BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023585.2.1
(635 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA li... 361 2e-098
gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA li... 287 2e-076
gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa... 141 3e-032
gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA li... 141 3e-032
gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA li... 141 3e-032
gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. v... 141 3e-032
gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. v... 141 3e-032
gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. v... 105 2e-021
gb|CA028206.1|CA028206 HZ61F01r HZ Hordeum vulgare subsp. v... 100 1e-019
gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA li... 94 7e-018
gb|CK122310.1|CK122310 BES1824102n07 BES1824 Hordeum vulgar... 90 1e-016
gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, ... 86 2e-015
gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. v... 86 2e-015
gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. v... 84 6e-015
gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. v... 66 2e-009
gb|BJ457634.1|BJ457634 BJ457634 K. Sato unpublished cDNA li... 64 6e-009
gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. v... 62 2e-008
gb|BJ450210.1|BJ450210 BJ450210 K. Sato unpublished cDNA li... 46 0.001
gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedl... 44 0.006
gb|BJ458585.1|BJ458585 BJ458585 K. Sato unpublished cDNA li... 44 0.006
gb|BG415887.1|BG415887 HVSMEk0008K18f Hordeum vulgare testa... 40 0.086
emb|AJ234606.1|HVU234606 Hordeum vulgare genomic DNA fragme... 38 0.34
>gb|AV921670.1|AV921670 AV921670 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 3', mRNA sequence
Length = 589
Score = 361 bits (182), Expect = 2e-098
Identities = 300/338 (88%), Gaps = 1/338 (0%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatcc-agggaacaagtaggcccgctca 59
|||||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||||
Sbjct: 541 gagtttgatttctacctctgtagtcacgctggaatcccagggtacaagtaggccagctca 482
Query: 60 ctaccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaa 119
||||||||||||||||||||||||||| ||| |||||||||||||||| || |||||||
Sbjct: 481 ctaccatgtcctctgggatgagaacaacttctcagcagacgaaatgcagacgttgacaaa 422
Query: 120 caacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcata 179
|||||||||||||||||| || |||||||| ||||| ||||| || ||||| ||||||||
Sbjct: 421 caacctttgctacacttacgcacggtgcacgcgctctgtttccgtcgtcccacctgcata 362
Query: 180 ctacgcacacctggcagcattccgggcgcggttctacatggaaccagagatgtcggagaa 239
||||| || ||||| |||||||||||||||||||||||||| || ||| ||||||||||
Sbjct: 361 ttacgcgcatctggctgcattccgggcgcggttctacatggagccggagctgtcggagaa 302
Query: 240 ccagacgtcgaagagctccaatggcacgaacggaggcttggtgaagcccctgcctgctgt 299
||| |||||||||||||||| ||| ||||| || || |||||||| |||| |||||
Sbjct: 301 ccacacgtcgaagagctccagtgggacgaatggtacctccgtgaagcctttgcccgctgt 242
Query: 300 gaaggagaaggtgaaaagggtgatgttctactgctgac 337
||| ||||||||||| ||||||||||||||||| ||||
Sbjct: 241 gaaagagaaggtgaagagggtgatgttctactgttgac 204
>gb|AV916245.1|AV916245 AV916245 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags12e13 5', mRNA sequence
Length = 481
Score = 287 bits (145), Expect = 2e-076
Identities = 202/221 (91%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 250 gagtttgatttctacctctgtagtcacgctggaatccagggtacaagtaggccagctcac 309
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|||||||||||||||||||||||||| ||| |||||||||||||||| || ||||||||
Sbjct: 310 taccatgtcctctgggatgagaacaacttctcagcagacgaaatgcagacgttgacaaac 369
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||||||||||||||| || |||||||| ||||| ||||| || ||||| ||||||||
Sbjct: 370 aacctttgctacacttacgcacggtgcacgcgctctgtttccgtcgtcccacctgcatat 429
