BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635788.2.1
(753 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF618284.2|BF618284 HVSMEc0005E05f Hordeum vulgare seedl... 305 1e-081
gb|BG300636.1|BG300636 HVSMEb0017M06f Hordeum vulgare seedl... 60 1e-007
gb|BG344696.1|BG344696 HVSMEg0015C23f Hordeum vulgare pre-a... 60 1e-007
gb|BI959363.1|BI959363 HVSMEn0019G03f Hordeum vulgare rachi... 60 1e-007
gb|BI959905.1|BI959905 HVSMEn0022F07f Hordeum vulgare rachi... 60 1e-007
gb|BI958208.1|BI958208 HVSMEn0013N21f Hordeum vulgare rachi... 54 7e-006
gb|BI956814.1|BI956814 HVSMEn0005H05f Hordeum vulgare rachi... 52 3e-005
gb|BF628401.2|BF628401 HVSMEb0003O23f Hordeum vulgare seedl... 46 0.002
gb|BI958419.1|BI958419 HVSMEn0014O09f Hordeum vulgare rachi... 44 0.007
gb|BF259737.3|BF259737 HVSMEf0020C02f Hordeum vulgare seedl... 44 0.007
gb|BQ763227.1|BQ763227 EBro02_SQ007_J17_R root, 3 week, hyd... 44 0.007
gb|CA007155.1|CA007155 HU06P08r HU Hordeum vulgare subsp. v... 44 0.007
gb|BF625867.2|BF625867 HVSMEa0013O20f Hordeum vulgare seedl... 42 0.026
gb|BI958485.1|BI958485 HVSMEn0015E05f Hordeum vulgare rachi... 42 0.026
gb|CA019935.1|CA019935 HV13M18r HV Hordeum vulgare subsp. v... 42 0.026
gb|AL507061.1|AL507061 AL507061 Hordeum vulgare Barke devel... 40 0.10
gb|AL509070.1|AL509070 AL509070 Hordeum vulgare Barke devel... 40 0.10
gb|BG300462.2|BG300462 HVSMEb0017C07f Hordeum vulgare seedl... 40 0.10
gb|BG300743.2|BG300743 HVSMEb0018D17f Hordeum vulgare seedl... 40 0.10
gb|BF254096.3|BF254096 HVSMEf0003A06f Hordeum vulgare seedl... 40 0.10
gb|AW982482.3|AW982482 HVSMEg0003G05f Hordeum vulgare pre-a... 40 0.10
gb|BE060796.3|BE060796 HVSMEg0013G09f Hordeum vulgare pre-a... 40 0.10
gb|BE455600.3|BE455600 HVSMEg0018B10f Hordeum vulgare pre-a... 40 0.10
gb|BG418559.2|BG418559 HVSMEk0023C06f Hordeum vulgare testa... 40 0.10
gb|BQ458958.1|BQ458958 HA02L23r HA Hordeum vulgare subsp. v... 40 0.10
gb|BQ459604.1|BQ459604 HA08K08r HA Hordeum vulgare subsp. v... 40 0.10
gb|BQ459675.1|BQ459675 HA08G08r HA Hordeum vulgare subsp. v... 40 0.10
gb|BQ459806.1|BQ459806 HA08A17r HA Hordeum vulgare subsp. v... 40 0.10
gb|BQ460936.1|BQ460936 HE01L13r HE Hordeum vulgare subsp. v... 40 0.10
gb|BQ462925.1|BQ462925 HI02H05r HI Hordeum vulgare subsp. v... 40 0.10
gb|BQ656308.1|BQ656308 HA04P18u HA Hordeum vulgare subsp. v... 40 0.10
gb|BQ657275.1|BQ657275 HA08P19u HA Hordeum vulgare subsp. v... 40 0.10
gb|BQ657367.1|BQ657367 HA08K08u HA Hordeum vulgare subsp. v... 40 0.10
gb|BQ659531.1|BQ659531 HE01L13u HE Hordeum vulgare subsp. v... 40 0.10
gb|BQ660419.1|BQ660419 HI02H05u HI Hordeum vulgare subsp. v... 40 0.10
gb|BM368107.2|BM368107 EBed01_SQ002_D05_R endosperm, 6 DPA,... 40 0.10
gb|BM097641.2|BM097641 EBem04_SQ002_E17_R embryo, 12 DPA, n... 40 0.10
gb|BM097856.2|BM097856 EBem04_SQ002_O11_R embryo, 12 DPA, n... 40 0.10
gb|BM376546.2|BM376546 EBem05_SQ002_I14_R embryo, 14 DPA, n... 40 0.10
gb|BM376564.2|BM376564 EBem05_SQ002_J09_R embryo, 14 DPA, n... 40 0.10
gb|BM375463.2|BM375463 EBem06_SQ003_G23_R embryo, 21 DPA, n... 40 0.10
gb|BI780644.2|BI780644 EBes01_SQ001_J19_R embryo sac, 4-6 D... 40 0.10
gb|BM099812.2|BM099812 EBes01_SQ004_F15_R embryo sac, 4-6 D... 40 0.10
gb|BM100628.2|BM100628 EBma01_SQ005_M10_R maternal, 4 DPA, ... 40 0.10
