BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE6a06.yg.3.1
(2118 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK124937.1|CK124937 BES1824111A1g09 BES1824 Hordeum vulg... 638 0.0
gb|BG369658.1|BG369658 HVSMEi0025F24f Hordeum vulgare 20 DA... 498 e-139
gb|BJ464151.1|BJ464151 BJ464151 K. Sato unpublished cDNA li... 494 e-138
gb|BU968853.1|BU968853 HB08M15r BC Hordeum vulgare subsp. v... 494 e-138
gb|BU998068.1|BU998068 HI09O10r HI Hordeum vulgare subsp. v... 492 e-137
gb|CK125214.1|CK125214 BES1824107g11 BES1824 Hordeum vulgar... 478 e-133
gb|BU986381.1|BU986381 HF11K10r HF Hordeum vulgare subsp. v... 448 e-124
gb|CA031025.1|CA031025 HX08M21r HX Hordeum vulgare subsp. v... 446 e-123
gb|CA029903.1|CA029903 HX05I14r HX Hordeum vulgare subsp. v... 440 e-122
gb|CA018116.1|CA018116 HV07I10r HV Hordeum vulgare subsp. v... 432 e-119
gb|CA023719.1|CA023719 HZ47D03r HZ Hordeum vulgare subsp. v... 406 e-111
gb|BF257207.2|BF257207 HVSMEf0012D04f Hordeum vulgare seedl... 404 e-111
gb|CA001789.1|CA001789 HS05J11r HS Hordeum vulgare subsp. v... 375 e-102
gb|CA017393.1|CA017393 HV05B06r HV Hordeum vulgare subsp. v... 341 6e-092
gb|BQ759487.1|BQ759487 EBpi01_SQ004_L17_R pistil, 1 DPA, no... 329 2e-088
gb|BU989964.1|BU989964 HF23G23r HF Hordeum vulgare subsp. v... 329 2e-088
gb|BU975874.1|BU975874 HB32J03r BC Hordeum vulgare subsp. v... 309 2e-082
gb|BU980697.1|BU980697 HA21G19r HA Hordeum vulgare subsp. v... 309 2e-082
gb|CA002499.1|CA002499 HS07L04r HS Hordeum vulgare subsp. v... 299 2e-079
gb|BQ469980.1|BQ469980 HX01G19T HX Hordeum vulgare subsp. v... 236 2e-060
gb|BE215026.1|BE215026 HV_CEb0005J06f Hordeum vulgare seedl... 228 6e-058
gb|BM372681.2|BM372681 EBpi05_SQ003_K07_R pistil, 8 DPA, no... 224 9e-057
gb|BU984696.1|BU984696 HF04L10r HF Hordeum vulgare subsp. v... 224 9e-057
gb|BU987788.1|BU987788 HF15M08r HF Hordeum vulgare subsp. v... 224 9e-057
gb|CA032817.1|CA032817 HX14E17r HX Hordeum vulgare subsp. v... 224 9e-057
gb|BI951274.1|BI951274 HVSMEl0025F02f Hordeum vulgare spike... 220 1e-055
gb|BF617448.1|BF617448 HVSMEc0017G14f Hordeum vulgare seedl... 218 6e-055
gb|BQ662895.1|BQ662895 HS04K08u HS Hordeum vulgare subsp. v... 196 2e-048
gb|CA019380.1|CA019380 HV11M20r HV Hordeum vulgare subsp. v... 190 1e-046
gb|BG309743.1|BG309743 HVSMEc0012F02f Hordeum vulgare seedl... 121 1e-025
gb|CA032119.1|CA032119 HX12B05r HX Hordeum vulgare subsp. v... 121 1e-025
gb|AV913998.1|AV913998 AV913998 K. Sato unpublished cDNA li... 119 4e-025
gb|CV059766.1|CV059766 BNEL50g10 Barley EST endosperm libra... 101 9e-020
gb|BQ756325.1|BQ756325 EBem07_SQ003_K24_R embryo, 28 DPA, n... 68 1e-009
gb|BU987870.1|BU987870 HF16A02r HF Hordeum vulgare subsp. v... 68 1e-009
gb|BM372155.1|BM372155 EBro03_SQ004_C20_R root, 3 week, wat... 50 3e-004
gb|AV919022.1|AV919022 AV919022 K. Sato unpublished cDNA li... 50 3e-004
gb|BQ757457.1|BQ757457 EBem10_SQ004_D02_R embryo, 2 Day ger... 50 3e-004
gb|BU986383.1|BU986383 HF11K12r HF Hordeum vulgare subsp. v... 50 3e-004
gb|CB874526.1|CB874526 HX05I14w HX Hordeum vulgare subsp. v... 50 3e-004
gb|CB875602.1|CB875602 HX08M21w HX Hordeum vulgare subsp. v... 50 3e-004
gb|BJ474313.1|BJ474313 BJ474313 K. Sato unpublished cDNA li... 40 0.29
gb|BU979026.1|BU979026 HA14P04r HA Hordeum vulgare subsp. v... 40 0.29
>gb|CK124937.1|CK124937 BES1824111A1g09 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G0911 5-PRIME, mRNA sequence
Length = 854
Score = 638 bits (322), Expect = 0.0
Identities = 653/764 (85%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 54 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 113
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 114 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 173
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 174 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 233
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 234 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 293
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 294 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 353
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 354 ccaccgacttacaaacttgatagacttatcnttgaaagatatccatcttttgttgatgct 413
Query: 365 cttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgtt 424
|| | ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||
Sbjct: 414 ctcagagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccatt 473
Query: 425 gacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatgg 484
|| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gagggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagccatgaatgg 533
Query: 485 caagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggcata 544
|||||||| || || ||||| |||| ||| | |||||||| || || || |||||||||
Sbjct: 534 caagcatatatttctcgaactaattccctgcgaaagacattcatatctgtcaagggcata 593
Query: 545 tattatcaggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcag 604
|| || ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| |||
Sbjct: 594 tactaccaggctgaagttcaagggcaaaagatcacttggcttactccacatgctctccag 653
Query: 605 caagtattaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgag 664
||||| ||||||||||| || || ||||||||||||||| | ||| | ||||||||||||
Sbjct: 654 caagttttaactgatgacgtcgacttcaatgtgatgcttacctttttggaattctatgag 713
Query: 665 actcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcctcct 724
|||||||||||||||||||||||||| || || |||||||||||||| || ||||| |||
Sbjct: 714 actcttctaggatttgtgaacttcaagctttaccattcaataaatgtgaactatccgcct 773
Query: 725 attctggatccacgtctggaagctttagctgctgagctctatgc 768
||||||||| | ||||| ||||||| ||||||||||||||||
Sbjct: 774 attctggattctcgtctanaagctttgtctgctgagctctatgc 817
>gb|BG369658.1|BG369658 HVSMEi0025F24f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0025F24f, mRNA sequence
Length = 696
Score = 498 bits (251), Expect = e-139
Identities = 542/639 (84%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| |||||||| || ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 46 gcgggcaagaagaaagaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 105
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| ||| |||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 106 tacctgcagattatcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 165
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 166 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 225
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 226 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 285
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 286 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 345
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 346 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 405
Query: 365 cttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgtt 424
|| | ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||
Sbjct: 406 ctcagagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccatt 465
Query: 425 gacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatgg 484
|| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 466 gagggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagccatgaatgg 525
Query: 485 caagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggcata 544
|||||||| || || ||||| |||| ||| | |||||||| || || || |||||||||
Sbjct: 526 caagcatatatttctcgaactaattccctgcgaaagacattcatatctgtcaagggcata 585
Query: 545 tattatcaggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcag 604
|| || ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| |||
Sbjct: 586 tactaccaggctgaagttcaagggcaaaagatcacttggcttactccacatgctctccag 645
Query: 605 caagtattaactgatgatgttgatttcaatgtgatgctt 643
||||| ||||||||||| || || |||||||||||||||
Sbjct: 646 caagttttaactgatgacgtcgacttcaatgtgatgctt 684
>gb|BJ464151.1|BJ464151 BJ464151 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags33b08 5', mRNA sequence
Length = 626
