BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2945733.2.1
(885 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ465541.1|BQ465541 HU03P07r HU Hordeum vulgare subsp. v... 505 e-142
gb|BQ466276.1|BQ466276 HT02B10r HT Hordeum vulgare subsp. v... 505 e-142
gb|CA014628.1|CA014628 HT11O06r HT Hordeum vulgare subsp. v... 505 e-142
gb|U01228.1|U01228 Hordeum vulgare Harrington haemoglobin a... 505 e-142
gb|BQ465893.1|BQ465893 HU04P18r HU Hordeum vulgare subsp. v... 482 e-134
gb|AL503784.1|AL503784 AL503784 Hordeum vulgare Barke roots... 478 e-133
gb|CA003688.1|CA003688 HS15E03r HS Hordeum vulgare subsp. v... 466 e-130
gb|CA017690.1|CA017690 HV05O24r HV Hordeum vulgare subsp. v... 464 e-129
gb|BQ465782.1|BQ465782 HU04K20r HU Hordeum vulgare subsp. v... 428 e-118
gb|BQ465502.1|BQ465502 HU03N05r HU Hordeum vulgare subsp. v... 406 e-112
gb|AL505599.1|AL505599 AL505599 Hordeum vulgare Barke roots... 391 e-107
gb|AL504592.1|AL504592 AL504592 Hordeum vulgare Barke roots... 383 e-105
gb|BQ663933.1|BQ663933 HU04K20u HU Hordeum vulgare subsp. v... 333 6e-090
gb|AL502861.1|AL502861 AL502861 Hordeum vulgare Barke roots... 325 1e-087
gb|BQ663745.1|BQ663745 HU03N05u HU Hordeum vulgare subsp. v... 309 8e-083
gb|BF622874.3|BF622874 HVSMEa0009M01f Hordeum vulgare seedl... 289 8e-077
gb|BG299715.2|BG299715 HVSMEa0021I06f Hordeum vulgare seedl... 283 5e-075
gb|CA009955.1|CA009955 HT12D15u HT Hordeum vulgare subsp. v... 194 3e-048
gb|BI777666.2|BI777666 EBro08_SQ001_E09_R root, 3 week, dro... 192 1e-047
gb|BG300640.1|BG300640 HVSMEb0017M11f Hordeum vulgare seedl... 40 0.12
gb|BF266458.3|BF266458 HV_CEa0015D02f Hordeum vulgare seedl... 40 0.12
>gb|BQ465541.1|BQ465541 HU03P07r HU Hordeum vulgare subsp. vulgare cDNA clone HU03P07
5-PRIME, mRNA sequence
Length = 622
Score = 505 bits (255), Expect = e-142
Identities = 405/455 (89%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 123 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 182
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 183 tccgccaaccttgggctccgcttcttcctcaagatcttcgagatcgcgccgtcggcgagg 242
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 243 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaag 302
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggcc 444
|| |||||| ||||||||||||||||||||||||||||||| |||||| | || || |||
Sbjct: 303 acccacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagcc 362
Query: 445 gggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtac 504
|| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 363 ggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatac 422
Query: 505 ggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggag 564
||||| |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct: 423 ggcgtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggag 482
Query: 565 gcgctccccgctgacatgtggagcctcgagatgaagaaagcctgggccgaggcctacagc 624
||||| || |||||||||||| | | |||||||| ||| || |||| |||||| |||
Sbjct: 483 gcgcttccggctgacatgtgggggcccgagatgaggaacgcgtggggcgaggcatacgat 542
Query: 625 cagctggtggcggccatcaagcgggagatgaagcc 659
|| ||||| ||||||||||||| |||||||||||
Sbjct: 543 caactggtcgcggccatcaagcaagagatgaagcc 577
>gb|BQ466276.1|BQ466276 HT02B10r HT Hordeum vulgare subsp. vulgare cDNA clone HT02B10
5-PRIME, mRNA sequence
Length = 598
Score = 505 bits (255), Expect = e-142
Identities = 405/455 (89%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 112 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 171
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 172 tccgccaaccttgggctccgcttcttcctcaagatcttcgagatcgcgccgtcggcgagg 231
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 232 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaag 291
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggcc 444
|| |||||| ||||||||||||||||||||||||||||||| |||||| | || || |||
Sbjct: 292 acccacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagcc 351
Query: 445 gggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtac 504
|| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 352 ggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatac 411
Query: 505 ggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggag 564
||||| |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct: 412 ggcgtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggag 471
Query: 565 gcgctccccgctgacatgtggagcctcgagatgaagaaagcctgggccgaggcctacagc 624
||||| || |||||||||||| | | |||||||| ||| || |||| |||||| |||
Sbjct: 472 gcgcttccggctgacatgtgggggcccgagatgaggaacgcgtggggcgaggcatacgat 531
Query: 625 cagctggtggcggccatcaagcgggagatgaagcc 659
|| ||||| ||||||||||||| |||||||||||
Sbjct: 532 caactggtcgcggccatcaagcaagagatgaagcc 566
>gb|CA014628.1|CA014628 HT11O06r HT Hordeum vulgare subsp. vulgare cDNA clone HT11O06
5-PRIME, mRNA sequence
Length = 646
Score = 505 bits (255), Expect = e-142
Identities = 405/455 (89%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 104 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 163
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 164 tccgccaaccttgggctccgcttcttcctcaagatcttcgagatcgcgccgtcggcgagg 223
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 224 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaag 283
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggcc 444
|| |||||| ||||||||||||||||||||||||||||||| |||||| | || || |||
Sbjct: 284 acccacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagcc 343
Query: 445 gggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtac 504
|| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 344 ggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatac 403
Query: 505 ggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggag 564
||||| |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct: 404 ggcgtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggag 463
Query: 565 gcgctccccgctgacatgtggagcctcgagatgaagaaagcctgggccgaggcctacagc 624
||||| || |||||||||||| | | |||||||| ||| || |||| |||||| |||
Sbjct: 464 gcgcttccggctgacatgtgggggcccgagatgaggaacgcgtggggcgaggcatacgat 523
Query: 625 cagctggtggcggccatcaagcgggagatgaagcc 659
|| ||||| ||||||||||||| |||||||||||
Sbjct: 524 caactggtcgcggccatcaagcaagagatgaagcc 558
>gb|U01228.1|U01228 Hordeum vulgare Harrington haemoglobin apoprotein (hb) mRNA,
complete cds
Length = 939
Score = 505 bits (255), Expect = e-142
Identities = 405/455 (89%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 87 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 146
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 147 tccgccaaccttgggctccgcttcttcctcaagatcttcgagatcgcgccgtcggcgagg 206
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 207 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaag 266
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggcc 444
|| |||||| ||||||||||||||||||||||||||||||| |||||| | || || |||
Sbjct: 267 acccacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagcc 326
Query: 445 gggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtac 504
|| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 327 ggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatac 386
Query: 505 ggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggag 564
||||| |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct: 387 ggcgtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggag 446
Query: 565 gcgctccccgctgacatgtggagcctcgagatgaagaaagcctgggccgaggcctacagc 624
||||| || |||||||||||| | | |||||||| ||| || |||| |||||| |||
Sbjct: 447 gcgcttccggctgacatgtgggggcccgagatgaggaacgcgtggggcgaggcatacgat 506
Query: 625 cagctggtggcggccatcaagcgggagatgaagcc 659
|| ||||| ||||||||||||| |||||||||||
Sbjct: 507 caactggtcgcggccatcaagcaagagatgaagcc 541
>gb|BQ465893.1|BQ465893 HU04P18r HU Hordeum vulgare subsp. vulgare cDNA clone HU04P18
5-PRIME, mRNA sequence
Length = 593
Score = 482 bits (243), Expect = e-134
Identities = 402/455 (88%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 98 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 157