gb|BM374169.2|BM374169 EBma03_SQ003_N14_R maternal, 8 DPA, ... 40 0.10
gb|BI778732.2|BI778732 EBro01_SQ001_E06_R root, 3 week, hyd... 40 0.10
gb|BQ754551.1|BQ754551 EBed01_SQ003_C02_R endosperm, 6 DPA,... 40 0.10
gb|BQ759749.1|BQ759749 EBpi05_SQ004_D11_R pistil, 8 DPA, no... 40 0.10
gb|BQ767014.1|BQ767014 EBro08_SQ007_B19_R root, 3 week, dro... 40 0.10
gb|BQ767802.1|BQ767802 EBro08_SQ009_K20_R root, 3 week, dro... 40 0.10
gb|BU967620.1|BU967620 HB04N21r BC Hordeum vulgare subsp. v... 40 0.10
gb|BU976197.1|BU976197 HA03F02r HA Hordeum vulgare subsp. v... 40 0.10
gb|BU976198.1|BU976198 HA03F02u HA Hordeum vulgare subsp. v... 40 0.10
gb|BU977854.1|BU977854 HA12C14r HA Hordeum vulgare subsp. v... 40 0.10
gb|BU978624.1|BU978624 HA13M12r HA Hordeum vulgare subsp. v... 40 0.10
gb|BU979516.1|BU979516 HA16G16r HA Hordeum vulgare subsp. v... 40 0.10
gb|BU979716.1|BU979716 HA17A16r HA Hordeum vulgare subsp. v... 40 0.10
gb|BU979924.1|BU979924 HA17N04r HA Hordeum vulgare subsp. v... 40 0.10
gb|BU980666.1|BU980666 HA21F08r HA Hordeum vulgare subsp. v... 40 0.10
gb|BU983269.1|BU983269 HA29C08r HA Hordeum vulgare subsp. v... 40 0.10
gb|BU983681.1|BU983681 HA30K05r HA Hordeum vulgare subsp. v... 40 0.10
gb|BU998943.1|BU998943 HI12K16r HI Hordeum vulgare subsp. v... 40 0.10
gb|BU999422.1|BU999422 HI14H09r HI Hordeum vulgare subsp. v... 40 0.10
gb|CA000847.1|CA000847 HS06M08u HS Hordeum vulgare subsp. v... 40 0.10
gb|CA002184.1|CA002184 HS06M08r HS Hordeum vulgare subsp. v... 40 0.10
gb|CA004151.1|CA004151 HS16L16r HS Hordeum vulgare subsp. v... 40 0.10
gb|CA005826.1|CA005826 HU08D11u HU Hordeum vulgare subsp. v... 40 0.10
gb|CA012215.1|CA012215 HT04M17r HT Hordeum vulgare subsp. v... 40 0.10
gb|CA014353.1|CA014353 HT11B21r HT Hordeum vulgare subsp. v... 40 0.10
gb|CA018186.1|CA018186 HV07O01r HV Hordeum vulgare subsp. v... 40 0.10
gb|CA019197.1|CA019197 HV11C20r HV Hordeum vulgare subsp. v... 40 0.10
gb|CA024661.1|CA024661 HZ49P02r HZ Hordeum vulgare subsp. v... 40 0.10
gb|CA024769.1|CA024769 HZ50E03r HZ Hordeum vulgare subsp. v... 40 0.10
gb|CA026693.1|CA026693 HZ56K15r HZ Hordeum vulgare subsp. v... 40 0.10
gb|CA028149.1|CA028149 HZ61C08r HZ Hordeum vulgare subsp. v... 40 0.10
gb|CA028621.1|CA028621 HZ62K14r HZ Hordeum vulgare subsp. v... 40 0.10
gb|CA028942.1|CA028942 HZ63L05r HZ Hordeum vulgare subsp. v... 40 0.10
gb|CA031072.1|CA031072 HX08O22r HX Hordeum vulgare subsp. v... 40 0.10
gb|CB860102.1|CB860102 HI12K16w HI Hordeum vulgare subsp. v... 40 0.10
gb|CB875643.1|CB875643 HX08O22w HX Hordeum vulgare subsp. v... 40 0.10
gb|CB883569.1|CB883569 HQ02K12w HQ Hordeum vulgare subsp. v... 40 0.10
gb|CV053818.1|CV053818 BNEL103e4 Barley EST endosperm libra... 40 0.10
gb|CV056345.1|CV056345 BNEL16F6 Barley EST endosperm librar... 40 0.10
gb|CV058341.1|CV058341 BNEL37a4 Barley EST endosperm librar... 40 0.10
gb|CV058526.1|CV058526 BNEL39a10 Barley EST endosperm libra... 40 0.10
gb|CV060266.1|CV060266 BNEL56c3 Barley EST endosperm librar... 40 0.10
gb|CV060344.1|CV060344 BNEL57b10 Barley EST endosperm libra... 40 0.10
gb|CV061361.1|CV061361 BNEL67h8 Barley EST endosperm librar... 40 0.10
gb|CV063341.1|CV063341 BNEL89c3 Barley EST endosperm librar... 40 0.10
