BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ1h07.yg.2.1
(357 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 76 9e-013
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 76 9e-013
gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA li... 76 9e-013
gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA li... 76 9e-013
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 76 9e-013
gb|BE421427.1|BE421427 HWM009.B12 ITEC HWM Barley Leaf Libr... 70 5e-011
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 62 1e-008
gb|CA001233.1|CA001233 HS18N14u HS Hordeum vulgare subsp. v... 52 1e-005
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 48 2e-004
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 48 2e-004
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 48 2e-004
gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedl... 48 2e-004
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 48 2e-004
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 48 2e-004
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 48 2e-004
gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, n... 48 2e-004
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 48 2e-004
gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. v... 48 2e-004
gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. v... 48 2e-004
gb|BU983094.1|BU983094 HA28I14r HA Hordeum vulgare subsp. v... 48 2e-004
gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. v... 48 2e-004
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 48 2e-004
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 48 2e-004
gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. v... 48 2e-004
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 48 2e-004
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 48 2e-004
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 48 2e-004
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 48 2e-004
gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgar... 48 2e-004
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 46 8e-004
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 46 8e-004
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 46 8e-004
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 46 8e-004
gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke devel... 44 0.003
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 44 0.003
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 44 0.003
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 44 0.003
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 44 0.003
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 44 0.003
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 44 0.003
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 44 0.003
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 44 0.003
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 44 0.003
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 44 0.003
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 44 0.003
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 44 0.003
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 44 0.003
gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. v... 44 0.003
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 44 0.003
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 44 0.003
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 42 0.012
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 40 0.047
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 40 0.047
gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA,... 40 0.047
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 40 0.047
gb|BQ765573.1|BQ765573 EBro03_SQ007_F17_R root, 3 week, wat... 40 0.047
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 40 0.047
gb|AL504600.1|AL504600 AL504600 Hordeum vulgare Barke roots... 38 0.19
gb|BF625170.3|BF625170 HVSMEa0006D08f Hordeum vulgare seedl... 38 0.19
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 38 0.19
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 38 0.19
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 38 0.19
gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 ... 38 0.19
gb|BQ469285.1|BQ469285 HM03P13r HM Hordeum vulgare subsp. v... 38 0.19
>gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020O13f, mRNA sequence
Length = 535
Score = 75.8 bits (38), Expect = 9e-013
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||||| |||||||||||| |||| ||||||| ||||||| |||||||||||
Sbjct: 196 caggtggacatgaaggaggccaactcggggtcgtggatggcgatgcgcgagtcgtgggga 255
Query: 289 tnnnnctggaggatggactccaa 311
| |||| |||||||||||||
Sbjct: 256 tccatctggcggatggactccaa 278
Score = 46.1 bits (23), Expect = 8e-004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 ggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||| ||||||
Sbjct: 58 ggcatcatcgacatccagttcaggagg 84
>gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basdg18 3', mRNA sequence
Length = 704
Score = 75.8 bits (38), Expect = 9e-013
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||||| |||||||||||| |||| ||||||| ||||||| |||||||||||
Sbjct: 550 caggtggacatgaaggaggccaactcggggtcgtggatggcgatgcgcgagtcgtgggga 491
Query: 289 tnnnnctggaggatggactccaa 311
| |||| |||||||||||||
Sbjct: 490 tccatctggcggatggactccaa 468
Score = 46.1 bits (23), Expect = 8e-004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 91 ggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||| ||||||
Sbjct: 688 ggcatcatcgacatccagttcaggagg 662
>gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41p01 5', mRNA sequence
Length = 608
Score = 75.8 bits (38), Expect = 9e-013
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||||| |||||||||||| |||| ||||||| ||||||| |||||||||||
Sbjct: 37 caggtggacatgaaggaggccaactcggggtcgtggatggcgatgcgcgagtcgtgggga 96
Query: 289 tnnnnctggaggatggactccaa 311
| |||| |||||||||||||
Sbjct: 97 tccatctggcggatggactccaa 119
>gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41p01 3', mRNA sequence
Length = 573
Score = 75.8 bits (38), Expect = 9e-013
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||||| |||||||||||| |||| ||||||| ||||||| |||||||||||
Sbjct: 556 caggtggacatgaaggaggccaactcggggtcgtggatggcgatgcgcgagtcgtgggga 497
Query: 289 tnnnnctggaggatggactccaa 311
| |||| |||||||||||||
Sbjct: 496 tccatctggcggatggactccaa 474
>gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. vulgare cDNA clone HR01E04
5-PRIME, mRNA sequence
Length = 540
Score = 75.8 bits (38), Expect = 9e-013
Identities = 70/83 (84%)
Strand = Plus / Plus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||||| |||||||||||| |||| ||||||| ||||||| |||||||||||
Sbjct: 77 caggtggacatgaaggaggccaactcggggtcgtggatggcgatgcgcgagtcgtgggga 136
Query: 289 tnnnnctggaggatggactccaa 311
| |||| |||||||||||||
Sbjct: 137 tccatctggcggatggactccaa 159
>gb|BE421427.1|BE421427 HWM009.B12 ITEC HWM Barley Leaf Library Hordeum vulgare subsp.