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||| ||||||||||||||||| |
Sbjct: 158 tccgccaaccttgggctccgcttcttcctcaagatctttttgatcgcgccgtcggcgagg 217
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 218 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaag 277
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggcc 444
|| |||||| ||||||||||||||||||||||||||||||| |||||| | || || |||
Sbjct: 278 acccacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagcc 337
Query: 445 gggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtac 504
|| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 338 ggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatac 397
Query: 505 ggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggag 564
||||| |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct: 398 ggcgtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggag 457
Query: 565 gcgctccccgctgacatgtggagcctcgagatgaagaaagcctgggccgaggcctacagc 624
||||| || |||||||||||| | | |||||||| ||| || |||| |||||| |||
Sbjct: 458 gcgcttccggctgacatgtgggggcccgagatgaggaacgcgtggggcgaggcatacgat 517
Query: 625 cagctggtggcggccatcaagcgggagatgaagcc 659
|| ||||| ||||||||||||| |||||||||||
Sbjct: 518 caactggtcgcggccatcaagcaagagatgaagcc 552
>gb|AL503784.1|AL503784 AL503784 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW03G17T 5', mRNA sequence
Length = 494
Score = 478 bits (241), Expect = e-133
Identities = 346/381 (90%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 103 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 162
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 163 tccgccaaccttgggctccgcttcttcctcaagatcttcgagatcgcgccgtcggcgagg 222
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 223 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaag 282
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggcc 444
|| |||||| ||||||||||||||||||||||||||||||| |||||| | || || |||
Sbjct: 283 acccacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagcc 342
Query: 445 gggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtac 504
|| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 343 ggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatac 402
Query: 505 ggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggag 564
||||| |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct: 403 ggcgtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggag 462
Query: 565 gcgctccccgctgacatgtgg 585
||||| || ||||||||||||
Sbjct: 463 gcgcttccggctgacatgtgg 483
>gb|CA003688.1|CA003688 HS15E03r HS Hordeum vulgare subsp. vulgare cDNA clone HS15E03
5-PRIME, mRNA sequence
Length = 486
Score = 466 bits (235), Expect = e-130
Identities = 340/375 (90%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 112 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 171
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 172 tccgccaaccttgggctccgcttcttcctcaagatcttcgagatcgcgccgtcggcgagg 231
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 232 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaag 291
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggcc 444
|| |||||| ||||||||||||||||||||||||||||||| |||||| | || || |||
Sbjct: 292 acccacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagcc 351
Query: 445 gggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtac 504
|| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 352 ggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatac 411
Query: 505 ggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggag 564
||||| |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct: 412 ggcgtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggag 471
Query: 565 gcgctccccgctgac 579
||||| || ||||||
Sbjct: 472 gcgcttccggctgac 486
>gb|CA017690.1|CA017690 HV05O24r HV Hordeum vulgare subsp. vulgare cDNA clone HV05O24
5-PRIME, mRNA sequence
Length = 500
Score = 464 bits (234), Expect = e-129