gb|CV063444.1|CV063444 BNEL8D2 Barley EST endosperm library... 40 0.10
gb|CK122911.1|CK122911 BES1824101d03 BES1824 Hordeum vulgar... 40 0.10
gb|CK124134.1|CK124134 BES1824107c19 BES1824 Hordeum vulgar... 40 0.10
gb|CK124193.1|CK124193 BES1824107f18 BES1824 Hordeum vulgar... 40 0.10
gb|CK124222.1|CK124222 BES1824108a13 BES1824 Hordeum vulgar... 40 0.10
gb|CK124884.1|CK124884 BES1824110o17 BES1824 Hordeum vulgar... 40 0.10
gb|AL450738.1|AL450738 AL450738 Hordeum vulgare Barke etiol... 38 0.41
gb|BI947782.1|BI947782 HVSMEl0006O22f Hordeum vulgare spike... 38 0.41
gb|BI958098.1|BI958098 HVSMEn0013F17f Hordeum vulgare rachi... 38 0.41
gb|BI959579.1|BI959579 HVSMEn0020E13f Hordeum vulgare rachi... 38 0.41
gb|BJ456796.1|BJ456796 BJ456796 K. Sato unpublished cDNA li... 38 0.41
gb|BM442512.2|BM442512 EBan01_SQ003_G06_R anther, yellow st... 38 0.41
gb|BQ753666.1|BQ753666 EBan01_SQ004_O09_R anther, yellow st... 38 0.41
gb|BQ756227.1|BQ756227 EBem06_SQ002_D23_R embryo, 21 DPA, n... 38 0.41
gb|BQ764236.1|BQ764236 EBan01_SQ005_C11_R anther, yellow st... 38 0.41
gb|CA003220.1|CA003220 HS09M11r HS Hordeum vulgare subsp. v... 38 0.41
gb|CB877633.1|CB877633 HP05K08T HP Hordeum vulgare subsp. v... 38 0.41
gb|CB878624.1|CB878624 HP09D09T HP Hordeum vulgare subsp. v... 38 0.41
>gb|BF618284.2|BF618284 HVSMEc0005E05f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0005E05f, mRNA sequence
Length = 669
Score = 305 bits (154), Expect = 1e-081
Identities = 288/332 (86%), Gaps = 3/332 (0%)
Strand = Plus / Plus
Query: 172 aagaccatcacggcgatcctgagcaaggccgggcagttcaccaagttcctccagctgctg 231
||||| |||| |||| | |||| |||||||||||||||||||||||||||||||||||||
Sbjct: 112 aagacgatcaaggcggtgctgaccaaggccgggcagttcaccaagttcctccagctgctg 171
Query: 232 cagtcgacgcgggaggcggagcagatcaccaaccagctcaagggcaag---ccgtccaac 288
|||||||| | ||||| |||||||||| || |||||||||||||||| |||||| |
Sbjct: 172 cagtcgacacaggaggaggagcagatcgacacccagctcaagggcaaggcctcgtccagc 231
Query: 289 ggcgggctcacggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacg 348
||||| ||||| || ||||||||||| |||| ||||||| |||||||| ||||| |
Sbjct: 232 ggcggcctcaccgtcttcgcgccgccggacaacgccttcaccgcgctcaagtccggctcc 291
Query: 349 ctcaactccctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcg 408
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| |
Sbjct: 292 ctcaactccctctccgaccaacagaagacgtcgctggtgcagttccacgtggtctcccag 351
Query: 409 gcgctccccgccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggctggcgac 468
||||||| |||||| |||| || || ||||||||||||||||||||||| ||||||
Sbjct: 352 ctgctccccatggcgcagttcgacacggtgagcaacccgctgcggacgcaggccggcgac 411
Query: 469 accggcaggggcaagtacccgctcaacctcac 500
||||||||||||||||||||||||||| ||||
Sbjct: 412 accggcaggggcaagtacccgctcaacgtcac 443
Score = 52.0 bits (26), Expect = 3e-005
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 563 cgctttacgccggggacaggctcgtcgtctaccaggtcagcaaggtgctgctgccgtggg 622
|||| ||| |||| |||||||| || || |||||||| ||||||| |||| |||||||
Sbjct: 506 cgctctacaccggcgacaggctggtggtgtaccaggtggacaaggtgttgcttccgtggg 565
Query: 623 cgctctacgg 632
||||||||||
Sbjct: 566 cgctctacgg 575
>gb|BG300636.1|BG300636 HVSMEb0017M06f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017M06f, mRNA sequence
Length = 589