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 430 tacgcgcatctggctgcattccgggcgcggttctacatgga 470
>gb|BG415995.2|BG415995 HVSMEk0009F13f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0009F13f, mRNA sequence
Length = 970
Score = 141 bits (71), Expect = 3e-032
Identities = 179/215 (83%)
Strand = Plus / Plus
Query: 7 gatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccat 66
||||||||| | ||||| |||||||| || ||||||||||| |||| || ||||| |||
Sbjct: 142 gatttctacttgtgtagccatgctggcattcagggaacaagccggcctgcccactatcat 201
Query: 67 gtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctt 126
|| |||||||| |||||||| || || || || || ||||||| || |||||||||||
Sbjct: 202 gttctctgggacgagaacaaatttactgctgatgagttgcaaactctcacaaacaacctg 261
Query: 127 tgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgca 186
|||||||| ||||| || ||||| ||||| || || |||| |||||||||||||| ||
Sbjct: 262 tgctacacgtatgctcgatgcacccgctctgtatcgattgttcctcctgcatactatgcc 321
Query: 187 cacctggcagcattccgggcgcggttctacatgga 221
|| |||||||| |||||||| ||||||||||||||
Sbjct: 322 catctggcagccttccgggctcggttctacatgga 356
>gb|BJ468650.1|BJ468650 BJ468650 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags39l05 3', mRNA sequence
Length = 673
Score = 141 bits (71), Expect = 3e-032
Identities = 179/215 (83%)
Strand = Plus / Minus
Query: 7 gatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccat 66
||||||||| | ||||| |||||||| || ||||||||||| |||| || ||||| |||
Sbjct: 653 gatttctacttgtgtagccatgctggcattcagggaacaagccggcctgcccactatcat 594
Query: 67 gtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctt 126
|| |||||||| |||||||| || || || || || ||||||| || |||||||||||
Sbjct: 593 gttctctgggacgagaacaaatttactgctgatgagttgcaaactctcacaaacaacctg 534
Query: 127 tgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgca 186
|||||||| ||||| || ||||| ||||| || || |||| |||||||||||||| ||
Sbjct: 533 tgctacacgtatgctcgatgcacccgctctgtatcgattgttcctcctgcatactatgcc 474
Query: 187 cacctggcagcattccgggcgcggttctacatgga 221
|| |||||||| |||||||| ||||||||||||||
Sbjct: 473 catctggcagccttccgggctcggttctacatgga 439
>gb|BJ473415.1|BJ473415 BJ473415 K. Sato unpublished cDNA library, cv. Haruna Nijo adult,
heading stage top three leaves Hordeum vulgare subsp.
vulgare cDNA clone baal12f16 3', mRNA sequence
Length = 588
Score = 141 bits (71), Expect = 3e-032
Identities = 179/215 (83%)
Strand = Plus / Minus
Query: 7 gatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccat 66
||||||||| | ||||| |||||||| || ||||||||||| |||| || ||||| |||
Sbjct: 505 gatttctacttgtgtagccatgctggcattcagggaacaagccggcctgcccactatcat 446
Query: 67 gtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctt 126
|| |||||||| |||||||| || || || || || ||||||| || |||||||||||
Sbjct: 445 gttctctgggacgagaacaaatttactgctgatgagttgcaaactctcacaaacaacctg 386
Query: 127 tgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgca 186
|||||||| ||||| || ||||| ||||| || || |||| |||||||||||||| ||
Sbjct: 385 tgctacacgtatgctcgatgcacccgctctgtatcgattgttcctcctgcatactatgcc 326
Query: 187 cacctggcagcattccgggcgcggttctacatgga 221
|| |||||||| |||||||| ||||||||||||||
Sbjct: 325 catctggcagccttccgggctcggttctacatgga 291
>gb|CA030113.1|CA030113 HX06C02r HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
5-PRIME, mRNA sequence
Length = 624
Score = 141 bits (71), Expect = 3e-032
Identities = 179/215 (83%)
Strand = Plus / Plus
Query: 7 gatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccat 66
||||||||| | ||||| |||||||| || ||||||||||| |||| || ||||| |||
Sbjct: 255 gatttctacttgtgtagccatgctggcattcagggaacaagccggcctgcccactatcat 314
Query: 67 gtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctt 126
|| |||||||| |||||||| || || || || || ||||||| || |||||||||||
Sbjct: 315 gttctctgggacgagaacaaatttactgctgatgagttgcaaactctcacaaacaacctg 374
Query: 127 tgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgca 186