Identities = 339/374 (90%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 127 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 186
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 187 tccgccaaccttgggctccgcttcttcctcaagatcttcgagatcgcgccgtcggcgagg 246
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 247 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaag 306
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggcc 444
|| |||||| ||||||||||||||||||||||||||||||| |||||| | || || |||
Sbjct: 307 acccacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagcc 366
Query: 445 gggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtac 504
|| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 367 ggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatac 426
Query: 505 ggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggag 564
||||| |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct: 427 ggcgtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggag 486
Query: 565 gcgctccccgctga 578
||||| || |||||
Sbjct: 487 gcgcttccggctga 500
>gb|BQ465782.1|BQ465782 HU04K20r HU Hordeum vulgare subsp. vulgare cDNA clone HU04K20
5-PRIME, mRNA sequence
Length = 516
Score = 428 bits (216), Expect = e-118
Identities = 312/344 (90%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 171 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 230
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 231 tccgccaaccttgggctccgcttcttcctcaagatcttcgagatcgcgccgtcggcgagg 290
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 291 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaag 350
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggcc 444
|| |||||| ||||||||||||||||||||||||||||||| |||||| | || || |||
Sbjct: 351 acccacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagcc 410
Query: 445 gggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtac 504
|| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 411 ggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatac 470
Query: 505 ggcgtcgcagatggacacttcgaggtgacggggttcgcgctgct 548
||||| |||||||| ||||||||||||||| ||||||| |||||
Sbjct: 471 ggcgtggcagatggccacttcgaggtgacgcggttcgctctgct 514
>gb|BQ465502.1|BQ465502 HU03N05r HU Hordeum vulgare subsp. vulgare cDNA clone HU03N05
5-PRIME, mRNA sequence
Length = 431
Score = 406 bits (205), Expect = e-112
Identities = 295/325 (90%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 107 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 166
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 167 tccgccaaccttgggctccgcttcttcctcaagatcttcgagatcgcgccgtcggcgagg 226
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 227 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaag 286
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggcc 444
|| |||||| ||||||||||||||||||||||||||||||| |||||| | || || |||
Sbjct: 287 acccacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagcc 346
Query: 445 gggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtac 504
|| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |||
Sbjct: 347 ggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatac 406
Query: 505 ggcgtcgcagatggacacttcgagg 529
||||| |||||||| ||||||||||
Sbjct: 407 ggcgtggcagatggccacttcgagg 431
>gb|AL505599.1|AL505599 AL505599 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08P10V 5', mRNA sequence
Length = 686
Score = 391 bits (197), Expect = e-107
Identities = 320/361 (88%)
Strand = Plus / Plus
Query: 299 tcttcgagatcgcgccgtcggcgaagcagatgttctcgttcctgcgcgactccgacgtgc 358
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 294 tcttcgagatcgcgccgtcggcgaggcagatgttcccgttcctgcgcgactccgacgtgc 353
Query: 359 cgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgtcatgacctgcg 418
||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||
Sbjct: 354 cgctggagaccaaccccaagctcaagacccacgccgtgtccgtcttcgtcatgacctgcg 413
Query: 419 aggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagaccacgctcaaga 478