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 195 caaggccgggcagttcaccaagttcctccagctgctgcagtcgacgcgggaggcggagca 254
||||||||||||||||| || |||| ||| |||||| |||||||| | | ||||| |||
Sbjct: 183 caaggccgggcagttcaacacgttcatccggctgctcaagtcgacgggcgtggcggcgca 242
Query: 255 gatcaccaaccagctcaa 272
|||| ||||||||||||
Sbjct: 243 gatcgacaaccagctcaa 260
Score = 40.1 bits (20), Expect = 0.10
Identities = 47/56 (83%)
Strand = Plus / Plus
Query: 301 gtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgctcaactc 356
||||||||||| | |||| ||||||| || ||||| || |||||||||||||||
Sbjct: 286 gtgttcgcgcccacggacaacgccttcacctcgctcgcctgcggcacgctcaactc 341
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 477 gggcaagtacccgctcaacctcaccgc 503
|||| |||||||||||||| |||||||
Sbjct: 462 gggccagtacccgctcaacgtcaccgc 488
>gb|BG344696.1|BG344696 HVSMEg0015C23f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0015C23f, mRNA sequence
Length = 888
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 195 caaggccgggcagttcaccaagttcctccagctgctgcagtcgacgcgggaggcggagca 254
||||||||||||||||| || |||| ||| |||||| |||||||| | | ||||| |||
Sbjct: 204 caaggccgggcagttcaacacgttcatccggctgctcaagtcgacgggcgtggcggcgca 263
Query: 255 gatcaccaaccagctcaa 272
|||| ||||||||||||
Sbjct: 264 gatcgacaaccagctcaa 281
Score = 48.1 bits (24), Expect = 4e-004
Identities = 129/164 (78%)
Strand = Plus / Plus
Query: 298 acggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgctcaactcc 357
|||||||||||||| | |||| ||||||| || ||||| || |||||||||||||||
Sbjct: 304 acggtgttcgcgcccacggacaacgccttcacctcgctcgcctacggcacgctcaactcg 363
Query: 358 ctctccgaccagcagaagacgtcgctggtgcagttccacgtcgtgtccgcggcgctcccc 417
|| || ||| ||||||| ||||| | |||| ||||||| | ||| | || |||||
Sbjct: 364 ctgtcggacagccagaagaacgcgctgatccagtaccacgtcctctccaccgccatcccc 423
Query: 418 gccgcgcagctcgagaccgtcagcaacccgctgcggacgcaggc 461
||||| |||| ||||| ||||||||||| |||||||||||
Sbjct: 424 atgtcgcagttcgacaccgtgagcaacccgctccggacgcaggc 467
Score = 44.1 bits (22), Expect = 0.007
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagcaacccgctgcggacgcaggctggcgacaccggcaggggca 481
||||| |||| ||||| ||||||||||| ||||||||||| ||| || | ||||
Sbjct: 428 cgcagttcgacaccgtgagcaacccgctccggacgcaggccggcagcagctcgccgggcc 487
Query: 482 agtacccgctcaacctcaccgc 503
|||||||||||||| |||||||
Sbjct: 488 agtacccgctcaacgtcaccgc 509
>gb|BI959363.1|BI959363 HVSMEn0019G03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019G03f, mRNA sequence
Length = 688
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 195 caaggccgggcagttcaccaagttcctccagctgctgcagtcgacgcgggaggcggagca 254
||||||||||||||||| || |||| ||| |||||| |||||||| | | ||||| |||
Sbjct: 192 caaggccgggcagttcaacacgttcatccggctgctcaagtcgacgggcgtggcggcgca 251
Query: 255 gatcaccaaccagctcaa 272
|||| ||||||||||||
Sbjct: 252 gatcgacaaccagctcaa 269
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 298 acggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgctcaactc 356
|||||||||||||| | |||| ||||||| || ||||| || ||||||||||||||||
Sbjct: 292 acggtgttcgcgcccacggacaacgccttcacctcgctcgcctccggcacgctcaactc 350
>gb|BI959905.1|BI959905 HVSMEn0022F07f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0022F07f, mRNA sequence
Length = 646
Score = 60.0 bits (30), Expect = 1e-007
