BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191495.2.1
(1277 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ764220.1|BQ764220 EBan01_SQ005_P04_R anther, yellow st... 127 1e-027
gb|BQ764421.1|BQ764421 EBan01_SQ005_G21_R anther, yellow st... 127 1e-027
gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. v... 127 1e-027
gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow st... 119 2e-025
gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-a... 107 9e-022
gb|BQ753618.1|BQ753618 EBan01_SQ004_M07_R anther, yellow st... 100 2e-019
gb|BQ753440.1|BQ753440 EBan01_SQ004_E11_R anther, yellow st... 80 2e-013
gb|BQ753385.1|BQ753385 EBan01_SQ004_C01_R anther, yellow st... 72 5e-011
gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike... 70 2e-010
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 70 2e-010
gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow st... 70 2e-010
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 70 2e-010
gb|BU981183.1|BU981183 HA22N23r HA Hordeum vulgare subsp. v... 70 2e-010
gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. v... 70 2e-010
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 70 2e-010
gb|CV054086.1|CV054086 BNEL106e9 Barley EST endosperm libra... 70 2e-010
gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm libra... 70 2e-010
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 70 2e-010
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 70 2e-010
gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm libra... 70 2e-010
gb|CV061235.1|CV061235 BNEL66d9 Barley EST endosperm librar... 70 2e-010
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 70 2e-010
gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library... 70 2e-010
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 70 2e-010
gb|BM442598.2|BM442598 EBan01_SQ003_K02_R anther, yellow st... 68 8e-010
gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. v... 60 2e-007
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 54 1e-005
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 54 1e-005
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 54 1e-005
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 54 1e-005
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 54 1e-005
gb|CB884040.1|CB884040 HM11B07r HM Hordeum vulgare subsp. v... 52 5e-005
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 50 2e-004
gb|AL504600.1|AL504600 AL504600 Hordeum vulgare Barke roots... 46 0.003
gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke devel... 46 0.003
gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedl... 46 0.003
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 46 0.003
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 46 0.003
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 46 0.003
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 46 0.003
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 46 0.003
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 46 0.003
gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachi... 46 0.003
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 46 0.003
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 46 0.003
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 46 0.003
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 46 0.003
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 46 0.003
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 46 0.003
gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachi... 46 0.003
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 46 0.003
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 46 0.003
gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 ... 46 0.003
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 46 0.003
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 46 0.003
gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA,... 46 0.003
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 46 0.003
gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. v... 46 0.003
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 46 0.003
gb|CA018998.1|CA018998 HV10G08r HV Hordeum vulgare subsp. v... 46 0.003
gb|CA019031.1|CA019031 HV10I11r HV Hordeum vulgare subsp. v... 46 0.003
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 46 0.003
