BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3115097.2.2
(1086 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachi... 76 3e-012
gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA li... 76 3e-012
gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA li... 76 3e-012
gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. v... 76 3e-012
gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. v... 76 3e-012
gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. v... 76 3e-012
gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedl... 70 2e-010
gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA li... 68 7e-010
gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. v... 68 7e-010
gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DA... 60 2e-007
gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, dro... 60 2e-007
gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedl... 54 1e-005
gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, dro... 54 1e-005
gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. v... 54 1e-005
gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA li... 50 2e-004
gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedl... 48 6e-004
gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green... 48 6e-004
gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedl... 48 6e-004
gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. v... 48 6e-004
gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. v... 48 6e-004
gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DA... 46 0.002
gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hyd... 46 0.002
gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachi... 44 0.010
gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, wat... 44 0.010
gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots... 42 0.038
gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedl... 42 0.038
gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedl... 42 0.038
gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedl... 42 0.038
gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike... 42 0.038
gb|BI950803.1|BI950803 HVSMEl0023D24f Hordeum vulgare spike... 42 0.038
gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachi... 42 0.038
gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachi... 42 0.038
gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachi... 42 0.038
gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedl... 42 0.038
gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachi... 42 0.038
gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachi... 42 0.038
gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachi... 42 0.038
gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachi... 42 0.038
gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedl... 42 0.038
gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedl... 42 0.038
gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA li... 42 0.038
gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA li... 42 0.038
gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA li... 42 0.038
gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. v... 42 0.038
gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. v... 42 0.038
gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, dro... 42 0.038
gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. v... 42 0.038
gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. v... 42 0.038
gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. v... 42 0.038
gb|CA018512.1|CA018512 HV08N14r HV Hordeum vulgare subsp. v... 42 0.038
gb|CA023510.1|CA023510 HZ46H12r HZ Hordeum vulgare subsp. v... 42 0.038
gb|BI951147.1|BI951147 HVSMEl0024K11f Hordeum vulgare spike... 40 0.15
gb|BE216443.3|BE216443 HV_CEb0010I04f Hordeum vulgare seedl... 40 0.15
gb|BM816530.1|BM816530 HC105H06_T3.ab1 HC Hordeum vulgare s... 40 0.15
gb|BM816531.1|BM816531 HC110H09_T3.ab1 HC Hordeum vulgare s... 40 0.15
gb|BM816532.1|BM816532 HC105H05_T3.ab1 HC Hordeum vulgare s... 40 0.15
gb|BM816533.1|BM816533 HC105F06_T3.ab1 HC Hordeum vulgare s... 40 0.15
gb|BM816534.1|BM816534 HC109E06_T3.ab1 HC Hordeum vulgare s... 40 0.15
gb|BM816535.1|BM816535 HC105H02_T3.ab1 HC Hordeum vulgare s... 40 0.15
gb|BM816536.1|BM816536 HC114C11_SK.ab1 HC Hordeum vulgare s... 40 0.15
gb|BM816537.1|BM816537 HC108A03_SK.ab1 HC Hordeum vulgare s... 40 0.15
gb|BM817360.1|BM817360 HC106B05_T3.ab1 HC Hordeum vulgare s... 40 0.15
>gb|BI957345.1|BI957345 HVSMEn0009B08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009B08f, mRNA sequence