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 195 caaggccgggcagttcaccaagttcctccagctgctgcagtcgacgcgggaggcggagca 254
||||||||||||||||| || |||| ||| |||||| |||||||| | | ||||| |||
Sbjct: 196 caaggccgggcagttcaacacgttcatccggctgctcaagtcgacgggcgtggcggcgca 255
Query: 255 gatcaccaaccagctcaa 272
|||| ||||||||||||
Sbjct: 256 gatcgacaaccagctcaa 273
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 298 acggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgctcaactc 356
|||||||||||||| | |||| ||||||| || ||||| || ||||||||||||||||
Sbjct: 296 acggtgttcgcgcccacggacaacgccttcacctcgctcgcctccggcacgctcaactc 354
>gb|BI958208.1|BI958208 HVSMEn0013N21f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0013N21f, mRNA sequence
Length = 908
Score = 54.0 bits (27), Expect = 7e-006
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 298 acggtgttcgcgccgcccgacagcgccttctccgcgctccccgccggcacgctcaactc 356
|||||||||||||| | |||| ||||||| || ||||| || ||||||||||||||||
Sbjct: 299 acggtgttcgcgcccacggacaacgccttcacctcgctcgcctccggcacgctcaactc 357
>gb|BI956814.1|BI956814 HVSMEn0005H05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005H05f, mRNA sequence
Length = 854
Score = 52.0 bits (26), Expect = 3e-005
Identities = 65/78 (83%)
Strand = Plus / Plus
Query: 195 caaggccgggcagttcaccaagttcctccagctgctgcagtcgacgcgggaggcggagca 254
||||||||||||||||| || |||| ||| |||||| |||||||| | | ||||| |||
Sbjct: 184 caaggccgggcagttcaacacgttcatccggctgctcaagtcgacgggcgtggcggcgca 243
Query: 255 gatcaccaaccagctcaa 272
|||| | ||||||||||
Sbjct: 244 gatcgacgaccagctcaa 261
>gb|BF628401.2|BF628401 HVSMEb0003O23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0003O23f, mRNA sequence
Length = 497
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 439 agcaacccgctgcggacgcaggc 461
|||||||||||||||||||||||
Sbjct: 444 agcaacccgctgcggacgcaggc 466
>gb|BI958419.1|BI958419 HVSMEn0014O09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014O09f, mRNA sequence
Length = 666
Score = 44.1 bits (22), Expect = 0.007
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 196 aaggccgggcagttcaccaagttcctccagctgctgcagtcgacgc 241
||||||||||||| |||||||||| ||| |||| || ||||||||
Sbjct: 223 aaggccgggcagtacaccaagttcatccggctgatggcgtcgacgc 268
>gb|BF259737.3|BF259737 HVSMEf0020C02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0020C02f, mRNA sequence
Length = 809
Score = 44.1 bits (22), Expect = 0.007
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 196 aaggccgggcagttcaccaagttcctccagctgctgcagtcgacgc 241
||||||||||||| |||||||||| ||| |||| || ||||||||
Sbjct: 216 aaggccgggcagtacaccaagttcatccggctgatggcgtcgacgc 261
>gb|BQ763227.1|BQ763227 EBro02_SQ007_J17_R root, 3 week, hydroponic grown, low nitrogen, cv
Optic, EBro02 Hordeum vulgare subsp. vulgare cDNA clone
EBro02_SQ007_J17 5', mRNA sequence
Length = 581
Score = 44.1 bits (22), Expect = 0.007
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 196 aaggccgggcagttcaccaagttcctccagctgctgcagtcgacgc 241
||||||||||||| |||||||||| ||| |||| || ||||||||
Sbjct: 218 aaggccgggcagtacaccaagttcatccggctgatggcgtcgacgc 263
>gb|CA007155.1|CA007155 HU06P08r HU Hordeum vulgare subsp. vulgare cDNA clone HU06P08
5-PRIME, mRNA sequence
Length = 396
Score = 44.1 bits (22), Expect = 0.007
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 196 aaggccgggcagttcaccaagttcctccagctgctgcagtcgacgc 241