Score = 494 bits (249), Expect = e-138
Identities = 498/581 (85%)
Strand = Plus / Plus
Query: 188 ttcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaaggaag 247
||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |||
Sbjct: 17 ttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaagaaa 76
Query: 248 gttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcggcca 307
|||||||||||| ||| ||||||||||||||||| |||||||| |||||||||| |||
Sbjct: 77 gttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcgacca 136
Query: 308 ccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgctctt 367
|| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||||
Sbjct: 137 ccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgctctc 196
Query: 368 cgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgttgac 427
| ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||||
Sbjct: 197 agagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccattgag 256
Query: 428 ggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatggcaa 487
||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagccatgaatggcaa 316
Query: 488 gcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggcatatat 547
||||| || || ||||| |||| ||| | |||||||| || || || |||||||||||
Sbjct: 317 gcatatatttctcgaactaattccctgcgaaagacattcatatctgtcaagggcatatac 376
Query: 548 tatcaggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaa 607
|| ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 377 taccaggctgaagttcaagggcaaaagatcacttggcttactccacatgctctccagcaa 436
Query: 608 gtattaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgagact 667
|| ||||||||||| || || ||||||||||||||| | ||| | |||||||||||||||
Sbjct: 437 gttttaactgatgacgtcgacttcaatgtgatgcttacctttttggaattctatgagact 496
Query: 668 cttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcctcctatt 727
||||||||||||||||||||||| || || |||||||||||||| || ||||| ||||||
Sbjct: 497 cttctaggatttgtgaacttcaagctttaccattcaataaatgtgaactatccgcctatt 556
Query: 728 ctggatccacgtctggaagctttagctgctgagctctatgc 768
|||||| | ||||| |||||||| ||||||||||||||||
Sbjct: 557 ctggattctcgtctagaagctttgtctgctgagctctatgc 597
>gb|BU968853.1|BU968853 HB08M15r BC Hordeum vulgare subsp. vulgare cDNA clone HB08M15
5-PRIME, mRNA sequence
Length = 626
Score = 494 bits (249), Expect = e-138
Identities = 498/581 (85%)
Strand = Plus / Plus
Query: 188 ttcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaaggaag 247
||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |||
Sbjct: 24 ttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaagaaa 83
Query: 248 gttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcggcca 307
|||||||||||| ||| ||||||||||||||||| |||||||| |||||||||| |||
Sbjct: 84 gttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcgacca 143
Query: 308 ccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgctctt 367
|| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||||
Sbjct: 144 ccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgctctc 203
Query: 368 cgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgttgac 427
| ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||||
Sbjct: 204 agagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccattgag 263
Query: 428 ggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatggcaa 487
||||||||||| | || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagccatgaatggcaa 323
Query: 488 gcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggcatatat 547
||||| || || ||||| |||| ||| | |||||||| || || || |||||||||||
Sbjct: 324 gcatatatttctcgaactaattccctgcgaaagacattcatatctgtcaagggcatatac 383
Query: 548 tatcaggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaa 607
|| ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||
Sbjct: 384 taccaggctgaagttcaagggcaaaagatcacttggcttactccacatgctctccagcaa 443
Query: 608 gtattaactgatgatgttgatttcaatgtgatgctttcttttctagaattctatgagact 667
|| ||||||||||| || || ||||||||||||||| | ||| | |||||||||||||||
Sbjct: 444 gttttaactgatgacgtcgacttcaatgtgatgcttacctttttggaattctatgagact 503
Query: 668 cttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatcctcctatt 727
||||||||||||||||||||||| || || |||||||||||||| || ||||| ||||||
Sbjct: 504 cttctaggatttgtgaacttcaagctttaccattcaataaatgtgaactatccgcctatt 563
Query: 728 ctggatccacgtctggaagctttagctgctgagctctatgc 768
|||||| | ||||| |||||||| ||||||||||||||||
Sbjct: 564 ctggattctcgtctagaagctttgtctgctgagctctatgc 604
>gb|BU998068.1|BU998068 HI09O10r HI Hordeum vulgare subsp. vulgare cDNA clone HI09O10
5-PRIME, mRNA sequence
Length = 665
Score = 492 bits (248), Expect = e-137
Identities = 524/616 (85%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 50 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 109
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 110 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 169
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 170 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 229
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 230 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 289
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 290 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 349
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 350 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 409
Query: 365 cttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgtt 424
|| | ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||
Sbjct: 410 ctcagagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccatt 469
Query: 425 gacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatgg 484
|| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gagggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagccatgaatgg 529
Query: 485 caagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggcata 544
|||||||| || || ||||| |||| ||| | |||||||| || || || |||||||||
Sbjct: 530 caagcatatatttctcgaactaattccctgcgaaagacattcatatctgtcaagggcata 589
Query: 545 tattatcaggccgaagttcaaggacaaaagatcacctggctaactccgcatgctcttcag 604
|| || ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||| |||
Sbjct: 590 tactaccaggctgaagttcaagggcaaaagatcacttggcttactccacatgctctccag 649
Query: 605 caagtattaactgatg 620
||||| ||||||||||
Sbjct: 650 caagttttaactgatg 665
>gb|CK125214.1|CK125214 BES1824107g11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010G117 5-PRIME, mRNA sequence
Length = 843
Score = 478 bits (241), Expect = e-133
Identities = 484/565 (85%)
Strand = Plus / Plus
Query: 204 ctttgatcgagaagttcagggagattaaggtccatcgaaggaaggttaaaaaggctgttg 263
||||||| ||||||||||| || || ||||| || ||| ||| |||||||||||| ||
Sbjct: 17 ctttgattgagaagttcagagaaatcaaggttcacagaaagaaagttaaaaaggcttatg 76
Query: 264 ctaagaaaaacagggatcttgcagacaggctgttgaatcggccaccaacttacaagcttg 323
| ||||||||||||||||| |||||||| |||||||||| ||||| |||||||| ||||
Sbjct: 77 ccaagaaaaacagggatctggcagacagattgttgaatcgaccaccgacttacaaacttg 136
Query: 324 ataggcttgtccttgaaaggtatccaacattcgttgatgctcttcgtgacttggatgact 383
|||| ||| || ||||||| |||||| | || ||||||||||| | ||||||||||| |
Sbjct: 137 atagacttatcattgaaagatatccatcttttgttgatgctctcagagacttggatgatt 196
Query: 384 gccttacaatggtgcatctgtttgcggcattacctgctgttgacggtgaacgtgttgagg 443
|||| || ||||||||| | |||||||| |||||||| |||| ||||||||||| | |
Sbjct: 197 gcctaacgatggtgcatttatttgcggctttacctgccattgagggtgaacgtgtgcaag 256
Query: 444 tcaaacgaatccataactgccgcaggttaagccatgaatggcaagcatacatatcccgaa 503
| |||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct: 257 tacaacgaatccataactgccgcaggttaagccatgaatggcaagcatatatttctcgaa 316
Query: 504 cccattctctgaggaagacatttatttccgtgaagggcatatattatcaggccgaagttc 563
| |||| ||| | |||||||| || || || ||||||||||| || ||||| |||||||
Sbjct: 317 ctaattccctgtgaaagacattcatatctgtcaagggcatatactaccaggctgaagttc 376
Query: 564 aaggacaaaagatcacctggctaactccgcatgctcttcagcaagtattaactgatgatg 623
|||| ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| |
Sbjct: 377 aagggcaaaagatcacttggcttactccacatgctctccagcaagttttaactgatgacg 436
