BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA li... 410 e-113
gb|BM443862.2|BM443862 EBem09_SQ001_M07_R embryo, 1 Day ger... 262 2e-068
gb|BJ467938.1|BJ467938 BJ467938 K. Sato unpublished cDNA li... 254 4e-066
gb|BM444115.1|BM444115 EBem09_SQ004_D08_R embryo, 1 Day ger... 224 4e-057
gb|BM444949.1|BM444949 EBem09_SQ006_P20_R embryo, 1 Day ger... 163 1e-038
gb|BQ664391.1|BQ664391 HV03B24u HV Hordeum vulgare subsp. v... 101 4e-020
gb|AL499948.1|AL499948 AL499948 Hordeum vulgare Barke etiol... 84 9e-015
gb|CK124684.1|CK124684 BES1824109p11 BES1824 Hordeum vulgar... 66 2e-009
gb|AV834161.1|AV834161 AV834161 K. Sato unpublished cDNA li... 48 5e-004
gb|BJ463761.1|BJ463761 BJ463761 K. Sato unpublished cDNA li... 46 0.002
gb|BU986456.1|BU986456 HF11O19r HF Hordeum vulgare subsp. v... 46 0.002
gb|CA024809.1|CA024809 HZ50F23r HZ Hordeum vulgare subsp. v... 46 0.002
gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. v... 40 0.12
gb|AV834211.1|AV834211 AV834211 K. Sato unpublished cDNA li... 38 0.46
gb|BF630057.2|BF630057 HVSMEb0007N02f Hordeum vulgare seedl... 38 0.46
>gb|BJ467937.1|BJ467937 BJ467937 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g13 3', mRNA sequence
Length = 703
Score = 410 bits (207), Expect = e-113
Identities = 334/375 (89%), Gaps = 1/375 (0%)
Strand = Plus / Plus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||| ||||||| ||||||||||| ||||| |||||||||||| | |||| || ||||||
Sbjct: 329 aaaagttctaatattgatacacattaatcagcgcatgaagcaccgttgaagcagagggtg 388
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
|||||| ||||||||||| ||||| |||| |||||||||||||| |||||||| |||||
Sbjct: 389 tgaataatccacatagttgtcccagaagcctttgtacttctccatcccaattttcagcca 448
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
|||||||| ||||||||||| |||| |||||||||||| || |||||| || |||| ||
Sbjct: 449 tggcttcaagtttccattgtaatgcaatactgcaccttctttaatagtatcaggatcgac 508
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
|||||||||||| || ||||| ||||||||||| || | || ||||||||||||||||||
Sbjct: 509 agttgtgtagcccagccccaagacatgccattttgggttcagtgcttcaaccaagccata 568
Query: 705 gaaagcaagaagtccaggtggtaaagacccaagcttccatagagtatgatca-cattgcg 763
|||||||||||| |||||||||||||| || |||||||| || ||||||||| |||||||
Sbjct: 569 gaaagcaagaagcccaggtggtaaagatccgagcttccacagggtatgatcagcattgcg 628
Query: 764 ctcctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaag 823
||||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 629 ctcctgccaataatgatatatacctgtaacattcttgttcctccattcaacaagatcaag 688
Query: 824 cacgttcataccaaa 838
||| |||||||||||
Sbjct: 689 cacattcataccaaa 703
>gb|BM443862.2|BM443862 EBem09_SQ001_M07_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ001_M07 5', mRNA sequence
Length = 512
Score = 262 bits (132), Expect = 2e-068
Identities = 199/220 (90%), Gaps = 1/220 (0%)
Strand = Plus / Minus
Query: 628 atagtagcaagatccacagttgtgtagccaagtcccaaaacatgccatttgggatccaat 687
|||||| || |||| |||||||||||||| || ||||| ||||||||||| || | || |
Sbjct: 511 atagtatcaggatcgacagttgtgtagcccagccccaagacatgccattttgggttcagt 452
Query: 688 gcttcaaccaagccatagaaagcaagaagtccaggtggtaaagacccaagcttccataga 747
||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct: 451 gcttcaaccaagccatagaaagcaagaagcccaggtggtaaagatccgagcttccacagg 392
Query: 748 gtatgatca-cattgcgctcctgccaataatgatatatgcctgtcacattcttgttcctc 806
||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 391 gtatgatcagcattgcgctcctgccaataatgatatatacctgtaacattcttgttcctc 332
Query: 807 cattcaaccagatcaagcacgttcataccaaatgcccagc 846
|||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 331 cattcaacaagatcaagcacattcataccaaacgcccagc 292
>gb|BJ467938.1|BJ467938 BJ467938 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g14 3', mRNA sequence
Length = 550