Length = 651
Score = 75.8 bits (38), Expect = 3e-012
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccgg 584
|||||||| || ||| ||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct: 237 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 296
Query: 585 tacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgcc 644
| ||| |||| || || |||||||||| ||||| | |||||||||| || ||| ||
Sbjct: 297 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggcccc 356
Query: 645 ggcgac 650
||||||
Sbjct: 357 ggcgac 362
>gb|AV913816.1|AV913816 AV913816 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags23g08 5', mRNA sequence
Length = 657
Score = 75.8 bits (38), Expect = 3e-012
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccgg 584
|||||||| || ||| ||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct: 26 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 85
Query: 585 tacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgcc 644
| ||| |||| || || |||||||||| ||||| | |||||||||| || ||| ||
Sbjct: 86 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggcccc 145
Query: 645 ggcgac 650
||||||
Sbjct: 146 ggcgac 151
>gb|BJ464959.1|BJ464959 BJ464959 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags36l22 5', mRNA sequence
Length = 639
Score = 75.8 bits (38), Expect = 3e-012
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccgg 584
|||||||| || ||| ||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct: 26 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 85
Query: 585 tacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgcc 644
| ||| |||| || || |||||||||| ||||| | |||||||||| || ||| ||
Sbjct: 86 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggcccc 145
Query: 645 ggcgac 650
||||||
Sbjct: 146 ggcgac 151
>gb|CA024803.1|CA024803 HZ50F17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F17
5-PRIME, mRNA sequence
Length = 519
Score = 75.8 bits (38), Expect = 3e-012
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccgg 584
|||||||| || ||| ||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct: 254 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 313
Query: 585 tacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgcc 644
| ||| |||| || || |||||||||| ||||| | |||||||||| || ||| ||
Sbjct: 314 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggcccc 373
Query: 645 ggcgac 650
||||||
Sbjct: 374 ggcgac 379
>gb|CA025602.1|CA025602 HZ52K01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52K01
5-PRIME, mRNA sequence
Length = 418
Score = 75.8 bits (38), Expect = 3e-012
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccgg 584
|||||||| || ||| ||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct: 131 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 190
Query: 585 tacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgcc 644
| ||| |||| || || |||||||||| ||||| | |||||||||| || ||| ||
Sbjct: 191 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggcccc 250
Query: 645 ggcgac 650
||||||
Sbjct: 251 ggcgac 256
>gb|CA031352.1|CA031352 HX09L09r HX Hordeum vulgare subsp. vulgare cDNA clone HX09L09
5-PRIME, mRNA sequence
Length = 631
Score = 75.8 bits (38), Expect = 3e-012
Identities = 104/126 (82%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccgg 584
|||||||| || ||| ||||||||||||||||||||||| |||| ||||||||||| ||
Sbjct: 258 gccggcattgtccccgtctcctaccgcagggtggcgtgccagaagaagggcggcatcagg 317
Query: 585 tacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgcc 644
| ||| |||| || || |||||||||| ||||| | |||||||||| || ||| ||
Sbjct: 318 ttcacgatcaatggccactcgtacttcaacctggtgctggtcaccaacgtgggtggcccc 377
Query: 645 ggcgac 650
||||||
Sbjct: 378 ggcgac 383
>gb|BF621546.3|BF621546 HVSMEa0011F20f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0011F20f, mRNA sequence
Length = 825
Score = 69.9 bits (35), Expect = 2e-010
Identities = 103/126 (81%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccgg 584
||||||||||| ||| |||||||| | |||||| ||||| |||| |||| |||||||||
Sbjct: 522 gccggcatcgtacccgtctcctacagaagggtgccgtgcgtgaagaaggggggcatccgg 581
Query: 585 tacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgcc 644
| |||||||| ||| || ||||||||| ||||| | | |||||||| | |||||||
Sbjct: 582 ttcaccatcaacggccactcctacttcaacctggtgctggtgaccaacgtggncggcgcc 641
Query: 645 ggcgac 650
||||||
Sbjct: 642 ggcgac 647
Score = 48.1 bits (24), Expect = 6e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct: 298 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgcg 357
>gb|AV917412.1|AV917412 AV917412 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 5', mRNA sequence