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 44 0.011
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 44 0.011
gb|BF254343.3|BF254343 HVSMEf0003L07f Hordeum vulgare seedl... 44 0.011
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 44 0.011
gb|BQ765573.1|BQ765573 EBro03_SQ007_F17_R root, 3 week, wat... 44 0.011
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 42 0.044
gb|BQ760850.1|BQ760850 EBro03_SQ003_K11_R root, 3 week, wat... 42 0.044
gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. v... 42 0.044
gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgar... 42 0.044
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 40 0.18
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 40 0.18
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 40 0.18
gb|BM442090.2|BM442090 EBan01_SQ002_C16_R anther, yellow st... 40 0.18
gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA,... 40 0.18
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 40 0.18
gb|CA004554.1|CA004554 HS17P08r HS Hordeum vulgare subsp. v... 40 0.18
gb|CA004842.1|CA004842 HS18N14r HS Hordeum vulgare subsp. v... 40 0.18
gb|CA005550.1|CA005550 HU10A01u HU Hordeum vulgare subsp. v... 40 0.18
gb|CA008132.1|CA008132 HU10A01r HU Hordeum vulgare subsp. v... 40 0.18
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 40 0.18
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 40 0.18
gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. v... 40 0.18
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 40 0.18
gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. v... 40 0.18
gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgar... 40 0.18
>gb|BQ764220.1|BQ764220 EBan01_SQ005_P04_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_P04 5', mRNA sequence
Length = 470
Score = 127 bits (64), Expect = 1e-027
Identities = 247/308 (80%)
Strand = Plus / Plus
Query: 196 cgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggt 255
|||| ||||| |||||||||||||| ||||| ||| | |||||||| |||| ||||||||
Sbjct: 159 cgacgtggtacggcaagccgacgggcgccgggcccaaggacaacggcggcgcctgcgggt 218
Query: 256 acaaggacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatct 315
||||||| ||| ||||| |||||||| ||||| | | ||||||||| |||||||||
Sbjct: 219 acaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtccccatct 278
Query: 316 tcaaggatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagt 375
||||||| || | || || || |||||||||||| |||||||| ||||| | || |
Sbjct: 279 tcaaggacggccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccgaggcct 338
Query: 376 gctccggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgt 435
|||||||| ||||| | || |||||| |||| |||| | ||||| ||||||||||
Sbjct: 339 gctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcggcgt 398
Query: 436 accacttcgatttagcaggcacggcgttcggcgccatggccaagaagggcgaggaggaga 495
|||||||||| | | ||| || |||||| ||||||||||||||||| ||||| |||
Sbjct: 399 accacttcgacctgtccggccatgccttcggcaccatggccaagaagggccaggagcaga 458
Query: 496 agctgcgc 503
||||||||
Sbjct: 459 agctgcgc 466
>gb|BQ764421.1|BQ764421 EBan01_SQ005_G21_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ005_G21 5', mRNA sequence
Length = 538
Score = 127 bits (64), Expect = 1e-027
Identities = 247/308 (80%)
Strand = Plus / Plus
Query: 196 cgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggt 255
|||| ||||| |||||||||||||| ||||| ||| | |||||||| |||| ||||||||
Sbjct: 99 cgacgtggtacggcaagccgacgggcgccgggcccaaggacaacggcggcgcctgcgggt 158
Query: 256 acaaggacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatct 315
||||||| ||| ||||| |||||||| ||||| | | ||||||||| |||||||||
Sbjct: 159 acaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtccccatct 218
Query: 316 tcaaggatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagt 375
||||||| || | || || || |||||||||||| |||||||| ||||| | || |
Sbjct: 219 tcaaggacggccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccgaggcct 278
Query: 376 gctccggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgt 435
|||||||| ||||| | || |||||| |||| |||| | ||||| ||||||||||
Sbjct: 279 gctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcggcgt 338
Query: 436 accacttcgatttagcaggcacggcgttcggcgccatggccaagaagggcgaggaggaga 495
|||||||||| | | ||| || |||||| ||||||||||||||||| ||||| |||
Sbjct: 339 accacttcgacctgtccggccatgccttcggcaccatggccaagaagggccaggagcaga 398
Query: 496 agctgcgc 503
||||||||
