagatcaa 883
>gb|BE422251.1|BE422251 HWM022cB.03r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM022cB.03, mRNA sequence
Length = 1380
Score = 34.2 bits (17), Expect = 4.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 202 cacggcggtgcagctcc 218
|||||||||||||||||
Sbjct: 66 cacggcggtgcagctcc 50
>gb|BE422283.1|BE422283 HWM022cE.02r ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM022cE.02, mRNA sequence
Length = 1429
Score = 34.2 bits (17), Expect = 4.0
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 202 cacggcggtgcagctcc 218
|||||||||||||||||
Sbjct: 71 cacggcggtgcagctcc 55
>gb|BF630934.2|BF630934 HVSMEb0014H13f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0014H13f, mRNA sequence
Length = 882
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 117 gctgccggggaggacggacaacgagatcaagaa 149
>gb|BG300704.1|BG300704 HVSMEb0018B03f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018B03f, mRNA sequence
Length = 609
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 414 gctgccggggaggacggacaacgagatcaagaa 446
>gb|BE559390.2|BE559390 HV_CEb0024H06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024H06f, mRNA sequence
Length = 906
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 409 gctgccggggaggacggacaacgagatcaagaa 441
>gb|BG415131.1|BG415131 HVSMEk0005E10f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0005E10f, mRNA sequence
Length = 885
Score = 34.2 bits (17), Expect = 4.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 152 ggcagaaaggcattgat 168
|||||||||||||||||
Sbjct: 243 ggcagaaaggcattgat 259
>gb|BI960298.1|BI960298 HVSMEn0024C09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024C09f, mRNA sequence
Length = 658
Score = 34.2 bits (17), Expect = 4.0
Identities = 71/89 (79%)
Strand = Plus / Plus
Query: 61 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaat 120
|||||||||||||| | || | ||| ||||| || |||| || || |||||||||||
Sbjct: 5 aacaggtggtctcagagcgcggggcacctgccgggccggacggacaacgagatcaagaac 64
Query: 121 ctatggaactcgtgcatcaagaagaagct 149
| |||||| |||||||||||||||||
Sbjct: 65 ttctggaacagctgcatcaagaagaagct 93
>gb|BF617565.3|BF617565 HVSMEc0018A12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0018A12f, mRNA sequence
Length = 777
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 399 gctgccggggaggacggacaacgagatcaagaa 431
>gb|BG343209.2|BG343209 HVSMEg0005B14f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0005B14f, mRNA sequence
Length = 935
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 413 gctgccggggaggacggacaacgagatcaagaa 445
>gb|BQ463523.1|BQ463523 HI05J08r HI Hordeum vulgare subsp. vulgare cDNA clone HI05J08
5-PRIME, mRNA sequence
Length = 436
Score = 34.2 bits (17), Expect = 4.0
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgca 81
|||| |||||||||||||| || ||||||
Sbjct: 357 tcctggggaacaggtggtcgcagattgca 385
>gb|BM375664.2|BM375664 EBem06_SQ004_A16_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ004_A16 5', mRNA sequence
Length = 655
Score = 34.2 bits (17), Expect = 4.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 152 ggcagaaaggcattgat 168
|||||||||||||||||
Sbjct: 602 ggcagaaaggcattgat 618
>gb|BM370838.2|BM370838 EBro04_SQ002_H14_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ002_H14 5', mRNA sequence
Length = 455
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 415 gctgccggggaggacggacaacgagatcaagaa 447
>gb|BM371065.2|BM371065 EBro04_SQ003_G02_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G02 5', mRNA sequence
Length = 604
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 415 gctgccggggaggacggacaacgagatcaagaa 447
>gb|BM371066.2|BM371066 EBro04_SQ003_G03_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ003_G03 5', mRNA sequence
Length = 501
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 415 gctgccggggaggacggacaacgagatcaagaa 447
>gb|BQ763917.1|BQ763917 EBro03_SQ005_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ005_C21 5', mRNA sequence
Length = 681
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 403 gctgccggggaggacggacaacgagatcaagaa 435
>gb|BQ768047.1|BQ768047 EBro08_SQ010_E18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ010_E18 5', mRNA sequence
Length = 505
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 7 gctgccggggaggacggacaacgagatcaagaa 39
>gb|CA011819.1|CA011819 HT03K05r HT Hordeum vulgare subsp. vulgare cDNA clone HT03K05
5-PRIME, mRNA sequence
Length = 615
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 20 gctgccggggaggacggacaacgagatcaagaa 52
>gb|CA032540.1|CA032540 HX13G05r HX Hordeum vulgare subsp. vulgare cDNA clone HX13G05
5-PRIME, mRNA sequence
Length = 639
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 416 gctgccggggaggacggacaacgagatcaagaa 448
>emb|X99973.1|HVMYB4TRF H.vulgare mRNA for myb4 transcription factor
Length = 1180
Score = 34.2 bits (17), Expect = 4.0
Identities = 29/33 (87%)
Strand = Plus / Plus
Query: 87 gctgccagggaggactgataatgagatcaagaa 119
|||||| |||||||| || || |||||||||||
Sbjct: 281 gctgccggggaggacggacaacgagatcaagaa 313
Database: Hordeum_nucl_with_EST.fasta
Posted date: May 2, 2006 2:38 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 61,385
Number of Sequences: 312970
Number of extensions: 61385
Number of successful extensions: 13633
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13587
Number of HSP's gapped (non-prelim): 43
length of query: 480
length of database: 175,134,539
effective HSP length: 18
effective length of query: 462
effective length of database: 169,501,079
effective search space: 78309498498
effective search space used: 78309498498
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)