Query: 624 ttgatttcaatgtgatgctttcttttctagaattctatgagactcttctaggatttgtga 683
| || ||||||||||||||| | ||| | |||||||||||||||||||||||||||||||
Sbjct: 437 tcgacttcaatgtgatgcttacctttttggaattctatgagactcttctaggatttgtga 496
Query: 684 acttcaaactctatcattcaataaatgtaaattatcctcctattctggatccacgtctgg 743
||||||| || || |||||||||||||| || ||||| |||||||||||| | ||||| |
Sbjct: 497 acttcaagctttaccattcaataaatgtgaactatccgcctattctggattctcgtctag 556
Query: 744 aagctttagctgctgagctctatgc 768
||||||| ||||||||||||||||
Sbjct: 557 aagctttgtctgctgagctctatgc 581
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctggtgcactg 982
|||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
Sbjct: 691 tctgagctcagattggcacagcttcaacatcagctacctgctaatgaacctggtgcgtta 750
Query: 983 atgaatcttgtagaagaatcaactgccgatgatgcaga 1020
||| |||||||||||||||||||||| |||||| ||||
Sbjct: 751 atgcatcttgtagaagaatcaactgctgatgatacaga 788
>gb|BU986381.1|BU986381 HF11K10r HF Hordeum vulgare subsp. vulgare cDNA clone HF11K10
5-PRIME, mRNA sequence
Length = 581
Score = 448 bits (226), Expect = e-124
Identities = 484/570 (84%)
Strand = Plus / Plus
Query: 92 aggaagctatgcattctaaagggtgtctttccacgtcagccaaagaagaaggtggaaggg 151
||||| ||||||||||| ||||| || ||||| || |||| |||||||||||||| |||
Sbjct: 12 aggaaactatgcattctcaagggagtgtttccccgggagcccaagaagaaggtggagggg 71
Query: 152 aaccacaagacctactaccacacaaaggatattgcattcctcgctcatgaccctttgatc 211
|||||||||||||||||||||| ||||| || || ||||| || ||||||||||||||
Sbjct: 72 aaccacaagacctactaccacatgaaggacatcgccttccttgcgcatgaccctttgatt 131
Query: 212 gagaagttcagggagattaaggtccatcgaaggaaggttaaaaaggctgttgctaagaaa 271
||||||||||| || || ||||| || ||| ||| |||||||||||| ||| ||||||
Sbjct: 132 gagaagttcagagaaatcaaggttcacagaaagaaagttaaaaaggcttatgccaagaaa 191
Query: 272 aacagggatcttgcagacaggctgttgaatcggccaccaacttacaagcttgataggctt 331
||||||||||| |||||||| |||||||||| ||||| |||||||| |||||||| |||
Sbjct: 192 aacagggatctggcagacagattgttgaatcgaccaccgacttacaaacttgatagactt 251
Query: 332 gtccttgaaaggtatccaacattcgttgatgctcttcgtgacttggatgactgccttaca 391
|| ||||||| |||||| | || ||||||||||| | ||||||||||| ||||| ||
Sbjct: 252 atcattgaaagatatccatcttttgttgatgctctcagagacttggatgattgcctaacg 311
Query: 392 atggtgcatctgtttgcggcattacctgctgttgacggtgaacgtgttgaggtcaaacga 451
||||||||| | |||||||| |||||||| |||| ||||||||||| | || |||||
Sbjct: 312 atggtgcatttatttgcggctttacctgccattgagggtgaacgtgtgcaagtacaacga 371
Query: 452 atccataactgccgcaggttaagccatgaatggcaagcatacatatcccgaacccattct 511
||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||
Sbjct: 372 atccataactgccgcaggttaagccatgaatggcaagcatatatttctcgaactaattcc 431
Query: 512 ctgaggaagacatttatttccgtgaagggcatatattatcaggccgaagttcaaggacaa 571
||| | |||||||| || || || ||||||||||| || ||||| ||||||||||| |||
Sbjct: 432 ctgcgaaagacattcatatctgtcaagggcatatactaccaggctgaagttcaagggcaa 491
Query: 572 aagatcacctggctaactccgcatgctcttcagcaagtattaactgatgatgttgatttc 631
|||||||| ||||| ||||| |||||||| |||||||| ||||||||||| || || |||
Sbjct: 492 aagatcacttggcttactccacatgctctccagcaagttttaactgatgacgtcgacttc 551
Query: 632 aatgtgatgctttcttttctagaattctat 661
|||||||||||| | ||| | |||||||||
Sbjct: 552 aatgtgatgcttacctttttggaattctat 581
>gb|CA031025.1|CA031025 HX08M21r HX Hordeum vulgare subsp. vulgare cDNA clone HX08M21
5-PRIME, mRNA sequence
Length = 644
Score = 446 bits (225), Expect = e-123
Identities = 486/573 (84%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 72 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 131
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 132 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 191
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 192 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 251
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 252 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 311
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 312 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 371
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 372 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 431
Query: 365 cttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgtt 424
|| | ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||
Sbjct: 432 ctcagagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccatt 491
Query: 425 gacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatgg 484
|| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gagggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagccatgaatgg 551
Query: 485 caagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggcata 544
|||||||| || || ||||| |||| ||| | |||||||| || || || |||||||||
Sbjct: 552 caagcatatatttctcgaactaattccctgcgaaagacattcatatctgtcaagggcata 611
Query: 545 tattatcaggccgaagttcaaggacaaaagatc 577
|| || ||||| ||||||||||| |||||||||
Sbjct: 612 tactaccaggctgaagttcaagggcaaaagatc 644
>gb|CA029903.1|CA029903 HX05I14r HX Hordeum vulgare subsp. vulgare cDNA clone HX05I14
5-PRIME, mRNA sequence
Length = 641
Score = 440 bits (222), Expect = e-122
Identities = 483/570 (84%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 72 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 131
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 132 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 191
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 192 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 251
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 252 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 311
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 312 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 371
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 372 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 431
Query: 365 cttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgtt 424
|| | ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||
Sbjct: 432 ctcagagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccatt 491
Query: 425 gacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatgg 484
|| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gagggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagccatgaatgg 551
Query: 485 caagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggcata 544
|||||||| || || ||||| |||| ||| | |||||||| || || || |||||||||
Sbjct: 552 caagcatatatttctcgaactaattccctgcgaaagacattcatatctgtcaagggcata 611
Query: 545 tattatcaggccgaagttcaaggacaaaag 574
|| || ||||| ||||||||||| ||||||
Sbjct: 612 tactaccaggctgaagttcaagggcaaaag 641
>gb|CA018116.1|CA018116 HV07I10r HV Hordeum vulgare subsp. vulgare cDNA clone HV07I10
5-PRIME, mRNA sequence
Length = 606
Score = 432 bits (218), Expect = e-119
Identities = 476/562 (84%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 45 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 104
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 105 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 164
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 165 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 224
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 225 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 284
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 285 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 344
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 345 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 404
Query: 365 cttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgtt 424
|| | ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||
Sbjct: 405 ctcagagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccatt 464
Query: 425 gacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatgg 484
|| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 465 gagggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagccatgaatgg 524
Query: 485 caagcatacatatcccgaacccattctctgaggaagacatttatttccgtgaagggcata 544