|||||||| ||||| || ||||| ||||| || || |||| |||||||||||||| ||
Sbjct: 375 tgctacacgtatgctcgatgcacccgctctgtatcgattgttcctcctgcatactatgcc 434
Query: 187 cacctggcagcattccgggcgcggttctacatgga 221
|| |||||||| |||||||| ||||||||||||||
Sbjct: 435 catctggcagccttccgggctcggttctacatgga 469
>gb|CB874722.1|CB874722 HX06C02w HX Hordeum vulgare subsp. vulgare cDNA clone HX06C02
3-PRIME, mRNA sequence
Length = 645
Score = 141 bits (71), Expect = 3e-032
Identities = 179/215 (83%)
Strand = Plus / Minus
Query: 7 gatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcactaccat 66
||||||||| | ||||| |||||||| || ||||||||||| |||| || ||||| |||
Sbjct: 554 gatttctacttgtgtagccatgctggcattcagggaacaagccggcctgcccactatcat 495
Query: 67 gtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaacaacctt 126
|| |||||||| |||||||| || || || || || ||||||| || |||||||||||
Sbjct: 494 gttctctgggacgagaacaaatttactgctgatgagttgcaaactctcacaaacaacctg 435
Query: 127 tgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatactacgca 186
|||||||| ||||| || ||||| ||||| || || |||| |||||||||||||| ||
Sbjct: 434 tgctacacgtatgctcgatgcacccgctctgtatcgattgttcctcctgcatactatgcc 375
Query: 187 cacctggcagcattccgggcgcggttctacatgga 221
|| |||||||| |||||||| ||||||||||||||
Sbjct: 374 catctggcagccttccgggctcggttctacatgga 340
>gb|CB874756.1|CB874756 HX06D16w HX Hordeum vulgare subsp. vulgare cDNA clone HX06D16
3-PRIME, mRNA sequence
Length = 635
Score = 105 bits (53), Expect = 2e-021
Identities = 179/221 (80%)
Strand = Plus / Minus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||| | ||||| || ||||| || ||||||||||| | || |||||
Sbjct: 555 gagtttgatttctacttgtgtagccacgctggcattcagggaacaagccgtcctgctcat 496
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
|| || || || |||||||||||||| ||||| || || || ||||||| || ||||||
Sbjct: 495 tatcacgtactatgggatgagaacaagttcactgctgatgagttgcaaactctaacaaac 436
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||| | |||||||| ||||| ||||||| ||||| || || |||| ||||| |||||
Sbjct: 435 aacttgtgctacacgtatgctaggtgcacccgctctgtatcaattgtgcctccagcatat 376
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatgga 221
|| ||||| ||||||| |||||||| ||||| ||||||||
Sbjct: 375 tatgcacatttggcagccttccgggctcggttttacatgga 335
>gb|CA028206.1|CA028206 HZ61F01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ61F01
5-PRIME, mRNA sequence
Length = 468
Score = 99.6 bits (50), Expect = 1e-019
Identities = 101/118 (85%)
Strand = Plus / Plus
Query: 104 tgcaaacactgacaaacaacctttgctacacttatgcccggtgcacacgctcggtttctg 163
||||||| || ||||||||||| |||||||| ||||| || ||||| ||||| || ||
Sbjct: 11 tgcaaactctcacaaacaacctgtgctacacgtatgctcgatgcacccgctctgtatcga 70
Query: 164 ttgtccctcctgcatactacgcacacctggcagcattccgggcgcggttctacatgga 221
|||| |||||||||||||| || || |||||||| |||||||| ||||||||||||||
Sbjct: 71 ttgttcctcctgcatactatgcccatctggcagccttccgggctcggttctacatgga 128
>gb|BJ451080.1|BJ451080 BJ451080 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 5', mRNA sequence
Length = 576
Score = 93.7 bits (47), Expect = 7e-018
Identities = 179/223 (80%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||| ||||||||||| ||||| |||||||| || ||||||||||| | || || ||
Sbjct: 244 gagttcgatttctacctttgtagccatgctggtattcagggaacaagccgccctgcgcat 303
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||||||||| ||||||||||||||||| || || || | |||| || || || |||
Sbjct: 304 taccatgtcctttgggatgagaacaattttaccgcggatggtttgcagactctcacgaac 363
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| || || ||||||| || || || || |||| ||||| ||||||
Sbjct: 364 aacctgtgctacacctacgcaaggtgcacccgttctgtatcgattgtgcctccggcatac 423
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaac 223
|| || ||||| || || || || || ||||||||||||||||
Sbjct: 424 tatgctcacctcgcggcttttcgagctcggttctacatggaac 466
>gb|CK122310.1|CK122310 BES1824102n07 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010N072 5-PRIME, mRNA sequence