Length = 626
Score = 67.9 bits (34), Expect = 7e-010
Identities = 103/126 (81%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccgg 584
||||||||||| ||| |||||||| | |||||| ||||| |||| |||| |||||||||
Sbjct: 41 gccggcatcgtacccgtctcctacagaagggtgccgtgcgtgaagaaggggggcatccgg 100
Query: 585 tacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgcc 644
| |||||||| ||| || ||||||||| ||||| | | |||||||| | |||||||
Sbjct: 101 ttcaccatcaacggccactcctacttcaacctggtgctggtgaccaacgtggccggcgcc 160
Query: 645 ggcgac 650
||||||
Sbjct: 161 ggcgac 166
>gb|CA001705.1|CA001705 HS05F12r HS Hordeum vulgare subsp. vulgare cDNA clone HS05F12
5-PRIME, mRNA sequence
Length = 520
Score = 67.9 bits (34), Expect = 7e-010
Identities = 103/126 (81%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccgg 584
||||||||||| ||| |||||||| | |||||| ||||| |||| |||| |||||||||
Sbjct: 304 gccggcatcgtacccgtctcctacagaagggtgccgtgcgtgaagaaggggggcatccgg 363
Query: 585 tacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgcc 644
| |||||||| ||| || ||||||||| ||||| | | |||||||| | |||||||
Sbjct: 364 ttcaccatcaacggccactcctacttcaacctggtgctggtgaccaacgtggccggcgcc 423
Query: 645 ggcgac 650
||||||
Sbjct: 424 ggcgac 429
Score = 48.1 bits (24), Expect = 6e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct: 80 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgcg 139
>gb|BG368613.1|BG368613 HVSMEi0019P07f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0019P07f, mRNA sequence
Length = 619
Score = 60.0 bits (30), Expect = 2e-007
Identities = 102/126 (80%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccgg 584
||||||||||| ||| | |||||| | |||||| ||||| |||| |||| |||||||||
Sbjct: 67 gccggcatcgtacccgtttcctacagaagggtgccgtgcgtgaagaaggggggcatccgg 126
Query: 585 tacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgtaggcggcgcc 644
| |||||||| ||| || ||||||||| ||||| | | |||||||| | |||||||
Sbjct: 127 ttcaccatcaacggccactcctacttcaacctggtgctggtgaccaacgtggccggcgcc 186
Query: 645 ggcgac 650
||||||
Sbjct: 187 ggcgac 192
>gb|BQ766938.1|BQ766938 EBro08_SQ007_D18_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ007_D18 5', mRNA sequence
Length = 629
Score = 60.0 bits (30), Expect = 2e-007
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 444 gacagcggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||| |||||| |||||||||||||||||| |||||||||||
Sbjct: 372 gacaacggcggatggtgcaacccgccgcggcagcacttcgac 413
>gb|BF622346.3|BF622346 HVSMEa0002O08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0002O08f, mRNA sequence
Length = 844
Score = 54.0 bits (27), Expect = 1e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 524 ggccggcatcgtgcccatctcctaccgcagggtggcgtgcacgaagcagggcggcatccg 583
|||||||||||| ||| |||||||| | |||||| ||||| |||| | || ||||||||
Sbjct: 521 ggccggcatcgtacccctctcctacagaagggtgccgtgcgtgaagaaagggggcatccg 580
Query: 584 gtacaccatca 594
|| ||||||||
Sbjct: 581 gttcaccatca 591
Score = 48.1 bits (24), Expect = 6e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct: 298 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgcg 357
>gb|BQ766646.1|BQ766646 EBro08_SQ006_P15_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ006_P15 5', mRNA sequence
Length = 454
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 576 ggcatccggtacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgta 635
|||||||||| |||||||||||| || ||||||||| ||||| |||||||||||
Sbjct: 190 ggcatccggttcaccatcaccggccactcctacttcaacctggtgctcatcaccaacgtt 249
Query: 636 ggcggcgccggcgac 650
| |||||||||||||
Sbjct: 250 gccggcgccggcgac 264
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctc 488
||||||||||||||||||||||| | ||| |||||||||
Sbjct: 63 cggcgggtggtgcaacccgccgcagtcgcatttcgacctc 102
>gb|BU990530.1|BU990530 HF25F05r HF Hordeum vulgare subsp. vulgare cDNA clone HF25F05
5-PRIME, mRNA sequence
Length = 515
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/75 (84%)
Strand = Plus / Plus
Query: 576 ggcatccggtacaccatcaccgggaacaagtacttcaacatggtgacgatcaccaacgta 635
|||||||||| |||||||||||| || ||||||||| ||||| |||||||||||
Sbjct: 142 ggcatccggttcaccatcaccggccactcctacttcaacctggtgctcatcaccaacgtt 201
Query: 636 ggcggcgccggcgac 650
| |||||||||||||
Sbjct: 202 gccggcgccggcgac 216
Score = 48.1 bits (24), Expect = 6e-004
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgacctc 488
||||||||||||||||||||||| | ||| |||||||||
Sbjct: 15 cggcgggtggtgcaacccgccgcagtcgcatttcgacctc 54
>gb|AV916436.1|AV916436 AV916436 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags17d09 5', mRNA sequence
Length = 536