|||||||| || || ||||| |||| ||| | |||||||| || || || |||||||||
Sbjct: 525 caagcatatatttctcgaactaattccctgcgaaagacattcatatctgtcaagggcata 584
Query: 545 tattatcaggccgaagttcaag 566
|| || ||||| ||||||||||
Sbjct: 585 tactaccaggctgaagttcaag 606
>gb|CA023719.1|CA023719 HZ47D03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47D03
5-PRIME, mRNA sequence
Length = 577
Score = 406 bits (205), Expect = e-111
Identities = 442/521 (84%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 54 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 113
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 114 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 173
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 174 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 233
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 234 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 293
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 294 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 353
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 354 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 413
Query: 365 cttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgtt 424
|| | ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||
Sbjct: 414 ctcagagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccatt 473
Query: 425 gacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatgg 484
|| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gagggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagccatgaatgg 533
Query: 485 caagcatacatatcccgaacccattctctgaggaagacatt 525
|||||||| || || ||||| |||| ||| | ||||||||
Sbjct: 534 caagcatatatttctcgaactaattccctgcgaaagacatt 574
>gb|BF257207.2|BF257207 HVSMEf0012D04f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012D04f, mRNA sequence
Length = 542
Score = 404 bits (204), Expect = e-111
Identities = 417/488 (85%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 52 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 111
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 112 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 171
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 172 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 231
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 232 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 291
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 292 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 351
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 352 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 411
Query: 365 cttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgtt 424
|| | ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||
Sbjct: 412 ctcagagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccatt 471
Query: 425 gacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagccatgaatgg 484
|| ||||||||||| | || ||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gagggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagccatgaatgg 531
Query: 485 caagcata 492
||||||||
Sbjct: 532 caagcata 539
>gb|CA001789.1|CA001789 HS05J11r HS Hordeum vulgare subsp. vulgare cDNA clone HS05J11
5-PRIME, mRNA sequence
Length = 650
Score = 375 bits (189), Expect = e-102
Identities = 357/413 (86%)
Strand = Plus / Plus
Query: 356 gttgatgctcttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcatta 415
||||||||||| | ||||||||||| ||||| || ||||||||| | |||||||| |||
Sbjct: 1 gttgatgctctcagagacttggatgattgcctaacgatggtgcatttatttgcggcttta 60
Query: 416 cctgctgttgacggtgaacgtgttgaggtcaaacgaatccataactgccgcaggttaagc 475
||||| |||| ||||||||||| | || |||||||||||||||||||||||||||||
Sbjct: 61 cctgccattgagggtgaacgtgtgcaagtacaacgaatccataactgccgcaggttaagc 120
Query: 476 catgaatggcaagcatacatatcccgaacccattctctgaggaagacatttatttccgtg 535
||||||||||||||||| || || ||||| |||| ||| | |||||||| || || ||
Sbjct: 121 catgaatggcaagcatatatttctcgaactaattccctgcgaaagacattcatatctgtc 180
Query: 536 aagggcatatattatcaggccgaagttcaaggacaaaagatcacctggctaactccgcat 595
||||||||||| || ||||| ||||||||||| ||||||||||| ||||| ||||| |||
Sbjct: 181 aagggcatatactaccaggctgaagttcaagggcaaaagatcacttggcttactccacat 240
Query: 596 gctcttcagcaagtattaactgatgatgttgatttcaatgtgatgctttcttttctagaa 655
||||| |||||||| ||||||||||| || || ||||||||||||||| | ||| | |||
Sbjct: 241 gctctccagcaagttttaactgatgacgtcgacttcaatgtgatgcttacctttttggaa 300
Query: 656 ttctatgagactcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaat 715
||||||||||||||||||||||||||||||||||| || || |||||||||||||| ||
Sbjct: 301 ttctatgagactcttctaggatttgtgaacttcaagctttaccattcaataaatgtgaac 360
Query: 716 tatcctcctattctggatccacgtctggaagctttagctgctgagctctatgc 768
||||| |||||||||||| | ||||| |||||||| ||||||||||||||||
Sbjct: 361 tatccgcctattctggattctcgtctagaagctttgtctgctgagctctatgc 413
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctggtgcactg 982
|||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
Sbjct: 523 tctgagctcagattggcacagcttcaacatcagctacctgctaatgaacctggtgcgtta 582
Query: 983 atgaatcttgtagaagaatcaactgccgatgatgcaga 1020
||| |||||||||||||||||||||| |||||| ||||
Sbjct: 583 atgcatcttgtagaagaatcaactgctgatgatacaga 620
>gb|CA017393.1|CA017393 HV05B06r HV Hordeum vulgare subsp. vulgare cDNA clone HV05B06
5-PRIME, mRNA sequence
Length = 500
Score = 341 bits (172), Expect = 6e-092
Identities = 385/456 (84%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 45 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 104
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 105 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 164
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 165 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 224
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 225 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 284
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 285 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 344
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 345 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 404
Query: 365 cttcgtgacttggatgactgccttacaatggtgcatctgtttgcggcattacctgctgtt 424
|| | ||||||||||| ||||| || ||||||||| | |||||||| |||||||| ||
Sbjct: 405 ctcagagacttggatgattgcctaacgatggtgcatttatttgcggctttacctgccatt 464
Query: 425 gacggtgaacgtgttgaggtcaaacgaatccataac 460
|| ||||||||||| | || ||||||||||||||
Sbjct: 465 gagggtgaacgtgtgcaagtacaacgaatccataac 500
>gb|BQ759487.1|BQ759487 EBpi01_SQ004_L17_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ004_L17 5', mRNA sequence
Length = 593
Score = 329 bits (166), Expect = 2e-088
Identities = 283/322 (87%)
Strand = Plus / Plus
Query: 447 aacgaatccataactgccgcaggttaagccatgaatggcaagcatacatatcccgaaccc 506
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 2 aacgaatccataactgccgcaggttaagccatgaatggcaagcatatatttctcgaacta 61
Query: 507 attctctgaggaagacatttatttccgtgaagggcatatattatcaggccgaagttcaag 566
|||| ||| | |||||||| || || || ||||||||||| || ||||| ||||||||||
Sbjct: 62 attccctgcgaaagacattcatatctgtcaagggcatatactaccaggctgaagttcaag 121
Query: 567 gacaaaagatcacctggctaactccgcatgctcttcagcaagtattaactgatgatgttg 626
| ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| || |
Sbjct: 122 ggcaaaagatcacttggcttactccacatgctctccagcaagttttaactgatgacgtcg 181
Query: 627 atttcaatgtgatgctttcttttctagaattctatgagactcttctaggatttgtgaact 686
| ||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||
Sbjct: 182 acttcaatgtgatgcttacctttttggaattctatgagactcttctaggatttgtgaact 241
Query: 687 tcaaactctatcattcaataaatgtaaattatcctcctattctggatccacgtctggaag 746
|||| || || |||||||||||||| || ||||| |||||||||||| | ||||| ||||
Sbjct: 242 tcaagctttaccattcaataaatgtgaactatccgcctattctggattctcgtctagaag 301
Query: 747 ctttagctgctgagctctatgc 768
|||| ||||||||||||||||
Sbjct: 302 ctttgtctgctgagctctatgc 323
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctggtgcactg 982
|||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