Length = 614
Score = 89.7 bits (45), Expect = 1e-016
Identities = 90/105 (85%)
Strand = Plus / Plus
Query: 117 aaacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgc 176
||||||||| |||||||| ||||| || ||||| ||||| || || |||| ||||||||
Sbjct: 1 aaacaacctgtgctacacgtatgctcgatgcacccgctctgtatcgattgttcctcctgc 60
Query: 177 atactacgcacacctggcagcattccgggcgcggttctacatgga 221
|||||| || || |||||||| |||||||| ||||||||||||||
Sbjct: 61 atactatgcccatctggcagccttccgggctcggttctacatgga 105
>gb|BM100617.2|BM100617 EBma01_SQ005_L23_R maternal, 4 DPA, no treatment, cv Optic, EBma01
Hordeum vulgare subsp. vulgare cDNA clone
EBma01_SQ005_L23 5', mRNA sequence
Length = 670
Score = 85.7 bits (43), Expect = 2e-015
Identities = 163/203 (80%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| ||||| || || ||||| ||||| || || |||||
Sbjct: 468 gagtttgatttctacctgtgtagccatgccggtattcagggcacaagcagaccaactcac 527
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||||||||||| ||||| ||| |||||| || || | |||| || || |||
Sbjct: 528 taccatgtcctcttcgatgaaaacggtttcactgccgatgggctgcagcagctcaccaac 587
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| || || || ||||| ||||| || |||||||| |||||||| |||
Sbjct: 588 aacctgtgctacacatacgctcgatgcactcgctctgtctctgttgttcctcctgcctac 647
Query: 181 tacgcacacctggcagcattccg 203
||||| |||||||| || |||||
Sbjct: 648 tacgctcacctggctgcgttccg 670
>gb|BU973725.1|BU973725 HB25M17r BC Hordeum vulgare subsp. vulgare cDNA clone HB25M17
5-PRIME, mRNA sequence
Length = 506
Score = 85.7 bits (43), Expect = 2e-015
Identities = 163/203 (80%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| ||||| || || ||||| ||||| || || |||||
Sbjct: 19 gagtttgatttctacctgtgtagccatgccggtattcagggcacaagcagaccaactcac 78
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||||||||||| ||||| ||| |||||| || || | |||| || || |||
Sbjct: 79 taccatgtcctcttcgatgaaaacggtttcactgccgatgggctgcagcagctcaccaac 138
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| || || || ||||| ||||| || |||||||| |||||||| |||
Sbjct: 139 aacctgtgctacacatacgctcgatgcactcgctctgtctctgttgttcctcctgcctac 198
Query: 181 tacgcacacctggcagcattccg 203
||||| |||||||| || |||||
Sbjct: 199 tacgctcacctggctgcgttccg 221
>gb|CB875233.1|CB875233 HX07K22w HX Hordeum vulgare subsp. vulgare cDNA clone HX07K22
3-PRIME, mRNA sequence
Length = 603
Score = 83.8 bits (42), Expect = 6e-015
Identities = 156/194 (80%)
Strand = Plus / Minus
Query: 28 gctggaatccagggaacaagtaggcccgctcactaccatgtcctctgggatgagaacaat 87
||||| || ||||||||||| | || ||||| || || || || ||||||||||||||
Sbjct: 595 gctggcattcagggaacaagccgtcctgctcattatcacgtactatgggatgagaacaag 536
Query: 88 ttcacagcagacgaaatgcaaacactgacaaacaacctttgctacacttatgcccggtgc 147
||||| || || || ||||||| || ||||||||| | |||||||| ||||| |||||
Sbjct: 535 ttcactgctgatgagttgcaaactctaacaaacaacttgtgctacacgtatgctaggtgc 476
Query: 148 acacgctcggtttctgttgtccctcctgcatactacgcacacctggcagcattccgggcg 207
|| ||||| || || |||| ||||| ||||| || ||||| ||||||| ||||||||
Sbjct: 475 acccgctctgtatcaattgtgcctccagcatattatgcacatttggcagccttccgggct 416
Query: 208 cggttctacatgga 221
||||| ||||||||
Sbjct: 415 cggttttacatgga 402
>gb|BU971142.1|BU971142 HB16L19r BC Hordeum vulgare subsp. vulgare cDNA clone HB16L19
5-PRIME, mRNA sequence
Length = 470
Score = 65.9 bits (33), Expect = 2e-009
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||||| ||||| ||||| || || ||||| ||||| || || |||||
Sbjct: 319 gagtttgatttctacctgtgtagccatgccggtattcagggcacaagcagaccaactcac 378
Query: 61 taccatgtcctct 73
|||||||||||||
Sbjct: 379 taccatgtcctct 391
>gb|BJ457634.1|BJ457634 BJ457634 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28j10 3', mRNA sequence
Length = 463
Score = 63.9 bits (32), Expect = 6e-009
Identities = 131/164 (79%)
Strand = Plus / Minus
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaacactgacaaac 120