||||||||||||| |||||||||| ||| |||| || ||||||||
Sbjct: 17 aaggccgggcagtacaccaagttcatccggctgatggcgtcgacgc 62
>gb|BF625867.2|BF625867 HVSMEa0013O20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0013O20f, mRNA sequence
Length = 516
Score = 42.1 bits (21), Expect = 0.026
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 196 aaggccgggcagttcaccaagttcctccagctg 228
||||||||||||| |||||||||| ||| ||||
Sbjct: 227 aaggccgggcagtacaccaagttcatccggctg 259
>gb|BI958485.1|BI958485 HVSMEn0015E05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0015E05f, mRNA sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.026
Identities = 60/71 (84%), Gaps = 4/71 (5%)
Strand = Plus / Plus
Query: 477 gggcaagtacccgctcaacctcaccgcggacggctccagc--gtcaacgtctccacgggg 534
|||| |||||||||||||| ||||||| || || ||||| |||||| || |||| |||
Sbjct: 36 gggccagtacccgctcaacgtcaccgccgaggg--ccagcaggtcaacatcaccaccggg 93
Query: 535 gtcgtcaacgc 545
|||||||||||
Sbjct: 94 gtcgtcaacgc 104
>gb|CA019935.1|CA019935 HV13M18r HV Hordeum vulgare subsp. vulgare cDNA clone HV13M18
5-PRIME, mRNA sequence
Length = 537
Score = 42.1 bits (21), Expect = 0.026
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 668 agagcaagaagaagaagaagg 688
|||||||||||||||||||||
Sbjct: 13 agagcaagaagaagaagaagg 33
>gb|AL507061.1|AL507061 AL507061 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05C16T 5',
mRNA sequence
Length = 686
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 183 caagaagaagaagaaggcca 202
>gb|AL509070.1|AL509070 AL509070 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10K02V 5',
mRNA sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 731 cggcggggacgacgacggcg 750
||||||||||||||||||||
Sbjct: 69 cggcggggacgacgacggcg 88
>gb|BG300462.2|BG300462 HVSMEb0017C07f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017C07f, mRNA sequence
Length = 909
Score = 40.1 bits (20), Expect = 0.10
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 196 aaggccgggcagttcaccaagttc 219
||||||||||||| ||||||||||
Sbjct: 216 aaggccgggcagtacaccaagttc 239
>gb|BG300743.2|BG300743 HVSMEb0018D17f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0018D17f, mRNA sequence
Length = 541
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagc 441
||||||||||||||||||||
Sbjct: 15 cgcagctcgagaccgtcagc 34
>gb|BF254096.3|BF254096 HVSMEf0003A06f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003A06f, mRNA sequence
Length = 824
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 163 caagaagaagaagaaggcca 182
>gb|AW982482.3|AW982482 HVSMEg0003G05f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0003G05f, mRNA sequence
Length = 873
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 193 caagaagaagaagaaggcca 212
>gb|BE060796.3|BE060796 HVSMEg0013G09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0013G09f, mRNA sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagc 441
||||||||||||||||||||
Sbjct: 35 cgcagctcgagaccgtcagc 54
>gb|BE455600.3|BE455600 HVSMEg0018B10f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018B10f, mRNA sequence
Length = 587
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 192 caagaagaagaagaaggcca 211
>gb|BG418559.2|BG418559 HVSMEk0023C06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0023C06f, mRNA sequence