||||||| |||||| | || || ||||| ||| ||||||| ||||||||||| || ||||
Sbjct: 414 aggcggctgcgcagttgcggaaagccggcaagatcaccgtcagggagaccaccctgaaga 473
Query: 479 ggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcgaggtgacggggt 538
||||||||| ||||||||||| |||||||| |||||||| ||||||||||||||| |||
Sbjct: 474 ggctgggcggcacgcacttgaaatacggcgtggcagatggccacttcgaggtgacgcggt 533
Query: 539 tcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggagcctcgagatga 598
|||| ||||| |||||||||||||||||||| || |||||||||||| | | ||||||||
Sbjct: 534 tcgctctgctcgagacgatcaaggaggcgcttccggctgacatgtgggggcccgagatga 593
Query: 599 agaaagcctgggccgaggcctacagccagctggtggcggccatcaagcgggagatgaagc 658
||| || |||| |||||| ||| || ||||| ||||||||||||| ||||||||||
Sbjct: 594 ggaacgcgtggggcgaggcatacgatcaactggtcgcggccatcaagcaagagatgaagc 653
Query: 659 c 659
|
Sbjct: 654 c 654
Score = 121 bits (61), Expect = 4e-026
Identities = 85/93 (91%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 103 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 162
Query: 265 gccgccaacctgggcctccgcttcttcctcaag 297
|||||||||| || ||||||||||||||||||
Sbjct: 163 tccgccaaccttgggctccgcttcttcctcaag 195
>gb|AL504592.1|AL504592 AL504592 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05M03V 5', mRNA sequence
Length = 609
Score = 383 bits (193), Expect = e-105
Identities = 334/381 (87%), Gaps = 1/381 (0%)
Strand = Plus / Minus
Query: 280 ctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgttctcgttc 339
|||||||||||||||||| ||||| |||||||||||||||||| ||| |||||| |||||
Sbjct: 590 ctccgcttcttcctcaagatcttcnagatcgcgccgtcggcgaggcanatgttcccgttc 531
Query: 340 ctgcgcgactccgacgtgccgctggagaagaa-ccccaagctcaagacgcacgccatgtc 398
|||||||||||||||||||||||||||| || ||||||||||||||| |||||| ||||
Sbjct: 530 ctgcgcgactccgacgtgccgctggagaccaaaccccaagctcaagacccacgccgtgtc 471
Query: 399 cgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgt 458
||||||||||||||||||||||||||| |||||| | || || ||||| ||| |||||||
Sbjct: 470 cgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagccggcaagatcaccgt 411
Query: 459 gagggagaccacgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatgg 518
||||||||||| || || |||||||||| ||||||||||| |||||||| ||| ||||
Sbjct: 410 cagggagaccaccctgaanaggctgggcggcacgcacttgaaatacggcgtggcanatgg 351
Query: 519 acacttcgaggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctga 578
||||||||||||||| ||||||| ||||| |||||||||||||||||||| || |||||
Sbjct: 350 ccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggaggcgcttccggctga 291
Query: 579 catgtggagcctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggc 638
||||||| | | |||||||| ||| || |||| |||||| ||| || ||||| |||||
Sbjct: 290 catgtgggggcccgagatgaggaacgcgtggggcgaggcatacgatcaactggtcgcggc 231
Query: 639 catcaagcgggagatgaagcc 659
|||||||| |||||||||||
Sbjct: 230 catcaagcaagagatgaagcc 210
>gb|BQ663933.1|BQ663933 HU04K20u HU Hordeum vulgare subsp. vulgare cDNA clone HU04K20
3-PRIME, mRNA sequence
Length = 485
Score = 333 bits (168), Expect = 6e-090
Identities = 285/324 (87%)
Strand = Plus / Minus
Query: 336 gttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaagacgcacgccat 395
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
Sbjct: 485 gttcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaagacccacgccgt 426
Query: 396 gtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcac 455
|||||||||||||||||||||||||||||| |||||| | || || ||||| ||| ||||
Sbjct: 425 gtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagccggcaagatcac 366
Query: 456 cgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcaga 515
||| ||||||||||| || ||||||||||||| ||||||||||| |||||||| |||||
Sbjct: 365 cgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatacggcgtggcaga 306
Query: 516 tggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgc 575
||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||| || ||
Sbjct: 305 tggccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggaggcgcttccggc 246
Query: 576 tgacatgtggagcctcgagatgaagaaagcctgggccgaggcctacagccagctggtggc 635