||||||||||| ||||||||||||||||| || || || | |||| || || || |||
Sbjct: 456 taccatgtcctttgggatgagaacaattttaccgcggatggtttgcagactctcacgaac 397
Query: 121 aacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgcatac 180
||||| |||||||| || || ||||||| || || || || |||| ||||| ||||||
Sbjct: 396 aacctgtgctacacctacgcaaggtgcacccgttctgtatcgattgtgcctccggcatac 337
Query: 181 tacgcacacctggcagcattccgggcgcggttctacatggaacc 224
|| || ||||| || || || || || |||||||||||||||||
Sbjct: 336 tatgctcacctcgcggcttttcgagctcggttctacatggaacc 293
>gb|BU996805.1|BU996805 HM14N04r HM Hordeum vulgare subsp. vulgare cDNA clone HM14N04
5-PRIME, mRNA sequence
Length = 612
Score = 61.9 bits (31), Expect = 2e-008
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaag 47
||||||||||||| ||||||||| |||||||| ||| ||||||||||
Sbjct: 326 gagtttgatttcttcctctgtagccatgctgggatcaagggaacaag 372
>gb|BJ450210.1|BJ450210 BJ450210 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak28j10 5', mRNA sequence
Length = 507
Score = 46.1 bits (23), Expect = 0.001
Identities = 86/107 (80%)
Strand = Plus / Plus
Query: 118 aacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgca 177
|||||||| |||||||| || || ||||||| || || || || |||| ||||| |||
Sbjct: 51 aacaacctgtgctacacctacgcaaggtgcacccgttctgtatcgattgtgcctccggca 110
Query: 178 tactacgcacacctggcagcattccgggcgcggttctacatggaacc 224
||||| || ||||| || || || || || |||||||||||||||||
Sbjct: 111 tactatgctcacctcgcggcttttcgagctcggttctacatggaacc 157
>gb|BE215344.1|BE215344 HV_CEb0006I15f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0006I15f, mRNA sequence
Length = 679
Score = 44.1 bits (22), Expect = 0.006
Identities = 88/110 (80%)
Strand = Plus / Plus
Query: 1 gagtttgatttctacctctgtagtcatgctggaatccagggaacaagtaggcccgctcac 60
||||||||||||||| | |||| || ||||| || ||||||||||| |||| ||| |
Sbjct: 425 gagtttgatttctacttgtgtaaccacgctggcattcagggaacaagccggcctgctaat 484
Query: 61 taccatgtcctctgggatgagaacaatttcacagcagacgaaatgcaaac 110
|| || || || |||||||| ||||| ||||| || || ||| |||||||
Sbjct: 485 tatcacgtactatgggatgaaaacaagttcactgctgatgaattgcaaac 534
>gb|BJ458585.1|BJ458585 BJ458585 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak32j21 3', mRNA sequence
Length = 614
Score = 44.1 bits (22), Expect = 0.006
Identities = 85/106 (80%)
Strand = Plus / Minus
Query: 118 aacaacctttgctacacttatgcccggtgcacacgctcggtttctgttgtccctcctgca 177
|||||||| |||||||| || || ||||||| || || || || |||| ||||| |||
Sbjct: 574 aacaacctgtgctacacctacgcaaggtgcacccgttctgtatcgattgtgcctccggca 515
Query: 178 tactacgcacacctggcagcattccgggcgcggttctacatggaac 223
||||| || ||||| || || || || || ||||||||||||||||
Sbjct: 514 tactatgctcacctcgcggcttttcgagctcggttctacatggaac 469
>gb|BG415887.1|BG415887 HVSMEk0008K18f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0008K18f, mRNA sequence
Length = 671
Score = 40.1 bits (20), Expect = 0.086
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 305 agaaggtgaaaagggtgatg 324
||||||||||||||||||||
Sbjct: 420 agaaggtgaaaagggtgatg 401
>emb|AJ234606.1|HVU234606 Hordeum vulgare genomic DNA fragment; clone MWG0876.uni
Length = 486
Score = 38.2 bits (19), Expect = 0.34
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 310 gtgaaaagggtgatgttctactgctga 336
||||||||| | |||||||||||||||
Sbjct: 77 gtgaaaaggctcatgttctactgctga 51
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,489
Number of Sequences: 312970
Number of extensions: 55489
Number of successful extensions: 14977
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14945
Number of HSP's gapped (non-prelim): 30
length of query: 635
length of database: 175,134,539
effective HSP length: 19
effective length of query: 616
effective length of database: 169,188,109
effective search space: 104219875144
effective search space used: 104219875144
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)