Length = 608
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 103 caagaagaagaagaaggcca 122
>gb|BQ458958.1|BQ458958 HA02L23r HA Hordeum vulgare subsp. vulgare cDNA clone HA02L23
5-PRIME, mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 208 caagaagaagaagaaggcca 227
>gb|BQ459604.1|BQ459604 HA08K08r HA Hordeum vulgare subsp. vulgare cDNA clone HA08K08
5-PRIME, mRNA sequence
Length = 547
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 183 caagaagaagaagaaggcca 202
>gb|BQ459675.1|BQ459675 HA08G08r HA Hordeum vulgare subsp. vulgare cDNA clone HA08G08
5-PRIME, mRNA sequence
Length = 532
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 210 caagaagaagaagaaggcca 229
>gb|BQ459806.1|BQ459806 HA08A17r HA Hordeum vulgare subsp. vulgare cDNA clone HA08A17
5-PRIME, mRNA sequence
Length = 514
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 204 caagaagaagaagaaggcca 223
>gb|BQ460936.1|BQ460936 HE01L13r HE Hordeum vulgare subsp. vulgare cDNA clone HE01L13
5-PRIME, mRNA sequence
Length = 471
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 195 caagaagaagaagaaggcca 214
>gb|BQ462925.1|BQ462925 HI02H05r HI Hordeum vulgare subsp. vulgare cDNA clone HI02H05
5-PRIME, mRNA sequence
Length = 520
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 210 caagaagaagaagaaggcca 229
>gb|BQ656308.1|BQ656308 HA04P18u HA Hordeum vulgare subsp. vulgare cDNA clone HA04P18
3-PRIME, mRNA sequence
Length = 495
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 467 caagaagaagaagaaggcca 448
>gb|BQ657275.1|BQ657275 HA08P19u HA Hordeum vulgare subsp. vulgare cDNA clone HA08P19
3-PRIME, mRNA sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 446 caagaagaagaagaaggcca 427
>gb|BQ657367.1|BQ657367 HA08K08u HA Hordeum vulgare subsp. vulgare cDNA clone HA08K08
3-PRIME, mRNA sequence
Length = 464
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 434 caagaagaagaagaaggcca 415
>gb|BQ659531.1|BQ659531 HE01L13u HE Hordeum vulgare subsp. vulgare cDNA clone HE01L13
3-PRIME, mRNA sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 439 caagaagaagaagaaggcca 420
>gb|BQ660419.1|BQ660419 HI02H05u HI Hordeum vulgare subsp. vulgare cDNA clone HI02H05
3-PRIME, mRNA sequence
Length = 531
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 455 caagaagaagaagaaggcca 436
>gb|BM368107.2|BM368107 EBed01_SQ002_D05_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ002_D05 5', mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagc 441
||||||||||||||||||||
Sbjct: 10 cgcagctcgagaccgtcagc 29
>gb|BM097641.2|BM097641 EBem04_SQ002_E17_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_E17 5', mRNA sequence
Length = 505
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 179 caagaagaagaagaaggcca 198
>gb|BM097856.2|BM097856 EBem04_SQ002_O11_R embryo, 12 DPA, no treatment, cv Optic, EBem04
Hordeum vulgare subsp. vulgare cDNA clone
EBem04_SQ002_O11 5', mRNA sequence
Length = 521
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 164 caagaagaagaagaaggcca 183
>gb|BM376546.2|BM376546 EBem05_SQ002_I14_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_I14 5', mRNA sequence
Length = 516
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagc 441
||||||||||||||||||||
Sbjct: 18 cgcagctcgagaccgtcagc 37