Sbjct: 399 agctgcgc 406
>gb|BU995044.1|BU995044 HM09A07r HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
5-PRIME, mRNA sequence
Length = 628
Score = 127 bits (64), Expect = 1e-027
Identities = 247/308 (80%)
Strand = Plus / Plus
Query: 196 cgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggt 255
|||| ||||| |||||||||||||| ||||| ||| | |||||||| |||| ||||||||
Sbjct: 155 cgacgtggtacggcaagccgacgggcgccgggcccaaggacaacggcggcgcctgcgggt 214
Query: 256 acaaggacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatct 315
||||||| ||| ||||| |||||||| ||||| | | ||||||||| |||||||||
Sbjct: 215 acaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtccccatct 274
Query: 316 tcaaggatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagt 375
||||||| || | || || || |||||||||||| |||||||| ||||| | || |
Sbjct: 275 tcaaggacggccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccgaggcct 334
Query: 376 gctccggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgt 435
|||||||| ||||| | || |||||| |||| |||| | ||||| ||||||||||
Sbjct: 335 gctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcggcgt 394
Query: 436 accacttcgatttagcaggcacggcgttcggcgccatggccaagaagggcgaggaggaga 495
|||||||||| | | ||| || |||||| ||||||||||||||||| ||||| |||
Sbjct: 395 accacttcgacctgtccggccatgccttcggcaccatggccaagaagggccaggagcaga 454
Query: 496 agctgcgc 503
||||||||
Sbjct: 455 agctgcgc 462
>gb|BQ753409.1|BQ753409 EBan01_SQ004_D03_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_D03 5', mRNA sequence
Length = 677
Score = 119 bits (60), Expect = 2e-025
Identities = 246/308 (79%)
Strand = Plus / Plus
Query: 196 cgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggt 255
|||| ||||| |||||||||||||| ||||| ||| | |||||||| |||| ||||||||
Sbjct: 159 cgacgtggtacggcaagccgacgggcgccgggcccaaggacaacggcggcgcctgcgggt 218
Query: 256 acaaggacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatct 315
||||||| ||| ||||| |||||||| ||||| | | ||||||||| |||||||||
Sbjct: 219 acaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtccccatct 278
Query: 316 tcaaggatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagt 375
||||||| | | || || || |||||||||||| |||||||| ||||| | || |
Sbjct: 279 tcaaggacagccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccggggcct 338
Query: 376 gctccggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgt 435
|||||||| ||||| | || |||||| |||| |||| | ||||| ||||||||||
Sbjct: 339 gctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcggcgt 398
Query: 436 accacttcgatttagcaggcacggcgttcggcgccatggccaagaagggcgaggaggaga 495
|||||||||| | | ||| || |||||| ||||||||||||||||| ||||| |||
Sbjct: 399 accacttcgacctgtccggccatgccttcggcaccatggccaagaagggccaggagcaga 458
Query: 496 agctgcgc 503
||||||||
Sbjct: 459 agctgcgc 466
>gb|BE230894.2|BE230894 HVSMEg0001I02f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0001I02f, mRNA sequence
Length = 606
Score = 107 bits (54), Expect = 9e-022
Identities = 201/250 (80%)
Strand = Plus / Plus
Query: 196 cgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggt 255
|||| ||||| |||||||||||||| ||||||||| | |||||||| |||| ||||||||
Sbjct: 134 cgacgtggtacggcaagccgacgggcgccggtcccaaggacaacggcggcgcctgcgggt 193
Query: 256 acaaggacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatct 315
||||||| ||| ||||| |||||||| ||||| | | ||||||||| |||||||||
Sbjct: 194 acaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtccccatct 253
Query: 316 tcaaggatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagt 375
|||| || || | || || || |||||||||||| |||||||| ||||| | || |
Sbjct: 254 tcaaagacggccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccgaggcct 313
Query: 376 gctccggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgt 435
|||||||| ||||| | || |||||| |||| |||| | ||||| ||||||||||
Sbjct: 314 gctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcggcgt 373
Query: 436 accacttcga 445
||||||||||
Sbjct: 374 accacttcga 383
>gb|BQ753618.1|BQ753618 EBan01_SQ004_M07_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_M07 5', mRNA sequence
Length = 448
Score = 99.6 bits (50), Expect = 2e-019
Identities = 200/250 (80%)
Strand = Plus / Plus
Query: 196 cgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggt 255
|||| ||||| |||||||||||||| ||||| ||| | |||||||| |||| ||||||||
Sbjct: 165 cgacgtggtacggcaagccgacgggcgccgggcccaaggacaacggcggcgcctgcgggt 224
Query: 256 acaaggacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatct 315