Sbjct: 433 tctgagctcagattggcacagcttcaacatcagctacctgctaatgaacctggtgcgtta 492
Query: 983 atgaatcttgtagaagaatcaactgccgatgatgcaga 1020
||| |||||||||||||||||||||| |||||| ||||
Sbjct: 493 atgcatcttgtagaagaatcaactgctgatgatacaga 530
>gb|BU989964.1|BU989964 HF23G23r HF Hordeum vulgare subsp. vulgare cDNA clone HF23G23
5-PRIME, mRNA sequence
Length = 666
Score = 329 bits (166), Expect = 2e-088
Identities = 283/322 (87%)
Strand = Plus / Plus
Query: 447 aacgaatccataactgccgcaggttaagccatgaatggcaagcatacatatcccgaaccc 506
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct: 30 aacgaatccataactgccgcaggttaagccatgaatggcaagcatatatttctcgaacta 89
Query: 507 attctctgaggaagacatttatttccgtgaagggcatatattatcaggccgaagttcaag 566
|||| ||| | |||||||| || || || ||||||||||| || ||||| ||||||||||
Sbjct: 90 attccctgcgaaagacattcatatctgtcaagggcatatactaccaggctgaagttcaag 149
Query: 567 gacaaaagatcacctggctaactccgcatgctcttcagcaagtattaactgatgatgttg 626
| ||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||| || |
Sbjct: 150 ggcaaaagatcacttggcttactccacatgctctccagcaagttttaactgatgacgtcg 209
Query: 627 atttcaatgtgatgctttcttttctagaattctatgagactcttctaggatttgtgaact 686
| ||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||
Sbjct: 210 acttcaatgtgatgcttacctttttggaattctatgagactcttctaggatttgtgaact 269
Query: 687 tcaaactctatcattcaataaatgtaaattatcctcctattctggatccacgtctggaag 746
|||| || || |||||||||||||| || ||||| |||||||||||| | ||||| ||||
Sbjct: 270 tcaagctttaccattcaataaatgtgaactatccgcctattctggattctcgtctagaag 329
Query: 747 ctttagctgctgagctctatgc 768
|||| ||||||||||||||||
Sbjct: 330 ctttgtctgctgagctctatgc 351
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctggtgcactg 982
|||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
Sbjct: 461 tctgagctcagattggcacagcttcaacatcagctacctgctaatgaacctggtgcgtta 520
Query: 983 atgaatcttgtagaagaatcaactgccgatgatgcaga 1020
||| |||||||||||||||||||||| |||||| ||||
Sbjct: 521 atgcatcttgtagaagaatcaactgctgatgatacaga 558
Score = 73.8 bits (37), Expect = 2e-011
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 1064 aagttctacttgagtcgagaggtgcctagggagtccctgttatttataattccagcgttt 1123
||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| || |||
Sbjct: 602 aagttctacttaagtcgtgaggttcctagggagtccctcttgtttataattccggcattt 661
Query: 1124 ggagg 1128
|||||
Sbjct: 662 ggagg 666
>gb|BU975874.1|BU975874 HB32J03r BC Hordeum vulgare subsp. vulgare cDNA clone HB32J03
5-PRIME, mRNA sequence
Length = 456
Score = 309 bits (156), Expect = 2e-082
Identities = 336/396 (84%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 61 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 120
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 121 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 180
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 181 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 240
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 241 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 300
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 301 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 360
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 361 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 420
Query: 365 cttcgtgacttggatgactgccttacaatggtgcat 400
|| | ||||||||||| ||||| || |||||||||
Sbjct: 421 ctcagagacttggatgattgcctaacgatggtgcat 456
>gb|BU980697.1|BU980697 HA21G19r HA Hordeum vulgare subsp. vulgare cDNA clone HA21G19
5-PRIME, mRNA sequence
Length = 415
Score = 309 bits (156), Expect = 2e-082
Identities = 336/396 (84%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 14 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 73
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 74 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 133
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 134 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 193
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 194 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 253
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 254 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 313
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 314 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 373
Query: 365 cttcgtgacttggatgactgccttacaatggtgcat 400
|| | ||||||||||| ||||| || |||||||||
Sbjct: 374 ctcagagacttggatgattgcctaacgatggtgcat 409
>gb|CA002499.1|CA002499 HS07L04r HS Hordeum vulgare subsp. vulgare cDNA clone HS07L04
5-PRIME, mRNA sequence
Length = 451
Score = 299 bits (151), Expect = 2e-079
Identities = 325/383 (84%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 63 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 122
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 123 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 182
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 183 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 242
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 243 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 302
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 303 aaagttaaaaaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 362
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||
Sbjct: 363 ccaccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgct 422
Query: 365 cttcgtgacttggatgactgcct 387
|| | ||||||||||| |||||
Sbjct: 423 ctcagagacttggatgattgcct 445
>gb|BQ469980.1|BQ469980 HX01G19T HX Hordeum vulgare subsp. vulgare cDNA clone HX01G19
5-PRIME, mRNA sequence
Length = 379
Score = 236 bits (119), Expect = 2e-060
Identities = 269/319 (84%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 61 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 120
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| |||||||| || ||||| || |||||
Sbjct: 121 tacctgcagattagcctcgccgtcttcaggaaactatgcatcctcaagggagtgtttccc 180
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| || ||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 181 cgggagcccaacaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 240
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| ||||||||||| || || ||||| || ||| |
Sbjct: 241 gccttccttgcgcatgaccctttgattgagaagttcagagaaatcaaggttcacagaaag 300
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| ||||| |||||| ||| ||||||||||||||||| |||||||| ||||||||||
Sbjct: 301 aaagttaataaggcttatgccaagaaaaacagggatctggcagacagattgttgaatcga 360
Query: 305 ccaccaacttacaagcttg 323
||||| |||||||| ||||
Sbjct: 361 ccaccgacttacaaacttg 379
>gb|BE215026.1|BE215026 HV_CEb0005J06f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005J06f, mRNA sequence
Length = 941
Score = 228 bits (115), Expect = 6e-058
Identities = 316/383 (82%)
Strand = Plus / Plus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 80 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 139
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| ||| |||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 140 tacctgcagattaacctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 199
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 200 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 259
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaagg 244
|| ||||| || |||||||||||||| || |||||||| || || ||||| || || |
Sbjct: 260 gccttccttgcgcatgaccctttgattgataagttcagagaaatcaaggttcacataaag 319
Query: 245 aaggttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcgg 304
|| |||||||||||| ||| ||||||||||||| ||| |||||||| ||||||||||
Sbjct: 320 aaagttaaaaaggcttatgccaagaaaaacaggggtctggcagacagattgttgaatcga 379
Query: 305 ccaccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgct 364
||||| ||||||| ||||||| ||| || ||| ||| ||| || | || |||||||||
Sbjct: 380 ccaccggcttacaaacttgatatacttatcattggaagatatgcatcttttgttgatgct 439
Query: 365 cttcgtgacttggatgactgcct 387
|| | ||||||| ||| |||||
Sbjct: 440 ctgagagacttgggtgattgcct 462