vulgare cDNA clone HWM009.B12, mRNA sequence
Length = 808
Score = 69.9 bits (35), Expect = 5e-011
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 243 ggaggccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggaggat 302
|||||||||||| |||| ||||||| ||||||| |||||||||||| |||| ||||
Sbjct: 133 ggaggccaactcggggtcgtggatggcgatgcgcgagtcgtggggatccatctggcggat 192
Query: 303 ggactccaa 311
|||||||||
Sbjct: 193 ggactccaa 201
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 61.9 bits (31), Expect = 1e-008
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 247 gccaactctgggtggtggatgccgatgcgnnagtcgtggggatnnnnctggaggatggac 306
|||||||| |||| ||||||| ||||||| |||||||||||| |||| ||||||||
Sbjct: 675 gccaactcggggtcgtggatggcgatgcgcgagtcgtggggatccatctggcggatggac 734
Query: 307 tccaa 311
|||||
Sbjct: 735 tccaa 739
Score = 46.1 bits (23), Expect = 8e-004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 ggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||| ||||||
Sbjct: 519 ggcatcatcgacatccagttcaggagg 545
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 7 gtcgccaagtaccactttgatctcagtggcacggc 41
|||||| ||||||||||||| || || ||||||||
Sbjct: 435 gtcgcccagtaccactttgacctgagcggcacggc 469
>gb|CA001233.1|CA001233 HS18N14u HS Hordeum vulgare subsp. vulgare cDNA clone HS18N14
3-PRIME, mRNA sequence
Length = 539
Score = 52.0 bits (26), Expect = 1e-005
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 256 gggtggtggatgccgatgcgnnagtcgtggggatnnnnctggaggatggactccaa 311
|||| ||||||| ||||||| |||||||||||| |||| |||||||||||||
Sbjct: 535 gggtcgtggatggcgatgcgcgagtcgtggggatccatctggcggatggactccaa 480
>gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002C01f, mRNA sequence
Length = 823
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 113 cgccggcatcatcgacatccagtt 136
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 289 cgccggcatcatcgacatccagtt 312
>gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J19f, mRNA sequence
Length = 841
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 610 cgccggcatcatcgacatccagtt 633
>gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019F11f, mRNA sequence
Length = 759
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 624 cgccggcatcatcgacatccagtt 647
>gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20l09 5', mRNA sequence
Length = 323
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 103 cgccggcatcatcgacatccagtt 126
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 150 cgccggcatcatcgacatccagtt 173
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 310 cgccggcatcatcgacatccagtt 333
>gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, no treatment, cv Optic, EBpi07
Hordeum vulgare subsp. vulgare cDNA clone
EBpi07_SQ002_K14 5', mRNA sequence
Length = 382
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||| | ||||||||||||| || ||||| ||||||||| |||||||||||
Sbjct: 10 caggtggacctcatggaggccaactccggtacgtggacgccgatgcgcgagtcgtgggga 69
Query: 289 t 289
|
Sbjct: 70 t 70
>gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_P16 5', mRNA sequence
Length = 500
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||| | ||||||||||||| || ||||| ||||||||| |||||||||||
Sbjct: 215 caggtggacctcatggaggccaactccggtacgtggacgccgatgcgcgagtcgtgggga 274
Query: 289 t 289
|
Sbjct: 275 t 275
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 75 ccggcatcatcgacatccagtt 96
>gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. vulgare cDNA clone HA14A06
5-PRIME, mRNA sequence
Length = 421
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 386 cgccggcatcatcgacatccagtt 409
>gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. vulgare cDNA clone HA18P06
5-PRIME, mRNA sequence
Length = 495
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 413 cgccggcatcatcgacatccagtt 436
>gb|BU983094.1|BU983094 HA28I14r HA Hordeum vulgare subsp. vulgare cDNA clone HA28I14
5-PRIME, mRNA sequence
Length = 417
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 363 cgccggcatcatcgacatccagtt 386
>gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. vulgare cDNA clone HF03D17
5-PRIME, mRNA sequence
Length = 386
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||| | ||||||||||||| || ||||| ||||||||| |||||||||||
Sbjct: 14 caggtggacctcatggaggccaactccggtacgtggacgccgatgcgcgagtcgtgggga 73
Query: 289 t 289
|
Sbjct: 74 t 74
>gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. vulgare cDNA clone HF11E17
5-PRIME, mRNA sequence
Length = 538
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||| | ||||||||||||| || ||||| ||||||||| |||||||||||
Sbjct: 53 caggtggacctcatggaggccaactccggtacgtggacgccgatgcgcgagtcgtgggga 112