||||||| ||| ||||| |||||||| ||||| | | ||||||||| |||||||||
Sbjct: 225 acaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtccccatct 284
Query: 316 tcaaggatggtctgggttgtgggtcctgcttcgagatcaagtgcgataagcctgtggagt 375
||||||| | | || || || |||||||||||| |||||||| ||||| | || |
Sbjct: 285 tcaaggacagccgcggctgcggctcctgcttcgagctcaagtgcaccaagcccgaggcct 344
Query: 376 gctccggcaagcccgtggtggtgcacatcacggacatgaactatgagcctatcgcggcgt 435
|||||||| ||||| | || |||||| |||| |||| | ||||| ||||||||||
Sbjct: 345 gctccggcgagcccaccatcgtcaccatcaccgacaagaacgaggagcccatcgcggcgt 404
Query: 436 accacttcga 445
||||||||||
Sbjct: 405 accacttcga 414
>gb|BQ753440.1|BQ753440 EBan01_SQ004_E11_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_E11 5', mRNA sequence
Length = 404
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/124 (83%)
Strand = Plus / Plus
Query: 196 cgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggt 255
|||| ||||| ||||||||||| || ||||| ||| | |||||||| |||| ||||||||
Sbjct: 159 cgacgtggtacggcaagccgacaggcgccgggcccaaagacaacggcggcgcctgcgggt 218
Query: 256 acaaggacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatct 315
||||||| ||| ||||| |||||||| ||||| | | ||||||||| |||||||||
Sbjct: 219 acaaggaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtccccatct 278
Query: 316 tcaa 319
||||
Sbjct: 279 tcaa 282
Score = 42.1 bits (21), Expect = 0.044
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccact 441
|||||| |||| |||| | ||||| ||||||||||||||||
Sbjct: 364 catcaccgacaagaacgaagagcccatcgcggcgtaccact 404
>gb|BQ753385.1|BQ753385 EBan01_SQ004_C01_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ004_C01 5', mRNA sequence
Length = 396
Score = 71.9 bits (36), Expect = 5e-011
Identities = 102/124 (82%)
Strand = Plus / Plus
Query: 196 cgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggt 255
|||| ||||| ||||||||||| || ||||| ||| | |||||||| |||| ||||||||
Sbjct: 159 cgacgtggtacggcaagccgactggcgccgggcccaaggacaacggcggcgcctgcgggt 218
Query: 256 acaaggacgtgaacaagccccccttcaatagcatgggcgcatgcggcaacatccccatct 315
|||| || ||| ||||| |||||||| ||||| | | ||||||||| |||||||||
Sbjct: 219 acaaagaggtggacaaggcccccttcttcggcatgacctcctgcggcaacgtccccatct 278
Query: 316 tcaa 319
||||
Sbjct: 279 tcaa 282
>gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0013G22f, mRNA sequence
Length = 488
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 79 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccggacgacaa 138
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 139 cggcggcgcgtgcgggttcaagaacgt 165
>gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. vulgare cDNA clone HA05E07
5-PRIME, mRNA sequence
Length = 504
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 10 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 69
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 70 cggcggcgcgtgcgggttcaagaacgt 96
>gb|BM442635.2|BM442635 EBan01_SQ003_L19_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_L19 5', mRNA sequence
Length = 411
Score = 69.9 bits (35), Expect = 2e-010
Identities = 86/103 (83%)
Strand = Plus / Plus
Query: 401 catcacggacatgaactatgagcctatcgcggcgtaccacttcgatttagcaggcacggc 460
|||||| |||| |||| | ||||| |||||||||||||||||||| | | ||| ||
Sbjct: 68 catcaccgacaagaacgaggagcccatcgcggcgtaccacttcgacctgtccggccatgc 127
Query: 461 gttcggcgccatggccaagaagggcgaggaggagaagctgcgc 503
|||||| ||||||||||||||||| ||||| |||||||||||
Sbjct: 128 cttcggcaccatggccaagaagggccaggagcagaagctgcgc 170
Score = 40.1 bits (20), Expect = 0.18
Identities = 83/104 (79%)
Strand = Plus / Plus
Query: 556 ccaaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtca 615
||||||| | ||||||| | || ||||| | | ||||||||||||| || ||| || |||
Sbjct: 229 ccaaggtgaacttccacgtggagaagggctccagccccaactacctcgccctggtgatca 288
Query: 616 agtacgtcgacggcgacggtgacattgtggcagtggacgtcaag 659
||| | || | |||||||| ||| | ||||| |||||| |||||
Sbjct: 289 agttcctccagggcgacggcgacgtggtggccgtggacatcaag 332
>gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. vulgare cDNA clone HA22I03
5-PRIME, mRNA sequence
Length = 597
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 72 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 131
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 132 cggcggcgcgtgcgggttcaagaacgt 158
>gb|BU981183.1|BU981183 HA22N23r HA Hordeum vulgare subsp. vulgare cDNA clone HA22N23
5-PRIME, mRNA sequence