>gb|BM372681.2|BM372681 EBpi05_SQ003_K07_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_K07 5', mRNA sequence
Length = 641
Score = 224 bits (113), Expect = 9e-057
Identities = 185/209 (88%)
Strand = Plus / Plus
Query: 560 gttcaaggacaaaagatcacctggctaactccgcatgctcttcagcaagtattaactgat 619
|||||||| ||||||||||| ||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 1 gttcaagggcaaaagatcacttggcttactccacatgctctccagcaagttttaactgat 60
Query: 620 gatgttgatttcaatgtgatgctttcttttctagaattctatgagactcttctaggattt 679
|| || || ||||||||||||||| | ||| | |||||||||||||||||||||||||||
Sbjct: 61 gacgtcgacttcaatgtgatgcttacctttttggaattctatgagactcttctaggattt 120
Query: 680 gtgaacttcaaactctatcattcaataaatgtaaattatcctcctattctggatccacgt 739
||||||||||| || || |||||||||||||| || ||||| |||||||||||| | |||
Sbjct: 121 gtgaacttcaagctttaccattcaataaatgtgaactatccgcctattctggattctcgt 180
Query: 740 ctggaagctttagctgctgagctctatgc 768
|| |||||||| ||||||||||||||||
Sbjct: 181 ctagaagctttgtctgctgagctctatgc 209
Score = 194 bits (98), Expect = 8e-048
Identities = 161/182 (88%)
Strand = Plus / Plus
Query: 1064 aagttctacttgagtcgagaggtgcctagggagtccctgttatttataattccagcgttt 1123
||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| || |||
Sbjct: 460 aagttctacttaagtcgtgaggttcctagggagtccctcttgtttataattccggcattt 519
Query: 1124 ggagggactgtttcatgggaaggagaaggagctccatttaaagaaatagacgaagatatc 1183
||||| |||||||| |||||||||||||||||||||||| | |||| ||| ||||||||
Sbjct: 520 ggaggaactgtttcctgggaaggagaaggagctccatttgatgaaacagatcaagatatc 579
Query: 1184 actcaccagattgttgataggccgacacaaagccatgttttcctctccagggagtatgtt 1243
|| || ||||||||||| ||||| || || ||||||||||||||||||||| ||||||||
Sbjct: 580 acccatcagattgttgacaggccaacccagagccatgttttcctctccaggcagtatgtt 639
Query: 1244 ca 1245
||
Sbjct: 640 ca 641
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctggtgcactg 982
|||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
Sbjct: 319 tctgagctcagattggcacagcttcaacatcagctacctgctaatgaacctggtgcgtta 378
Query: 983 atgaatcttgtagaagaatcaactgccgatgatgcaga 1020
||| |||||||||||||||||||||| |||||| ||||
Sbjct: 379 atgcatcttgtagaagaatcaactgctgatgatacaga 416
>gb|BU984696.1|BU984696 HF04L10r HF Hordeum vulgare subsp. vulgare cDNA clone HF04L10
5-PRIME, mRNA sequence
Length = 601
Score = 224 bits (113), Expect = 9e-057
Identities = 185/209 (88%)
Strand = Plus / Plus
Query: 1064 aagttctacttgagtcgagaggtgcctagggagtccctgttatttataattccagcgttt 1123
||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| || |||
Sbjct: 172 aagttctacttaagtcgtgaggttcctagggagtccctcttgtttataattccggcattt 231
Query: 1124 ggagggactgtttcatgggaaggagaaggagctccatttaaagaaatagacgaagatatc 1183
||||| |||||||| |||||||||||||||||||||||| | |||| ||| ||||||||
Sbjct: 232 ggaggaactgtttcctgggaaggagaaggagctccatttgatgaaacagatcaagatatc 291
Query: 1184 actcaccagattgttgataggccgacacaaagccatgttttcctctccagggagtatgtt 1243
|| || ||||||||||| ||||| || || ||||||||||||||||||||| ||||||||
Sbjct: 292 acccatcagattgttgacaggccaacccagagccatgttttcctctccaggcagtatgtt 351
Query: 1244 caaccacagtgggtctttgattgtgtaaa 1272
|||||||| ||| | ||||||||||||||
Sbjct: 352 caaccacaatggatttttgattgtgtaaa 380
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctggtgcactg 982
|||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
Sbjct: 31 tctgagctcagattggcacagcttcaacatcagctacctgctaatgaacctggtgcgtta 90
Query: 983 atgaatcttgtagaagaatcaactgccgatgatgcaga 1020
||| |||||||||||||||||||||| |||||| ||||
Sbjct: 91 atgcatcttgtagaagaatcaactgctgatgatacaga 128
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1305 ttgttggaagagtacctccaccacatttgtctccttttgtggacaa 1350
|||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 413 ttgttggaagggtgcctccaccacatttatctccttttgtggacaa 458
>gb|BU987788.1|BU987788 HF15M08r HF Hordeum vulgare subsp. vulgare cDNA clone HF15M08
5-PRIME, mRNA sequence
Length = 536
Score = 224 bits (113), Expect = 9e-057
Identities = 185/209 (88%)
Strand = Plus / Plus
Query: 1064 aagttctacttgagtcgagaggtgcctagggagtccctgttatttataattccagcgttt 1123
||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| || |||
Sbjct: 77 aagttctacttaagtcgtgaggttcctagggagtccctcttgtttataattccggcattt 136
Query: 1124 ggagggactgtttcatgggaaggagaaggagctccatttaaagaaatagacgaagatatc 1183
||||| |||||||| |||||||||||||||||||||||| | |||| ||| ||||||||
Sbjct: 137 ggaggaactgtttcctgggaaggagaaggagctccatttgatgaaacagatcaagatatc 196
Query: 1184 actcaccagattgttgataggccgacacaaagccatgttttcctctccagggagtatgtt 1243
|| || ||||||||||| ||||| || || ||||||||||||||||||||| ||||||||
Sbjct: 197 acccatcagattgttgacaggccaacccagagccatgttttcctctccaggcagtatgtt 256
Query: 1244 caaccacagtgggtctttgattgtgtaaa 1272
|||||||| ||| | ||||||||||||||
Sbjct: 257 caaccacaatggatttttgattgtgtaaa 285
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1305 ttgttggaagagtacctccaccacatttgtctccttttgtggacaa 1350
|||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 318 ttgttggaagggtgcctccaccacatttatctccttttgtggacaa 363
>gb|CA032817.1|CA032817 HX14E17r HX Hordeum vulgare subsp. vulgare cDNA clone HX14E17
5-PRIME, mRNA sequence
Length = 642
Score = 224 bits (113), Expect = 9e-057
Identities = 185/209 (88%)
Strand = Plus / Plus
Query: 1064 aagttctacttgagtcgagaggtgcctagggagtccctgttatttataattccagcgttt 1123
||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| || |||
Sbjct: 302 aagttctacttaagtcgtgaggttcctagggagtccctcttgtttataattccggcattt 361
Query: 1124 ggagggactgtttcatgggaaggagaaggagctccatttaaagaaatagacgaagatatc 1183
||||| |||||||| |||||||||||||||||||||||| | |||| ||| ||||||||
Sbjct: 362 ggaggaactgtttcctgggaaggagaaggagctccatttgatgaaacagatcaagatatc 421
Query: 1184 actcaccagattgttgataggccgacacaaagccatgttttcctctccagggagtatgtt 1243
|| || ||||||||||| ||||| || || ||||||||||||||||||||| ||||||||
Sbjct: 422 acccatcagattgttgacaggccaacccagagccatgttttcctctccaggcagtatgtt 481
Query: 1244 caaccacagtgggtctttgattgtgtaaa 1272
|||||||| ||| | ||||||||||||||
Sbjct: 482 caaccacaatggatttttgattgtgtaaa 510
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctggtgcactg 982
|||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
Sbjct: 161 tctgagctcagattggcacagcttcaacatcagctacctgctaatgaacctggtgcgtta 220
Query: 983 atgaatcttgtagaagaatcaactgccgatgatgcaga 1020
||| |||||||||||||||||||||| |||||| ||||
Sbjct: 221 atgcatcttgtagaagaatcaactgctgatgatacaga 258
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1305 ttgttggaagagtacctccaccacatttgtctccttttgtggacaa 1350
|||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 543 ttgttggaagggtgcctccaccacatttatctccttttgtggacaa 588
Score = 44.1 bits (22), Expect = 0.019
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 727 tctggatccacgtctggaagctttagctgctgagctctatgc 768
||||||| | ||||| |||||||| ||||||||||||||||
Sbjct: 10 tctggattctcgtctagaagctttgtctgctgagctctatgc 51
>gb|BI951274.1|BI951274 HVSMEl0025F02f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0025F02f, mRNA sequence
Length = 532
Score = 220 bits (111), Expect = 1e-055
Identities = 204/234 (87%), Gaps = 1/234 (0%)
Strand = Plus / Plus
Query: 536 aagggcatatattatcaggccgaagttcaaggacaaaagatcacctggctaactccgcat 595
||||||||||| || ||||| ||||||||||| ||||||||||| ||||| ||||| |||
Sbjct: 17 aagggcatatactaccaggctgaagttcaagggcaaaagatcacttggcttactccacat 76
Query: 596 gctcttcagcaagtattaactgatgatgttgatttcaatgtgatgctttcttttctagaa 655
||||| |||||||| ||||||||||| || | ||||||||||||||| | ||| | |||
Sbjct: 77 gctctccagcaagttttaactgatgacgtcnacttcaatgtgatgcttacctttttggaa 136
Query: 656 ttctatgagactcttctaggatttgtgaacttcaaactcta-tcattcaataaatgtaaa 714
||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||
Sbjct: 137 ttctatgagactcttctaggatttgtgaacttcaagctctacccattcaatagatgtgaa 196
Query: 715 ttatcctcctattctggatccacgtctggaagctttagctgctgagctctatgc 768
||||| |||||||||||| | ||||| ||||||| ||||||||||||||||
Sbjct: 197 ctatccgcctattctggattctcgtctaaaagctttgtctgctgagctctatgc 250
Score = 83.8 bits (42), Expect = 2e-014
Identities = 84/98 (85%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctggtgcactg 982
|||||||||||||| ||||||||| ||||||||| || | |||||||||||||| |