>gb|BM376564.2|BM376564 EBem05_SQ002_J09_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_J09 5', mRNA sequence
Length = 537
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagc 441
||||||||||||||||||||
Sbjct: 32 cgcagctcgagaccgtcagc 51
>gb|BM375463.2|BM375463 EBem06_SQ003_G23_R embryo, 21 DPA, no treatment, cv Optic, EBem06
Hordeum vulgare subsp. vulgare cDNA clone
EBem06_SQ003_G23 5', mRNA sequence
Length = 492
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagc 441
||||||||||||||||||||
Sbjct: 37 cgcagctcgagaccgtcagc 56
>gb|BI780644.2|BI780644 EBes01_SQ001_J19_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ001_J19 5', mRNA sequence
Length = 469
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 168 caagaagaagaagaaggcca 187
>gb|BM099812.2|BM099812 EBes01_SQ004_F15_R embryo sac, 4-6 DPA, no treatment, cv Optic,
EBes01 Hordeum vulgare subsp. vulgare cDNA clone
EBes01_SQ004_F15 5', mRNA sequence
Length = 469
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 174 caagaagaagaagaaggcca 193
>gb|BM100628.2|BM100628 EBma01_SQ005_M10_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_M10 5', mRNA sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 163 caagaagaagaagaaggcca 182
>gb|BM374169.2|BM374169 EBma03_SQ003_N14_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_N14 5', mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 54 caagaagaagaagaaggcca 73
>gb|BI778732.2|BI778732 EBro01_SQ001_E06_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ001_E06 5', mRNA sequence
Length = 609
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 179 caagaagaagaagaaggcca 198
>gb|BQ754551.1|BQ754551 EBed01_SQ003_C02_R endosperm, 6 DPA, no treatment, cv Optic, EBed01
Hordeum vulgare subsp. vulgare cDNA clone
EBed01_SQ003_C02 5', mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagc 441
||||||||||||||||||||
Sbjct: 35 cgcagctcgagaccgtcagc 54
>gb|BQ759749.1|BQ759749 EBpi05_SQ004_D11_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ004_D11 5', mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 165 caagaagaagaagaaggcca 184
>gb|BQ767014.1|BQ767014 EBro08_SQ007_B19_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_B19 5', mRNA sequence
Length = 627
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 672 caagaagaagaagaaggcca 691
||||||||||||||||||||
Sbjct: 168 caagaagaagaagaaggcca 187
>gb|BQ767802.1|BQ767802 EBro08_SQ009_K20_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_K20 5', mRNA sequence
Length = 500
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 422 cgcagctcgagaccgtcagc 441
||||||||||||||||||||
Sbjct: 16 cgcagctcgagaccgtcagc 35
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 189,771
Number of Sequences: 312970
Number of extensions: 189771
Number of successful extensions: 66086
Number of sequences better than 0.5: 108
Number of HSP's better than 0.5 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65760
Number of HSP's gapped (non-prelim): 173
length of query: 753
length of database: 175,134,539
effective HSP length: 19
effective length of query: 734
effective length of database: 169,188,109
effective search space: 124184072006
effective search space used: 124184072006
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)