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Plus
Query: 550 gcagggtggcgtgcacgaagcagggcggcatccggtacaccatcaccgggaacaagtact 609
|||||||| ||||| |||| |||| |||||||||| |||||||| ||| || ||||
Sbjct: 255 gcagggtgccgtgcgtgaagaaggggggcatccggttcaccatcaacggccactcctact 314
Query: 610 tcaacatggtgacgatcaccaacgtaggcggcgccggcgac 650
||||| ||||| | | |||||||| | |||||||||||||
Sbjct: 315 tcaacctggtgctggtgaccaacgtggccggcgccggcgac 355
>gb|BF256452.2|BF256452 HVSMEf0010A02f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010A02f, mRNA sequence
Length = 839
Score = 48.1 bits (24), Expect = 6e-004
Identities = 45/52 (86%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggt 346
||||||||| |||||||| |||||| ||||||||||| |||||||||||
Sbjct: 89 tgagcacggcgctgttcgagcgcggcgccgcctgcggcggctgctacgaggt 140
>gb|BI953531.1|BI953531 HVSMEm0013B19f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0013B19f, mRNA sequence
Length = 626
Score = 48.1 bits (24), Expect = 6e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct: 22 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgcg 81
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcg 472
|||||| |||||||||||||||||
Sbjct: 170 cggcggctggtgcaacccgccgcg 193
>gb|BF619242.3|BF619242 HVSMEc0015J01f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0015J01f, mRNA sequence
Length = 563
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcg 472
||||||||||||||||||||||||
Sbjct: 446 cggcgggtggtgcaacccgccgcg 469
Score = 48.1 bits (24), Expect = 6e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct: 298 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgcg 357
>gb|CA017256.1|CA017256 HV14F10u HV Hordeum vulgare subsp. vulgare cDNA clone HV14F10
3-PRIME, mRNA sequence
Length = 532
Score = 48.1 bits (24), Expect = 6e-004
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcg 472
||||||||||||||||||||||||
Sbjct: 489 cggcgggtggtgcaacccgccgcg 466
>gb|CA022537.1|CA022537 HZ43I17r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43I17
5-PRIME, mRNA sequence
Length = 522
Score = 48.1 bits (24), Expect = 6e-004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 295 tgagcacggtgctgttcggtgacggcgcggcctgcggcgggtgctacgaggtgcgctgcg 354
||||||||| ||||||| ||||||||||| ||||| |||||||||| |||||||||
Sbjct: 277 tgagcacggcgctgttcaacgacggcgcggcgtgcgggtcgtgctacgagctgcgctgcg 336
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcg 472
|||||| |||||||||||||||||
Sbjct: 425 cggcggctggtgcaacccgccgcg 448
>gb|BG368084.2|BG368084 HVSMEi0015J17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0015J17f, mRNA sequence
Length = 852
Score = 46.1 bits (23), Expect = 0.002
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtggcgtgc 563
||||||||||| ||| ||| ||||||| |||||||||||
Sbjct: 532 gccggcatcgtccccgtctgctaccgccgggtggcgtgc 570
>gb|BI779583.2|BI779583 EBro01_SQ004_H20_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ004_H20 5', mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 450 ggcgggtggtgcaacccgccgcg 472
|||||||||||||||||||||||
Sbjct: 424 ggcgggtggtgcaacccgccgcg 446
>gb|BI957392.1|BI957392 HVSMEn0009F06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009F06f, mRNA sequence
Length = 665
Score = 44.1 bits (22), Expect = 0.010
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 524 ggccggcatcgtgcccatctcctaccgcagggtg 557
|||||||||||||||| | |||||||| ||||||
Sbjct: 346 ggccggcatcgtgcccgtttcctaccggagggtg 379
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 21 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 80
Query: 247 g 247
|
Sbjct: 81 g 81
Score = 40.1 bits (20), Expect = 0.15
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcg 472
|||||| |||||||||||||||||
Sbjct: 271 cggcggctggtgcaacccgccgcg 294
>gb|BQ765644.1|BQ765644 EBro03_SQ007_C21_R root, 3 week, waterlogged, cv Optic, EBro03
Hordeum vulgare subsp. vulgare cDNA clone
EBro03_SQ007_C21 5', mRNA sequence
Length = 413
Score = 44.1 bits (22), Expect = 0.010
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 186 cccgcccacgcgaccttctacggcgg 211
|||||||||||||| |||||||||||
Sbjct: 149 cccgcccacgcgacgttctacggcgg 174
>gb|AL503556.1|AL503556 AL503556 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW02J12T 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 387 gccggcatcgtgcccgtttcctaccggagggtg 419
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 59 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 118
Query: 247 g 247
|
Sbjct: 119 g 119
>gb|BF626312.1|BF626312 HVSMEa0018F04f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018F04f, mRNA sequence
Length = 773