Query: 289 t 289
|
Sbjct: 113 t 113
>gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
5-PRIME, mRNA sequence
Length = 616
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 393 cgccggcatcatcgacatccagtt 416
>gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. vulgare cDNA clone HX11A03
5-PRIME, mRNA sequence
Length = 648
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 564 cgccggcatcatcgacatccagtt 587
>gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. vulgare cDNA clone HM07E17
3-PRIME, mRNA sequence
Length = 562
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||| | ||||||||||||| || ||||| ||||||||| |||||||||||
Sbjct: 486 caggtggacctcatggaggccaactccggtacgtggacgccgatgcgcgagtcgtgggga 427
Query: 289 t 289
|
Sbjct: 426 t 426
>gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
3-PRIME, mRNA sequence
Length = 563
Score = 48.1 bits (24), Expect = 2e-004
Identities = 51/61 (83%)
Strand = Plus / Minus
Query: 229 caggtggacatantggaggccaactctgggtggtggatgccgatgcgnnagtcgtgggga 288
||||||||| | ||||||||||||| || ||||| ||||||||| |||||||||||
Sbjct: 487 caggtggacctcatggaggccaactccggtacgtggacgccgatgcgcgagtcgtgggga 428
Query: 289 t 289
|
Sbjct: 427 t 427
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 462 cgccggcatcatcgacatccagtt 485
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 345 cgccggcatcatcgacatccagtt 368
>gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010M109 5-PRIME, mRNA sequence
Length = 345
Score = 48.1 bits (24), Expect = 2e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 87 cgccggcatcatcgacatccagtt 110
||||||||||||||||||||||||
Sbjct: 291 cgccggcatcatcgacatccagtt 314
>gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped genomic sequences from PCR
products Hordeum vulgare subsp. vulgare genomic, DNA
sequence
Length = 499
Score = 46.1 bits (23), Expect = 8e-004
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 91 ggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||| ||||||
Sbjct: 68 ggcatcatcgacatccagttcaggagg 42
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 7 gtcgccaagtaccactttgatctcagtggcacggc 41
|||||| ||||||||||||| || || ||||||||
Sbjct: 152 gtcgcccagtaccactttgacctgagcggcacggc 118
>gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12g18 5', mRNA sequence
Length = 616
Score = 46.1 bits (23), Expect = 8e-004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 ggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||| ||||||
Sbjct: 541 ggcatcatcgacatccagttcaggagg 567
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 7 gtcgccaagtaccactttgatctcagtggcacggc 41
|||||| ||||||||||||| || || ||||||||
Sbjct: 457 gtcgcccagtaccactttgacctgagcggcacggc 491
>gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42I19
5-PRIME, mRNA sequence
Length = 539
Score = 46.1 bits (23), Expect = 8e-004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 ggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||| ||||||
Sbjct: 490 ggcatcatcgacatccagttcaggagg 516
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 7 gtcgccaagtaccactttgatctcagtggcacggc 41
|||||| ||||||||||||| || || ||||||||
Sbjct: 406 gtcgcccagtaccactttgacctgagcggcacggc 440
>gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48A15
5-PRIME, mRNA sequence
Length = 584
Score = 46.1 bits (23), Expect = 8e-004
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 91 ggcatcatcgacatccagtttaggagg 117
|||||||||||||||||||| ||||||
Sbjct: 539 ggcatcatcgacatccagttcaggagg 565
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 7 gtcgccaagtaccactttgatctcagtggcacggc 41
|||||| ||||||||||||| || || ||||||||
Sbjct: 455 gtcgcccagtaccactttgacctgagcggcacggc 489
>gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01J07V 5',
mRNA sequence
Length = 549
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 480 ccggcatcatcgacatccagtt 501
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 400 gccaagtaccacttcgacctgagtggcaccgcgtt 434
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 395 ccggcatcatcgacatccagtt 416
Score = 38.2 bits (19), Expect = 0.19
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 261 gtggatgccgatgcgnnagtcgtggggat 289
||||| ||||||||| ||||||||||||
Sbjct: 567 gtggacgccgatgcgcgagtcgtggggat 595
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 316 gccaagtaccacttcgacctgagtggcaccgcgtt 350
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F11f, mRNA sequence
Length = 630
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 470 ccggcatcatcgacatccagtt 491
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 391 gccaagtaccacttcgacctgagtggcaccgcgtt 425