Length = 465
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 111 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 170
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 171 cggcggcgcgtgcgggttcaagaacgt 197
>gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. vulgare cDNA clone HA24I17
5-PRIME, mRNA sequence
Length = 495
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 117 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 176
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 177 cggcggcgcgtgcgggttcaagaacgt 203
>gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL105f8 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 702
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 119 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 178
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 179 cggcggcgcgtgcgggttcaagaacgt 205
>gb|CV054086.1|CV054086 BNEL106e9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL106e9 5' similar to Triticum
aestivum expansin EXPB7 mRNA, complete cds, mRNA
sequence
Length = 718
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 125 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 184
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 185 cggcggcgcgtgcgggttcaagaacgt 211
>gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL10B12 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 533
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 119 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 178
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 179 cggcggcgcgtgcgggttcaagaacgt 205
>gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL5B4 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 634
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 119 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 178
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 179 cggcggcgcgtgcgggttcaagaacgt 205
>gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL63c5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 634
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 61 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 120
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 121 cggcggcgcgtgcgggttcaagaacgt 147
>gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL66d10 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 539
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 117 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 176
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 177 cggcggcgcgtgcgggttcaagaacgt 203
>gb|CV061235.1|CV061235 BNEL66d9 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL66d9 5' similar to Triticum
aestivum expansin EXPB7 mRNA, complete cds, mRNA
sequence
Length = 551
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 119 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 178
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 179 cggcggcgcgtgcgggttcaagaacgt 205
>gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL87h3 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 701
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 125 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 184
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 185 cggcggcgcgtgcgggttcaagaacgt 211
>gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library Hordeum vulgare subsp. vulgare
cDNA clone BNEL8E2 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 546
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 117 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 176
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 177 cggcggcgcgtgcgggttcaagaacgt 203
>gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL94h5 5' similar to Oryza sativa
beta-expansin, mRNA sequence
Length = 661
Score = 69.9 bits (35), Expect = 2e-010
Identities = 74/87 (85%)
Strand = Plus / Plus
Query: 179 ctggctggacgctaaagcgacatggtatggcaagccgacgggtgccggtcccgacgacaa 238
|||||| ||||| || |||||||||||||||| ||||| |||||||| || ||||||||
Sbjct: 117 ctggctcgacgccaaggcgacatggtatggcagaccgaccggtgccgggccagacgacaa 176
Query: 239 cggtggcggctgcgggtacaaggacgt 265
||| |||| ||||||| |||| ||||
Sbjct: 177 cggcggcgcgtgcgggttcaagaacgt 203
>gb|BM442598.2|BM442598 EBan01_SQ003_K02_R anther, yellow stage, no treatment, cv Optic,
EBan01 Hordeum vulgare subsp. vulgare cDNA clone