|||||||||| | | |||||||| ||| || |||| |||||| ||| || ||||| ||
Sbjct: 245 tgacatgtgggggcccgagatgaggaacgcgtggggcgaggcatacgatcaactggtcgc 186
Query: 636 ggccatcaagcgggagatgaagcc 659
||||||||||| |||||||||||
Sbjct: 185 ggccatcaagcaagagatgaagcc 162
>gb|AL502861.1|AL502861 AL502861 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08P10u 3', mRNA sequence
Length = 549
Score = 325 bits (164), Expect = 1e-087
Identities = 291/332 (87%), Gaps = 1/332 (0%)
Strand = Plus / Minus
Query: 329 tgttctcgttcctgcgcgactcc-gacgtgccgctggagaagaaccccaagctcaagacg 387
||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 531 tgttcccgttcctgcgcgactcccgacgtgccgctggagaccaaccccaagctcaagacc 472
Query: 388 cacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggccggg 447
|||||| ||||||||||||||||||||||||||||||| |||||| | || || |||||
Sbjct: 471 cacgccgtgtccgtcttcgtcatgacctgcgaggcggctgcgcagttgcggaaagccggc 412
Query: 448 aaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtacggc 507
||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| ||||||
Sbjct: 411 aagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaatacggc 352
Query: 508 gtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaaggaggcg 567
|| |||||||| ||||||||||||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 351 gtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaaggaggcg 292
Query: 568 ctccccgctgacatgtggagcctcgagatgaagaaagcctgggccgaggcctacagccag 627
|| || |||||||||||| | | |||||||| ||| || |||| |||||| ||| ||
Sbjct: 291 cttccggctgacatgtgggggcccgagatgaggaacgcgtggggcgaggcatacgatcaa 232
Query: 628 ctggtggcggccatcaagcgggagatgaagcc 659
||||| ||||||||||||| |||||||||||
Sbjct: 231 ctggtcgcggccatcaagcaagagatgaagcc 200
>gb|BQ663745.1|BQ663745 HU03N05u HU Hordeum vulgare subsp. vulgare cDNA clone HU03N05
3-PRIME, mRNA sequence
Length = 478
Score = 309 bits (156), Expect = 8e-083
Identities = 273/312 (87%)
Strand = Plus / Minus
Query: 348 ctccgacgtgccgctggagaagaaccccaagctcaagacgcacgccatgtccgtcttcgt 407
|||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||
Sbjct: 478 ctccgacgtgccgctggagaccaaccccaagctcaagacccacgccgtgtccgtcttcgt 419
Query: 408 catgacctgcgaggcggcggcgcagctccgcaaggccgggaaggtcaccgtgagggagac 467
|||||||||||||||||| |||||| | || || ||||| ||| ||||||| ||||||||
Sbjct: 418 catgacctgcgaggcggctgcgcagttgcggaaagccggcaagatcaccgtcagggagac 359
Query: 468 cacgctcaagaggctgggcgccacgcacttgaggtacggcgtcgcagatggacacttcga 527
||| || ||||||||||||| ||||||||||| |||||||| |||||||| ||||||||
Sbjct: 358 caccctgaagaggctgggcggcacgcacttgaaatacggcgtggcagatggccacttcga 299
Query: 528 ggtgacggggttcgcgctgcttgagacgatcaaggaggcgctccccgctgacatgtggag 587
||||||| ||||||| ||||| |||||||||||||||||||| || |||||||||||| |
Sbjct: 298 ggtgacgcggttcgctctgctcgagacgatcaaggaggcgcttccggctgacatgtgggg 239
Query: 588 cctcgagatgaagaaagcctgggccgaggcctacagccagctggtggcggccatcaagcg 647
| |||||||| ||| || |||| |||||| ||| || ||||| |||||||||||||
Sbjct: 238 gcccgagatgaggaacgcgtggggcgaggcatacgatcaactggtcgcggccatcaagca 179
Query: 648 ggagatgaagcc 659
|||||||||||
Sbjct: 178 agagatgaagcc 167
>gb|BF622874.3|BF622874 HVSMEa0009M01f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009M01f, mRNA sequence
Length = 698
Score = 289 bits (146), Expect = 8e-077
Identities = 319/374 (85%), Gaps = 2/374 (0%)
Strand = Plus / Plus
Query: 213 cgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggacgccgccaa 272
||||||| ||||||||||| ||||||||| |||||| ||||||||||||| || ||||
Sbjct: 207 cgaggagaaggaggcgctgttgctcaagtaatgggccatcatgaagaaggattcctccaa 266
Query: 273 cctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaagcagatgtt 332
||| || |||||||| || |||||| ||||||| |||||||||||||||| ||| |||||
Sbjct: 267 ccttgggctccgcttgttactcaagatcttcgaaatcgcgccgtcggcgaggcatatgtt 326
Query: 333 ctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaagacgcacgc 392
| ||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 327 cccgtgcctgcgcgactccgacgtgccgctggagaccaaccccaagctcaagacccacgc 386