Sbjct: 360 tctgagctcagattggcacagctttcacatcagctacctgctaatgaacctggtgcgtta 419
Query: 983 atgaatcttgtagaagaatcaactgccgatgatgcaga 1020
||| |||||||| ||||||||||||| |||||| ||||
Sbjct: 420 atgcatcttgtaaaagaatcaactgctgatgatacaga 457
>gb|BF617448.1|BF617448 HVSMEc0017G14f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0017G14f, mRNA sequence
Length = 769
Score = 218 bits (110), Expect = 6e-055
Identities = 184/209 (88%)
Strand = Plus / Plus
Query: 1064 aagttctacttgagtcgagaggtgcctagggagtccctgttatttataattccagcgttt 1123
||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| || |||
Sbjct: 435 aagttctacttaagtcgtgaggttcctagggagtccctcttgtttataattccggcattt 494
Query: 1124 ggagggactgtttcatgggaaggagaaggagctccatttaaagaaatagacgaagatatc 1183
||||| |||||||| |||||||||||||||||||||||| | |||| ||| ||||||||
Sbjct: 495 ggaggaactgtttcctgggaaggagaaggagctccatttgatgaaacagatcaagatatc 554
Query: 1184 actcaccagattgttgataggccgacacaaagccatgttttcctctccagggagtatgtt 1243
|| || ||||||||||| ||||| || || ||||||| ||||||||||||| ||||||||
Sbjct: 555 acccatcagattgttgacaggccaacccagagccatgntttcctctccaggcagtatgtt 614
Query: 1244 caaccacagtgggtctttgattgtgtaaa 1272
|||||||| ||| | ||||||||||||||
Sbjct: 615 caaccacaatggatttttgattgtgtaaa 643
Score = 194 bits (98), Expect = 8e-048
Identities = 161/182 (88%)
Strand = Plus / Plus
Query: 587 actccgcatgctcttcagcaagtattaactgatgatgttgatttcaatgtgatgctttct 646
||||| |||||||| |||||||| ||||||||||| || || ||||||||||||||| |
Sbjct: 3 actccacatgctctccagcaagttttaactgatgacgtcgacttcaatgtgatgcttacc 62
Query: 647 tttctagaattctatgagactcttctaggatttgtgaacttcaaactctatcattcaata 706
||| | |||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 63 tttttggaattctatgagactcttctaggatttgtgaacttcaagctttaccattcaata 122
Query: 707 aatgtaaattatcctcctattctggatccacgtctggaagctttagctgctgagctctat 766
||||| || ||||| |||||||||||| | ||||| |||||||| ||||||||||||||
Sbjct: 123 aatgtgaactatccgcctattctggattctcgtctagaagctttgtctgctgagctctat 182
Query: 767 gc 768
||
Sbjct: 183 gc 184
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctggtgcactg 982
|||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
Sbjct: 294 tctgagctcagattggcacagcttcaacatcagctacctgctaatgaacctggtgcgtta 353
Query: 983 atgaatcttgtagaagaatcaactgccgatgatgcaga 1020
||| |||||||||||||||||||||| |||||| ||||
Sbjct: 354 atgcatcttgtagaagaatcaactgctgatgatacaga 391
Score = 60.0 bits (30), Expect = 3e-007
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 1305 ttgttggaagagtacctccaccacatttgtctccttttgtggacaa 1350
||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 676 ttgttggaaaggtgcctccaccacatttatctccttttgtggacaa 721
>gb|BQ662895.1|BQ662895 HS04K08u HS Hordeum vulgare subsp. vulgare cDNA clone HS04K08
3-PRIME, mRNA sequence
Length = 555
Score = 196 bits (99), Expect = 2e-048
Identities = 189/219 (86%)
Strand = Plus / Minus
Query: 5 gcgggtaagaagaaggaagggaatgcggcaaagtacatcacgaggaccaaggcggtcaac 64
||||| ||||||||||| ||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 503 gcgggcaagaagaaggaggggaacgccgccaagtacatcaccaggaccaaggctgtcaag 444
Query: 65 tacctgcaagttagcctcgcaatctttaggaagctatgcattctaaagggtgtctttcca 124
|||||||| |||||||||| |||| ||||| ||||||||||| ||||| || |||||
Sbjct: 443 tacctgcagattagcctcgccgtcttcaggaaactatgcattctcaagggagtgtttccc 384
Query: 125 cgtcagccaaagaagaaggtggaagggaaccacaagacctactaccacacaaaggatatt 184
|| |||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct: 383 cgggagcccaagaagaaggtggaggggaaccacaagacctactaccacatgaaggacatc 324
Query: 185 gcattcctcgctcatgaccctttgatcgagaagttcagg 223
|| ||||| || |||||||||||||| ||||||||||||
Sbjct: 323 gccttccttgcgcatgaccctttgattgagaagttcagg 285
>gb|CA019380.1|CA019380 HV11M20r HV Hordeum vulgare subsp. vulgare cDNA clone HV11M20
5-PRIME, mRNA sequence
Length = 600
Score = 190 bits (96), Expect = 1e-046
Identities = 165/188 (87%)
Strand = Plus / Plus
Query: 581 tggctaactccgcatgctcttcagcaagtattaactgatgatgttgatttcaatgtgatg 640
||||| ||||| |||||||| |||||||| ||||||||||| || || ||||||||||||
Sbjct: 22 tggcttactccacatgctctccagcaagttttaactgatgacgtcgacttcaatgtgatg 81
Query: 641 ctttcttttctagaattctatgagactcttctaggatttgtgaacttcaaactctatcat 700
||| | ||| | |||||||||||||||||||||||||||||||||||||| | || |||
Sbjct: 82 cttacctttttggaattctatgagactcttctaggatttgtgaacttcaagatttaccat 141
Query: 701 tcaataaatgtaaattatcctcctattctggatccacgtctggaagctttagctgctgag 760
||||||||||| || ||||| |||||||||||| | ||||| |||||||| ||||||||
Sbjct: 142 tcaataaatgtgaactatccgcctattctggattctcgtctagaagctttgtctgctgag 201
Query: 761 ctctatgc 768
||||||||
Sbjct: 202 ctctatgc 209
Score = 139 bits (70), Expect = 4e-031
Identities = 120/137 (87%)
Strand = Plus / Plus
Query: 1064 aagttctacttgagtcgagaggtgcctagggagtccctgttatttataattccagcgttt 1123
||||||||||| ||||| ||||| |||||||||||||| || ||||||||||| || |||
Sbjct: 460 aagttctacttaagtcgtgaggttcctagggagtccctcttgtttataattccggcattt 519
Query: 1124 ggagggactgtttcatgggaaggagaaggagctccatttaaagaaatagacgaagatatc 1183
||||| |||||||| || ||||||||||||||||||||| | |||| ||| ||||||||
Sbjct: 520 ggaggaactgtttcctgngaaggagaaggagctccatttgatgaaacagatcaagatatc 579
Query: 1184 actcaccagattgttga 1200
|| || |||||||||||
Sbjct: 580 acccatcagattgttga 596
Score = 107 bits (54), Expect = 2e-021
Identities = 87/98 (88%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctggtgcactg 982
|||||||||||||| |||||||||||||||||||| || | |||||||||||||| |
Sbjct: 319 tctgagctcagattggcacagcttcaacatcagctacctgctaatgaacctggtgcgtta 378
Query: 983 atgaatcttgtagaagaatcaactgccgatgatgcaga 1020
||| |||||||||||||||||||||| |||||| ||||
Sbjct: 379 atgcatcttgtagaagaatcaactgctgatgatacaga 416
>gb|BG309743.1|BG309743 HVSMEc0012F02f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0012F02f, mRNA sequence
Length = 845
Score = 121 bits (61), Expect = 1e-025
Identities = 145/169 (85%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 602 cagcaagtattaactgatgatgttgatttcaatgtgatgctttcttttctag-aattcta 660
|||||||| ||||||||||| || | |||| |||||||||| | ||| | | |||||||
Sbjct: 25 cagcaagttttaactgatgacgtcaacttca-tgtgatgcttacctttttggcaattcta 83
Query: 661 tgag-actcttctaggatttgtgaacttcaaactctatcattcaataaatgtaaattatc 719
||| |||||||||||||||||||||||||| || || |||||||||||||| || ||||
Sbjct: 84 tgaatactcttctaggatttgtgaacttcaagctttaccattcaataaatgtgaactatc 143
Query: 720 ctcctattctggatccacgtctggaagctttagctgctgagctctatgc 768
| |||||||||||| | ||||| |||||||| ||||||||||||||||
Sbjct: 144 cgcctattctggattctcgtctagaagctttgtctgctgagctctatgc 192
Score = 56.0 bits (28), Expect = 5e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 923 tctgagctcagattagcacagcttcaacatcagctcccaaccaatgaacctg 974
|||||||||||||| ||||||||||| |||||||| || | ||||||||||
Sbjct: 302 tctgagctcagattggcacagcttcatcatcagctacctgctaatgaacctg 353
>gb|CA032119.1|CA032119 HX12B05r HX Hordeum vulgare subsp. vulgare cDNA clone HX12B05
5-PRIME, mRNA sequence
Length = 332
Score = 121 bits (61), Expect = 1e-025
Identities = 109/125 (87%)
Strand = Plus / Plus
Query: 49 gaccaaggcggtcaactacctgcaagttagcctcgcaatctttaggaagctatgcattct 108
||||||||| ||||| |||||||| |||||||||| |||| ||||| |||||||||||
Sbjct: 1 gaccaaggctgtcaagtacctgcagattagcctcgccgtcttcaggaaactatgcattct 60
Query: 109 aaagggtgtctttccacgtcagccaaagaagaaggtggaagggaaccacaagacctacta 168
||||| || ||||| || |||| |||||||||||||| ||||||||||||||||||||
Sbjct: 61 caagggagtgtttccccgggagcccaagaagaaggtggaggggaaccacaagacctacta 120
Query: 169 ccaca 173
|||||
Sbjct: 121 ccaca 125
Score = 113 bits (57), Expect = 2e-023
Identities = 159/193 (82%)
Strand = Plus / Plus
Query: 188 ttcctcgctcatgaccctttgatcgagaagttcagggagattaaggtccatcgaaggaag 247
||||| || |||||||||||||| |||||| ||| ||| ||||| || ||| |||
Sbjct: 140 ttccttgcgcatgaccctttgattgagaaggggggggggatcaaggttcacagaaagaaa 199
Query: 248 gttaaaaaggctgttgctaagaaaaacagggatcttgcagacaggctgttgaatcggcca 307
|||||||||||| ||| ||||||||||||||||| |||||||| ||||||||| |||
Sbjct: 200 gttaaaaaggcttatgccaagaaaaacagggatctggcagacagatagttgaatcgacca 259
Query: 308 ccaacttacaagcttgataggcttgtccttgaaaggtatccaacattcgttgatgctctt 367