EBan01_SQ003_K02 5', mRNA sequence
Length = 250
Score = 67.9 bits (34), Expect = 8e-010
Identities = 73/86 (84%)
Strand = Plus / Plus
Query: 196 cgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgggt 255
|||| ||||| ||||||||||| || ||||| ||| | |||||||| |||| ||||||||
Sbjct: 165 cgacgtggtacggcaagccgacaggcgccgggcccaaagacaacggcggcgcctgcgggt 224
Query: 256 acaaggacgtgaacaagccccccttc 281
||||||| ||| |||| ||||||||
Sbjct: 225 acaaggaagtggacaacgcccccttc 250
>gb|CB881182.1|CB881182 HM09A07w HM Hordeum vulgare subsp. vulgare cDNA clone HM09A07
3-PRIME, mRNA sequence
Length = 680
Score = 60.0 bits (30), Expect = 2e-007
Identities = 66/78 (84%)
Strand = Plus / Minus
Query: 426 atcgcggcgtaccacttcgatttagcaggcacggcgttcggcgccatggccaagaagggc 485
|||||||||||||||||||| | | ||| || |||||| |||||||||||||||||
Sbjct: 678 atcgcggcgtaccacttcgacctgtccggccatgccttcggcaccatggccaagaagggc 619
Query: 486 gaggaggagaagctgcgc 503
||||| |||||||||||
Sbjct: 618 caggagcagaagctgcgc 601
Score = 40.1 bits (20), Expect = 0.18
Identities = 83/104 (79%)
Strand = Plus / Minus
Query: 556 ccaaggtcaccttccaccttgaaaaggggtgcggccccaactacctggcgctgctggtca 615
||||||| | ||||||| | || ||||| | | ||||||||||||| || ||| | ||||
Sbjct: 542 ccaaggtgaacttccacgtggagaagggctccagccccaactacctcgccctggttgtca 483
Query: 616 agtacgtcgacggcgacggtgacattgtggcagtggacgtcaag 659
||| | || | |||||||| ||| | ||||| |||||| |||||
Sbjct: 482 agttcctccagggcgacggcgacgtggtggccgtggacatcaag 439
>gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. vulgare cDNA clone HM01F21
5-PRIME, mRNA sequence
Length = 650
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
|||||||||||||||||||||||||| || ||| || || ||||||| |||| |||||
Sbjct: 284 tgcggcaacatccccatcttcaaggacggcaagggatgcggctcctgctacgaggtcaag 343
Query: 357 tgc 359
|||
Sbjct: 344 tgc 346
>gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. vulgare cDNA clone HM03I08
5-PRIME, mRNA sequence
Length = 616
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
|||||||||||||||||||||||||| || ||| || || ||||||| |||| |||||
Sbjct: 294 tgcggcaacatccccatcttcaaggacggcaagggatgcggctcctgctacgaggtcaag 353
Query: 357 tgc 359
|||
Sbjct: 354 tgc 356
>gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. vulgare cDNA clone HM06N05
5-PRIME, mRNA sequence
Length = 616
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
|||||||||||||||||||||||||| || ||| || || ||||||| |||| |||||
Sbjct: 263 tgcggcaacatccccatcttcaaggacggcaagggatgcggctcctgctacgaggtcaag 322
Query: 357 tgc 359
|||
Sbjct: 323 tgc 325
>gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. vulgare cDNA clone HM10H05
5-PRIME, mRNA sequence
Length = 539
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
|||||||||||||||||||||||||| || ||| || || ||||||| |||| |||||
Sbjct: 263 tgcggcaacatccccatcttcaaggacggcaagggatgcggctcctgctacgaggtcaag 322
Query: 357 tgc 359
|||
Sbjct: 323 tgc 325
>gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. vulgare cDNA clone HM12C11
5-PRIME, mRNA sequence
Length = 539
Score = 54.0 bits (27), Expect = 1e-005
Identities = 54/63 (85%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaaggatggtctgggttgtgggtcctgcttcgagatcaag 356
|||||||||||||||||||||||||| || ||| || || ||||||| |||| |||||
Sbjct: 263 tgcggcaacatccccatcttcaaggacggcaagggatgcggctcctgctacgaggtcaag 322
Query: 357 tgc 359
|||
Sbjct: 323 tgc 325
>gb|CB884040.1|CB884040 HM11B07r HM Hordeum vulgare subsp. vulgare cDNA clone HM11B07
5-PRIME, mRNA sequence
Length = 377
Score = 52.0 bits (26), Expect = 5e-005
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 297 tgcggcaacatccccatcttcaagga 322
||||||||||||||||||||||||||
Sbjct: 266 tgcggcaacatccccatcttcaagga 291
>gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002I16f, mRNA sequence
Length = 851
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 510 ggcatcatcgacatgcagttccgaagggt 538
||||||||||||||||||||| |||||||
Sbjct: 374 ggcatcatcgacatgcagttcagaagggt 402
Score = 40.1 bits (20), Expect = 0.18
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 222 gccggtcccgacgacaacggtggcggctgcgggtacaaggacgt 265
||||| || ||||||||||| |||| |||||||| |||| ||||
Sbjct: 80 gccgggccagacgacaacggcggcgcctgcgggttcaagaacgt 123
>gb|AL504600.1|AL504600 AL504600 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05M13V 5', mRNA sequence
Length = 700
Score = 46.1 bits (23), Expect = 0.003
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 223 ccggtcccgacgacaacggtggcggctgcgggtacaaggacgtgaac 269