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 508 ccggcatcatcgacatccagtt 529
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 429 gccaagtaccacttcgacctgagtggcaccgcgtt 463
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 412 ccggcatcatcgacatccagtt 433
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 333 gccaagtaccacttcgacctgagtggcaccgcgtt 367
>gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F12f, mRNA sequence
Length = 669
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 522 ccggcatcatcgacatccagtt 543
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 443 gccaagtaccacttcgacctgagtggcaccgcgtt 477
>gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020K03f, mRNA sequence
Length = 679
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 516 ccggcatcatcgacatccagtt 537
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 437 gccaagtaccacttcgacctgagtggcaccgcgtt 471
>gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020N13f, mRNA sequence
Length = 630
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 517 ccggcatcatcgacatccagtt 538
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 438 gccaagtaccacttcgacctgagtggcaccgcgtt 472
>gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020P05f, mRNA sequence
Length = 615
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 511 ccggcatcatcgacatccagtt 532
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 432 gccaagtaccacttcgacctgagtggcaccgcgtt 466
>gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021G03f, mRNA sequence
Length = 682
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 499 ccggcatcatcgacatccagtt 520
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 420 gccaagtaccacttcgacctgagtggcaccgcgtt 454
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024K16f, mRNA sequence
Length = 677
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 522 ccggcatcatcgacatccagtt 543
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 443 gccaagtaccacttcgacctgagtggcaccgcgtt 477
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 434 ccggcatcatcgacatccagtt 455
Score = 38.2 bits (19), Expect = 0.19
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 261 gtggatgccgatgcgnnagtcgtggggat 289
||||| ||||||||| ||||||||||||
Sbjct: 605 gtggacgccgatgcgcgagtcgtggggat 633
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 355 gccaagtaccacttcgacctgagtggcaccgcgtt 389
>gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002M09f, mRNA sequence
Length = 754
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 520 ccggcatcatcgacatccagtt 541
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 441 gccaagtaccacttcgacctgagtggcaccgcgtt 475
>gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024E17f, mRNA sequence
Length = 875
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 508 ccggcatcatcgacatccagtt 529
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 429 gccaagtaccacttcgacctgagtggcaccgcgtt 463
>gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. vulgare cDNA clone HM05E17
5-PRIME, mRNA sequence
Length = 560
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 533 ccggcatcatcgacatccagtt 554
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 454 gccaagtaccacttcgacctgagtggcaccgcgtt 488
>gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
5-PRIME, mRNA sequence
Length = 653
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 530 ccggcatcatcgacatccagtt 551
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 451 gccaagtaccacttcgacctgagtggcaccgcgtt 485
>gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42H09
5-PRIME, mRNA sequence
Length = 567
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 ccggcatcatcgacatccagtt 110
||||||||||||||||||||||
Sbjct: 517 ccggcatcatcgacatccagtt 538
Score = 38.2 bits (19), Expect = 0.19
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 10 gccaagtaccactttgatctcagtggcacggcgtt 44
|||||||||||||| || || |||||||| |||||
Sbjct: 438 gccaagtaccacttcgacctgagtggcaccgcgtt 472
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,497
Number of Sequences: 312970
Number of extensions: 17497
Number of successful extensions: 5510
Number of sequences better than 0.5: 64
Number of HSP's better than 0.5 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5398
Number of HSP's gapped (non-prelim): 112
length of query: 357
length of database: 175,134,539
effective HSP length: 18
effective length of query: 339
effective length of database: 169,501,079
effective search space: 57460865781
effective search space used: 57460865781
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)