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 460 gccggcatcgtgcccgtttcctaccggagggtg 492
>gb|BF257120.2|BF257120 HVSMEf0011O18f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0011O18f, mRNA sequence
Length = 539
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 414 cggcggctggtgcaacccgccgcgcgcccacttcgac 450
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 164 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 223
Query: 247 g 247
|
Sbjct: 224 g 224
>gb|BF260514.2|BF260514 HVSMEf0022D10f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0022D10f, mRNA sequence
Length = 768
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 136 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 195
Query: 247 g 247
|
Sbjct: 196 g 196
>gb|BI950759.1|BI950759 HVSMEl0023B18f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023B18f, mRNA sequence
Length = 570
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 162 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 221
Query: 247 g 247
|
Sbjct: 222 g 222
>gb|BI950803.1|BI950803 HVSMEl0023D24f Hordeum vulgare spike EST library HVcDNA0012
(Fusarium infected) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEl0023D24f, mRNA sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.038
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| ||||||||||| || |||| ||||||||| | || ||||||||||
Sbjct: 162 ccgcccacgccaccttctacgggggcggggacccgtccggcacaatgggcggcgcgtgcg 221
Query: 247 ggtac 251
|||||
Sbjct: 222 ggtac 226
>gb|BI956638.1|BI956638 HVSMEn0004I04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0004I04f, mRNA sequence
Length = 894
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 169 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 228
Query: 247 g 247
|
Sbjct: 229 g 229
>gb|BI957701.1|BI957701 HVSMEn0010L18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010L18f, mRNA sequence
Length = 677
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 176 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 235
Query: 247 g 247
|
Sbjct: 236 g 236
>gb|BI957889.1|BI957889 HVSMEn0011P08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0011P08f, mRNA sequence
Length = 1124
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 174 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 233
Query: 247 g 247
|
Sbjct: 234 g 234
>gb|BE215000.1|BE215000 HV_CEb0005H19f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0005H19f, mRNA sequence
Length = 904
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 433 cggcggctggtgcaacccgccgcgcgcccacttcgac 469
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 183 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 242
Query: 247 g 247
|
Sbjct: 243 g 243
>gb|BI958257.1|BI958257 HVSMEn0014B22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014B22f, mRNA sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 157 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 216
Query: 247 g 247
|
Sbjct: 217 g 217
>gb|BI958334.1|BI958334 HVSMEn0014H08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014H08f, mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 483 gccggcatcgtgcccgtttcctaccggagggtg 515
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 407 cggcggctggtgcaacccgccgcgcgcccacttcgac 443
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 157 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 216
Query: 247 g 247
|
Sbjct: 217 g 217
>gb|BI959362.1|BI959362 HVSMEn0019G01f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019G01f, mRNA sequence
Length = 669
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 155 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 214
Query: 247 g 247
|
Sbjct: 215 g 215
>gb|BI960235.1|BI960235 HVSMEn0023N12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023N12f, mRNA sequence
Length = 667
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 265 gccggcatcgtgcccgtttcctaccggagggtg 297
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 189 cggcggctggtgcaacccgccgcgcgcccacttcgac 225
>gb|BF253497.3|BF253497 HVSMEf0001B16f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0001B16f, mRNA sequence
Length = 574
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 247 gccggcatcgtgcccgtttcctaccggagggtg 279
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 171 cggcggctggtgcaacccgccgcgcgcccacttcgac 207
>gb|BF065271.3|BF065271 HV_CEb0024O07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0024O07f, mRNA sequence
Length = 823
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 438 cggcggctggtgcaacccgccgcgcgcccacttcgac 474
Score = 42.1 bits (21), Expect = 0.038