|| |||||||| |||||||| ||| || ||||||| |||||| | || |||||||||||
Sbjct: 260 ccgacttacaaacttgatagacttatcattgaaagatatccatcttttgttgatgctctc 319
Query: 368 cgtgacttggatg 380
| ||||||||||
Sbjct: 320 agagacttggatg 332
>gb|AV913998.1|AV913998 AV913998 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4b09 5', mRNA sequence
Length = 577
Score = 119 bits (60), Expect = 4e-025
Identities = 134/155 (86%), Gaps = 3/155 (1%)
Strand = Plus / Plus
Query: 1121 tttggagggactgtttcatggg-aagg-agaaggagctccatttaaagaaatag-acgaa 1177
|||||| | |||||||| |||| |||| |||||||||||||||| | |||| || | ||
Sbjct: 7 tttggangaactgtttcctgggnaaggtagaaggagctccatttgatgaaacagcatcaa 66
Query: 1178 gatatcactcaccagattgttgataggccgacacaaagccatgttttcctctccagggag 1237
|||||||| || ||||||||||| ||||| || || ||||||||||||||||||||| ||
Sbjct: 67 gatatcacccatcagattgttgacaggccaacccagagccatgttttcctctccaggcag 126
Query: 1238 tatgttcaaccacagtgggtctttgattgtgtaaa 1272
|||||||||||||| ||| | ||||||||||||||
Sbjct: 127 tatgttcaaccacaatggatttttgattgtgtaaa 161
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1305 ttgttggaagagtacctccaccacatttgtctccttttgtggacaa 1350
|||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 194 ttgttggaagggtgcctccaccacatttatctccttttgtggacaa 239
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1507 tgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgatgaactgaagaa 1566
|||| ||||||||||| || |||||| || ||||||| ||||| ||| || |||||||
Sbjct: 381 tgctaaaaagaagagggagttggagaagcaagagaagaaataccacgacgagctgaagat 440
Query: 1567 ggaaattga 1575
|||||||||
Sbjct: 441 ggaaattga 449
>gb|CV059766.1|CV059766 BNEL50g10 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL50g10 5' similar to Zea mays PCO136431
mRNA sequence
Length = 589
Score = 101 bits (51), Expect = 9e-020
Identities = 75/83 (90%)
Strand = Plus / Plus
Query: 1190 cagattgttgataggccgacacaaagccatgttttcctctccagggagtatgttcaacca 1249
||||||||||| ||||| || || ||||||||||||||||||||| ||||||||||||||
Sbjct: 2 cagattgttgacaggccaacccagagccatgttttcctctccaggcagtatgttcaacca 61
Query: 1250 cagtgggtctttgattgtgtaaa 1272
|| ||| | ||||||||||||||
Sbjct: 62 caatggatttttgattgtgtaaa 84
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1305 ttgttggaagagtacctccaccacatttgtctccttttgtggacaa 1350
|||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 117 ttgttggaagggtgcctccaccacatttatctccttttgtggacaa 162
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1507 tgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgatgaactgaagaa 1566
|||| ||||||||||| || |||||| || ||||||| ||||| ||| || |||||||
Sbjct: 304 tgctaaaaagaagagggagttggagaagcaagagaagaaataccacgacgagctgaagat 363
Query: 1567 ggaaattga 1575
|||||||||
Sbjct: 364 ggaaattga 372
>gb|BQ756325.1|BQ756325 EBem07_SQ003_K24_R embryo, 28 DPA, no treatment, cv Optic, EBem07
Hordeum vulgare subsp. vulgare cDNA clone
EBem07_SQ003_K24 5', mRNA sequence
Length = 198
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1305 ttgttggaagagtacctccaccacatttgtctccttttgtggacaa 1350
|||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 71 ttgttggaagggtgcctccaccacatttatctccttttgtggacaa 116
Score = 50.1 bits (25), Expect = 3e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 1236 agtatgttcaaccacagtgggtctttgattgtgtaaa 1272
|||||||||||||||| ||| | ||||||||||||||
Sbjct: 2 agtatgttcaaccacaatggatttttgattgtgtaaa 38
>gb|BU987870.1|BU987870 HF16A02r HF Hordeum vulgare subsp. vulgare cDNA clone HF16A02
5-PRIME, mRNA sequence
Length = 620
Score = 67.9 bits (34), Expect = 1e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 1305 ttgttggaagagtacctccaccacatttgtctccttttgtggacaa 1350
|||||||||| || |||||||||||||| |||||||||||||||||
Sbjct: 44 ttgttggaagggtgcctccaccacatttatctccttttgtggacaa 89
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1507 tgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgatgaactgaagaa 1566
|||| ||||||||||| || |||||| || ||||||| ||||| ||| || |||||||
Sbjct: 231 tgctaaaaagaagagggagttggagaagcaagagaagaaataccacgacgagctgaagat 290
Query: 1567 ggaaattga 1575
|||||||||
Sbjct: 291 ggaaattga 299
>gb|BM372155.1|BM372155 EBro03_SQ004_C20_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ004_C20 5', mRNA sequence
Length = 396
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1507 tgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgatgaactgaagaa 1566
|||| ||||||||||| || |||||| || ||||||| ||||| ||| || |||||||
Sbjct: 56 tgctaaaaagaagagggagttggagaagcaagagaagaaataccacgacgagctgaagat 115
Query: 1567 ggaaattga 1575
|||||||||
Sbjct: 116 ggaaattga 124
>gb|AV919022.1|AV919022 AV919022 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags4b09 3', mRNA sequence
Length = 613
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1507 tgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgatgaactgaagaa 1566
|||| ||||||||||| || |||||| || ||||||| ||||| ||| || |||||||
Sbjct: 459 tgctaaaaagaagagggagttggagaagcaagagaagaaataccacgacgagctgaagat 400
Query: 1567 ggaaattga 1575
|||||||||
Sbjct: 399 ggaaattga 391
>gb|BQ757457.1|BQ757457 EBem10_SQ004_D02_R embryo, 2 Day germination, no treatment, cv Optic,
EBem10 Hordeum vulgare subsp. vulgare cDNA clone
EBem10_SQ004_D02 5', mRNA sequence
Length = 395
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1507 tgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgatgaactgaagaa 1566
|||| ||||||||||| || |||||| || ||||||| ||||| ||| || |||||||
Sbjct: 87 tgctaaaaagaagagggagttggagaagcaagagaagaaataccacgacgagctgaagat 146
Query: 1567 ggaaattga 1575
|||||||||
Sbjct: 147 ggaaattga 155
>gb|BU986383.1|BU986383 HF11K12r HF Hordeum vulgare subsp. vulgare cDNA clone HF11K12
5-PRIME, mRNA sequence
Length = 609
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 1507 tgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgatgaactgaagaa 1566
|||| ||||||||||| || |||||| || ||||||| ||||| ||| || |||||||
Sbjct: 116 tgctaaaaagaagagggagttggagaagcaagagaagaaataccacgacgagctgaagat 175
Query: 1567 ggaaattga 1575
|||||||||
Sbjct: 176 ggaaattga 184
>gb|CB874526.1|CB874526 HX05I14w HX Hordeum vulgare subsp. vulgare cDNA clone HX05I14
3-PRIME, mRNA sequence
Length = 550
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1507 tgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgatgaactgaagaa 1566
|||| ||||||||||| || |||||| || ||||||| ||||| ||| || |||||||
Sbjct: 498 tgctaaaaagaagagggagttggagaagcaagagaagaaataccacgacgagctgaagat 439
Query: 1567 ggaaattga 1575
|||||||||
Sbjct: 438 ggaaattga 430
>gb|CB875602.1|CB875602 HX08M21w HX Hordeum vulgare subsp. vulgare cDNA clone HX08M21
3-PRIME, mRNA sequence
Length = 557
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 1507 tgctgaaaagaagaggaagctggagatgctagagaagcaatacatcgatgaactgaagaa 1566
|||| ||||||||||| || |||||| || ||||||| ||||| ||| || |||||||
Sbjct: 497 tgctaaaaagaagagggagttggagaagcaagagaagaaataccacgacgagctgaagat 438
Query: 1567 ggaaattga 1575
|||||||||
Sbjct: 437 ggaaattga 429
>gb|BJ474313.1|BJ474313 BJ474313 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal13b24 3', mRNA sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1680 aggatgatgatgatgatatt 1699
||||||||||||||||||||
Sbjct: 71 aggatgatgatgatgatatt 90
>gb|BU979026.1|BU979026 HA14P04r HA Hordeum vulgare subsp. vulgare cDNA clone HA14P04
5-PRIME, mRNA sequence
Length = 525
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1680 aggatgatgatgatgatatt 1699
||||||||||||||||||||
Sbjct: 506 aggatgatgatgatgatatt 487
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,188
Number of Sequences: 312970
Number of extensions: 228188
Number of successful extensions: 70203
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70081
Number of HSP's gapped (non-prelim): 102
length of query: 2118
length of database: 175,134,539
effective HSP length: 20
effective length of query: 2098
effective length of database: 168,875,139
effective search space: 354300041622
effective search space used: 354300041622
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)