Score = 254 bits (128), Expect = 4e-066
Identities = 221/252 (87%)
Strand = Plus / Plus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||| ||||||| ||||||||||| ||||| |||||||||||| | |||| || ||||||
Sbjct: 297 aaaagttctaatattgatacacattaatcagcgcatgaagcaccgttgaagcagagggtg 356
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtacttctccattccaattttgagcca 584
|||||| ||||||||||| ||||| |||| |||||||||||||| |||||||| |||||
Sbjct: 357 tgaataatccacatagttgtcccagaagcctttgtacttctccatcccaattttcagcca 416
Query: 585 tggcttcatatttccattgtagtgcagtactgcaccttccttgatagtagcaagatccac 644
|||||||| ||||||||||| |||| |||||||||||| || |||||| || |||| ||
Sbjct: 417 tggcttcaagtttccattgtaatgcaatactgcaccttctttaatagtatcaggatcgac 476
Query: 645 agttgtgtagccaagtcccaaaacatgccatttgggatccaatgcttcaaccaagccata 704
|||||||||||| || ||||| ||||||||||| || | || ||||||||||||||||||
Sbjct: 477 agttgtgtagcccagccccaagacatgccattttgggttcagtgcttcaaccaagccata 536
Query: 705 gaaagcaagaag 716
||||||||||||
Sbjct: 537 gaaagcaagaag 548
>gb|BM444115.1|BM444115 EBem09_SQ004_D08_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ004_D08 5', mRNA sequence
Length = 464
Score = 224 bits (113), Expect = 4e-057
Identities = 150/161 (93%), Gaps = 1/161 (0%)
Strand = Plus / Minus
Query: 687 tgcttcaaccaagccatagaaagcaagaagtccaggtggtaaagacccaagcttccatag 746
|||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||
Sbjct: 452 tgcttcaaccaagccatagaaagcaagaagcccaggtggtaaagatccgagcttccacag 393
Query: 747 agtatgatca-cattgcgctcctgccaataatgatatatgcctgtcacattcttgttcct 805
||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 392 ggtatgatcagcattgcgctcctgccaataatgatatatacctgtaacattcttgttcct 333
Query: 806 ccattcaaccagatcaagcacgttcataccaaatgcccagc 846
||||||||| ||||||||||| ||||||||||| |||||||
Sbjct: 332 ccattcaacaagatcaagcacattcataccaaacgcccagc 292
>gb|BM444949.1|BM444949 EBem09_SQ006_P20_R embryo, 1 Day germination, no treatment, cv
Optic, EBem09 Hordeum vulgare subsp. vulgare cDNA clone
EBem09_SQ006_P20 5', mRNA sequence
Length = 417
Score = 163 bits (82), Expect = 1e-038
Identities = 116/126 (92%), Gaps = 1/126 (0%)
Strand = Plus / Minus
Query: 722 gtggtaaagacccaagcttccatagagtatgatca-cattgcgctcctgccaataatgat 780
|||||||||| || |||||||| || ||||||||| ||||||||||||||||||||||||
Sbjct: 417 gtggtaaagatccgagcttccacagggtatgatcagcattgcgctcctgccaataatgat 358
Query: 781 atatgcctgtcacattcttgttcctccattcaaccagatcaagcacgttcataccaaatg 840
|||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||||| |
Sbjct: 357 atatacctgtaacattcttgttcctccattcaacaagatcaagcacattcataccaaacg 298
Query: 841 cccagc 846
||||||
Sbjct: 297 cccagc 292
>gb|BQ664391.1|BQ664391 HV03B24u HV Hordeum vulgare subsp. vulgare cDNA clone HV03B24
3-PRIME, mRNA sequence
Length = 503
Score = 101 bits (51), Expect = 4e-020
Identities = 87/99 (87%)
Strand = Plus / Plus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||| ||||||| ||||||||||| ||||| |||||||||||| | |||| || ||||||
Sbjct: 405 aaaagttctaatattgatacacattaatcagcgcatgaagcaccgttgaagcagagggtg 464
Query: 525 tgaatagtccacatagttatcccaaaagctcttgtactt 563
|||||| ||||||||||| ||||| |||| |||||||||
Sbjct: 465 tgaataatccacatagttgtcccagaagcccttgtactt 503
Score = 56.0 bits (28), Expect = 2e-006
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 107 caaaacttgttgtaacacatcaataatttaaaatcaattctaca 150
|||||||||||||| ||| |||||||||| ||||||||||||||
Sbjct: 44 caaaacttgttgtagcacctcaataattt-aaatcaattctaca 86
>gb|AL499948.1|AL499948 AL499948 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK04D14r 3', mRNA sequence
Length = 520
Score = 83.8 bits (42), Expect = 9e-015
Identities = 74/85 (87%)
Strand = Plus / Plus
Query: 465 aaaaattctaatgttgatacacatcaatcaacgcatgaagcactgctgaatcaaagggtg 524
|||| ||| ||| ||||||||||| ||||| |||||||||||| | |||| |||||||||
