BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3147935.2.1
(711 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BG414212.2|BG414212 HVSMEk0001C19f Hordeum vulgare testa... 40 0.097
>gb|BG414212.2|BG414212 HVSMEk0001C19f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0001C19f, mRNA sequence
Length = 473
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 207 attttgttcttccttttttg 226
||||||||||||||||||||
Sbjct: 373 attttgttcttccttttttg 392
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 49,131
Number of Sequences: 312970
Number of extensions: 49131
Number of successful extensions: 13911
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13910
Number of HSP's gapped (non-prelim): 1
length of query: 711
length of database: 175,134,539
effective HSP length: 19
effective length of query: 692
effective length of database: 169,188,109
effective search space: 117078171428
effective search space used: 117078171428
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)