|||||||||||||||||||||| | ||||| | |||| ||||||||
Sbjct: 256 ccggtcccgacgacaacggtggtgcttgcggcttcaagaacgtgaac 302
Score = 42.1 bits (21), Expect = 0.044
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 510 ggcatcatcgacatgcagttc 530
|||||||||||||||||||||
Sbjct: 549 ggcatcatcgacatgcagttc 569
>gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01J07V 5',
mRNA sequence
Length = 549
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 424 ggcaccgcgttcggcgccatggccaag 450
>gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016K12f, mRNA sequence
Length = 787
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 195 gcgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgg 253
||||| ||||||||| |||| | || ||||| ||||||||||||||||| | ||||||
Sbjct: 215 gcgacctggtatggccagcccaatggcgccggccccgacgacaacggtggtgcctgcgg 273
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 340 ggcaccgcgttcggcgccatggccaag 366
>gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0007P24f, mRNA sequence
Length = 844
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 466 ggcaccgcgttcggcgccatggccaag 492
>gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010D14f, mRNA sequence
Length = 628
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 195 gcgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgg 253
||||| ||||||||| |||| | || ||||| ||||||||||||||||| | ||||||
Sbjct: 229 gcgacctggtatggccagcccaatggcgccggccccgacgacaacggtggtgcctgcgg 287
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F11f, mRNA sequence
Length = 630
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 415 ggcaccgcgttcggcgccatggccaag 441
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 453 ggcaccgcgttcggcgccatggccaag 479
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 357 ggcaccgcgttcggcgccatggccaag 383
>gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E09f, mRNA sequence
Length = 699
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 195 gcgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgg 253
||||| ||||||||| |||| | || ||||| ||||||||||||||||| | ||||||
Sbjct: 227 gcgacctggtatggccagcccaatggcgccggccccgacgacaacggtggtgcctgcgg 285
>gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F12f, mRNA sequence
Length = 669
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 467 ggcaccgcgttcggcgccatggccaag 493
>gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019H04f, mRNA sequence
Length = 663
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 465 ggcaccgcgttcggcgccatggccaag 491
>gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020K03f, mRNA sequence
Length = 679
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 461 ggcaccgcgttcggcgccatggccaag 487
>gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020N13f, mRNA sequence
Length = 630
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 462 ggcaccgcgttcggcgccatggccaag 488
>gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020P05f, mRNA sequence
Length = 615
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 456 ggcaccgcgttcggcgccatggccaag 482
>gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021G03f, mRNA sequence
Length = 682
Score = 46.1 bits (23), Expect = 0.003
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 453 ggcacggcgttcggcgccatggccaag 479
||||| |||||||||||||||||||||
Sbjct: 444 ggcaccgcgttcggcgccatggccaag 470
>gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023C15f, mRNA sequence
Length = 646
Score = 46.1 bits (23), Expect = 0.003
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 195 gcgacatggtatggcaagccgacgggtgccggtcccgacgacaacggtggcggctgcgg 253
||||| ||||||||| |||| | || ||||| ||||||||||||||||| | ||||||
Sbjct: 227 gcgacctggtatggccagcccaatggcgccggccccgacgacaacggtggtgcctgcgg 285
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 164,862
Number of Sequences: 312970
Number of extensions: 164862
Number of successful extensions: 47058
Number of sequences better than 0.5: 87
Number of HSP's better than 0.5 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46667
Number of HSP's gapped (non-prelim): 387
length of query: 1277
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1258
effective length of database: 169,188,109
effective search space: 212838641122
effective search space used: 212838641122
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)