Sbjct: 431 aaaagttcnaatattgatacacattaatcagcgcatgaagcaccgttgaagcaaagggtg 490
Query: 525 tgaatagtccacatagttatcccaa 549
|||||| |||||||| || ||||||
Sbjct: 491 tgaataatccacataattgtcccaa 515
Score = 63.9 bits (32), Expect = 8e-009
Identities = 42/44 (95%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 107 caaaacttgttgtaacacatcaataatttaaaatcaattctaca 150
|||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 70 caaaacttgttgtaacacctcaataattt-aaatcaattctaca 112
>gb|CK124684.1|CK124684 BES1824109p11 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P119 5-PRIME, mRNA sequence
Length = 787
Score = 65.9 bits (33), Expect = 2e-009
Identities = 69/81 (85%), Gaps = 1/81 (1%)
Strand = Plus / Minus
Query: 766 cctgccaataatgatatatgcctgtcacattcttgttcctccattcaaccagatcaagca 825
||||||||||||||||||| ||||| |||| ||| | |||||||| | ||||||||||
Sbjct: 787 cctgccaataatgatatatncctgtaccatttctgtnc-tccattcancaagatcaagca 729
Query: 826 cgttcataccaaatgcccagc 846
| ||||| ||||| |||||||
Sbjct: 728 cattcatnccaaacgcccagc 708
>gb|AV834161.1|AV834161 AV834161 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags5h22, mRNA sequence
Length = 714
Score = 48.1 bits (24), Expect = 5e-004
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 579 gagccatggcttcatatttccattgtagtgca 610
|||||| ||||||||||| |||||||||||||
Sbjct: 409 gagccaaggcttcatattgccattgtagtgca 440
>gb|BJ463761.1|BJ463761 BJ463761 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags30g13 5', mRNA sequence
Length = 596
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 816 agatcaagcacgttcataccaaatgcccagc 846
||||||||||| ||||||||||| |||||||
Sbjct: 592 agatcaagcacattcataccaaacgcccagc 562
>gb|BU986456.1|BU986456 HF11O19r HF Hordeum vulgare subsp. vulgare cDNA clone HF11O19
5-PRIME, mRNA sequence
Length = 478
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccatt 602
|||||||||||||||||||||||
Sbjct: 196 agccatggcttcatatttccatt 174
>gb|CA024809.1|CA024809 HZ50F23r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ50F23
5-PRIME, mRNA sequence
Length = 154
Score = 46.1 bits (23), Expect = 0.002
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 580 agccatggcttcatatttccatt 602
|||||||||||||||||||||||
Sbjct: 146 agccatggcttcatatttccatt 124
>gb|BU969156.1|BU969156 HB10L09r BC Hordeum vulgare subsp. vulgare cDNA clone HB10L09
5-PRIME, mRNA sequence
Length = 684
Score = 40.1 bits (20), Expect = 0.12
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 581 gccatggcttcatatttccattgtagtg 608
||||||||||||| ||||| ||||||||
Sbjct: 684 gccatggcttcatgtttccgttgtagtg 657
>gb|AV834211.1|AV834211 AV834211 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags7a24, mRNA sequence
Length = 663
Score = 38.2 bits (19), Expect = 0.46
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 580 agccatggcttcatatttccattgtagtgca 610
||||| || |||||||| |||||||||||||
Sbjct: 464 agccaaggtttcatattaccattgtagtgca 494
>gb|BF630057.2|BF630057 HVSMEb0007N02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007N02f, mRNA sequence
Length = 500
Score = 38.2 bits (19), Expect = 0.46
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 827 gttcataccaaatgcccag 845
|||||||||||||||||||
Sbjct: 416 gttcataccaaatgcccag 434
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,231
Number of Sequences: 312970
Number of extensions: 63231
Number of successful extensions: 17172
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17137
Number of HSP's gapped (non-prelim): 29
length of query: 846
length of database: 175,134,539
effective HSP length: 19
effective length of query: 827
effective length of database: 169,188,109
effective search space: 139918566143
effective search space used: 139918566143
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)