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgg 211
|||||||||| ||||||||||||||
Sbjct: 187 ccgcccacgccaccttctacggcgg 211
>gb|AV922591.1|AV922591 AV922591 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags18m24 3', mRNA sequence
Length = 701
Score = 42.1 bits (21), Expect = 0.038
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 566 gaagcagggcggcatccggtacaccatcaccgggaacaagtacttcaacatggtgacgat 625
|||| |||| |||||||||| |||||||| ||| || ||||||||| ||||| | |
Sbjct: 700 gaagaaggggggcatccggttcaccatcaacggccactcctacttcaacctggtgctggt 641
Query: 626 caccaacgtaggcggcgccggcgac 650
|||||||| | |||||||||||||
Sbjct: 640 gaccaacgtggccggcgccggcgac 616
>gb|BJ454545.1|BJ454545 BJ454545 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 5', mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 184 gccggcatcgtgcccgtttcctaccggagggtg 216
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 108 cggcggctggtgcaacccgccgcgcgcccacttcgac 144
>gb|BJ462348.1|BJ462348 BJ462348 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak24n09 3', mRNA sequence
Length = 720
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Minus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 659 cggcggctggtgcaacccgccgcgcgcccacttcgac 623
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 583 gccggcatcgtgcccgtttcctaccggagggtg 551
>gb|BQ465629.1|BQ465629 HU04D11r HU Hordeum vulgare subsp. vulgare cDNA clone HU04D11
5-PRIME, mRNA sequence
Length = 625
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 122 gccggcatcgtgcccgtttcctaccggagggtg 154
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 46 cggcggctggtgcaacccgccgcgcgcccacttcgac 82
>gb|BQ663324.1|BQ663324 HU02C09u HU Hordeum vulgare subsp. vulgare cDNA clone HU02C09
3-PRIME, mRNA sequence
Length = 492
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 411 cggcggctggtgcaacccgccgcgcgcccacttcgac 447
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 161 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 220
Query: 247 g 247
|
Sbjct: 221 g 221
>gb|BQ768669.1|BQ768669 EBro08_SQ012_H11_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ012_H11 5', mRNA sequence
Length = 590
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 461 gccggcatcgtgcccgtttcctaccggagggtg 493
>gb|CA005047.1|CA005047 HU12E04u HU Hordeum vulgare subsp. vulgare cDNA clone HU12E04
3-PRIME, mRNA sequence
Length = 529
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 108 gccggcatcgtgcccgtttcctaccggagggtg 140
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 32 cggcggctggtgcaacccgccgcgcgcccacttcgac 68
>gb|CA006626.1|CA006626 HU05D17r HU Hordeum vulgare subsp. vulgare cDNA clone HU05D17
5-PRIME, mRNA sequence
Length = 534
Score = 42.1 bits (21), Expect = 0.038
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 525 gccggcatcgtgcccatctcctaccgcagggtg 557
||||||||||||||| | |||||||| ||||||
Sbjct: 327 gccggcatcgtgcccgtttcctaccggagggtg 359
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 251 cggcggctggtgcaacccgccgcgcgcccacttcgac 287
>gb|CA009609.1|CA009609 HU14J18r HU Hordeum vulgare subsp. vulgare cDNA clone HU14J18
5-PRIME, mRNA sequence
Length = 465
Score = 42.1 bits (21), Expect = 0.038
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 449 cggcgggtggtgcaacccgccgcgggagcacttcgac 485
|||||| ||||||||||||||||| | |||||||||
Sbjct: 422 cggcggctggtgcaacccgccgcgcgcccacttcgac 458
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 172 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 231
Query: 247 g 247
|
Sbjct: 232 g 232
>gb|CA018512.1|CA018512 HV08N14r HV Hordeum vulgare subsp. vulgare cDNA clone HV08N14
5-PRIME, mRNA sequence
Length = 294
Score = 42.1 bits (21), Expect = 0.038
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 187 ccgcccacgcgaccttctacggcgggcgggatgggtccggcaccacggcgggcgcgtgcg 246
|||||||||| |||||||||||||| | || | ||||||||| | || ||||||||||
Sbjct: 189 ccgcccacgccaccttctacggcggcggcgacgcgtccggcacaatgggcggcgcgtgcg 248
Query: 247 g 247
|
Sbjct: 249 g 249
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153,911
Number of Sequences: 312970
Number of extensions: 153911
Number of successful extensions: 44186
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 59
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 43943
Number of HSP's gapped (non-prelim): 221
length of query: 1086
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1067
effective length of database: 169,188,109
effective search space: 180523712303
effective search space used: 180523712303
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)