Query: 393 catgtccgtcttcgtcatgacctgcgaggcggcggcgcagctccgcaaggccgggaaggt 452
| |||||||||||||||||||||||||||||| || || | || || ||||| || |
Sbjct: 387 cgtgtccgtcttcgtcatgacctgcgaggcggttgcccatttgcggaaagccggcaaaat 446
Query: 453 caccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggtacggcgtcgc 512
|||||| ||||||||||| || || ||| |||||| | | ||||||| |||||||| ||
Sbjct: 447 caccgtaagggagaccaccctgaaaaggttgggcggcccccacttgaaatacggcgtggc 506
Query: 513 agatggacacttcgaggtgacggggttcgcgctgcttg-agacgatcaaggaggcgctcc 571
|||||| |||||| ||| |||| ||||||| ||||| | |||| |||||||||||||| |
Sbjct: 507 agatggccacttctaggggacgcggttcgctctgctcgaagac-atcaaggaggcgcttc 565
Query: 572 ccgctgacatgtgg 585
| | ||||||||||
Sbjct: 566 cggttgacatgtgg 579
>gb|BG299715.2|BG299715 HVSMEa0021I06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0021I06f, mRNA sequence
Length = 814
Score = 283 bits (143), Expect = 5e-075
Identities = 206/227 (90%)
Strand = Plus / Plus
Query: 205 gtcttcggcgaggagcaggaggcgctggtgctcaagtcgtgggccgtcatgaagaaggac 264
|||||| |||||||| |||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 201 gtcttcagcgaggagaaggaggcgctggtgctcaagtcatgggccatcatgaagaaggat 260
Query: 265 gccgccaacctgggcctccgcttcttcctcaaggtcttcgagatcgcgccgtcggcgaag 324
|||||||||| || |||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 261 tccgccaaccttgggctccgcttcttcctcaagatcttcgagatcgcgccgtcggcgagg 320
Query: 325 cagatgttctcgttcctgcgcgactccgacgtgccgctggagaagaaccccaagctcaag 384
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 321 cagatgttcccgttcctgcgcgactccgacgtgccgctggagaccaaccccaagctgaag 380
Query: 385 acgcacgccatgtccgtcttcgtcatgacctgcgaggcggcggcgca 431
|| |||||| |||||||||| | ||||||||| ||||||| |||||
Sbjct: 381 acccacgccgagtccgtcttcataatgacctgcaaggcggctgcgca 427
>gb|CA009955.1|CA009955 HT12D15u HT Hordeum vulgare subsp. vulgare cDNA clone HT12D15
3-PRIME, mRNA sequence
Length = 394
Score = 194 bits (98), Expect = 3e-048
Identities = 188/218 (86%)
Strand = Plus / Minus
Query: 442 gccgggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgagg 501
||||| ||| ||||||| ||||||||||| || ||||||||||||| |||||||||||
Sbjct: 379 gccggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaa 320
Query: 502 tacggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaag 561
|||||||| |||||||| ||||||||||||||| ||||||| ||||| ||||||||||||
Sbjct: 319 tacggcgtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaag 260
Query: 562 gaggcgctccccgctgacatgtggagcctcgagatgaagaaagcctgggccgaggcctac 621
|||||||| || |||||||||||| | | |||||||| ||| || |||| |||||| |||
Sbjct: 259 gaggcgcttccggctgacatgtgggggcccgagatgaggaacgcgtggggcgaggcatac 200
Query: 622 agccagctggtggcggccatcaagcgggagatgaagcc 659
|| ||||| ||||||||||||| |||||||||||
Sbjct: 199 gatcaactggtcgcggccatcaagcaagagatgaagcc 162
>gb|BI777666.2|BI777666 EBro08_SQ001_E09_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ001_E09 5', mRNA sequence
Length = 488
Score = 192 bits (97), Expect = 1e-047
Identities = 187/217 (86%)
Strand = Plus / Plus
Query: 443 ccgggaaggtcaccgtgagggagaccacgctcaagaggctgggcgccacgcacttgaggt 502
|||| ||| ||||||| ||||||||||| || ||||||||||||| ||||||||||| |
Sbjct: 16 ccggcaagatcaccgtcagggagaccaccctgaagaggctgggcggcacgcacttgaaat 75
Query: 503 acggcgtcgcagatggacacttcgaggtgacggggttcgcgctgcttgagacgatcaagg 562
||||||| |||||||| ||||||||||||||| ||||||| ||||| |||||||||||||
Sbjct: 76 acggcgtggcagatggccacttcgaggtgacgcggttcgctctgctcgagacgatcaagg 135
Query: 563 aggcgctccccgctgacatgtggagcctcgagatgaagaaagcctgggccgaggcctaca 622
||||||| || |||||||||||| | | |||||||| ||| || |||| |||||| |||
Sbjct: 136 aggcgcttccggctgacatgtgggggcccgagatgaggaacgcgtggggcgaggcatacg 195
Query: 623 gccagctggtggcggccatcaagcgggagatgaagcc 659
|| ||||| ||||||||||||| |||||||||||
Sbjct: 196 atcaactggtcgcggccatcaagcaagagatgaagcc 232
>gb|BG300640.1|BG300640 HVSMEb0017M11f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0017M11f, mRNA sequence
Length = 910
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 209 tcggcgaggagcaggaggcg 228
||||||||||||||||||||
Sbjct: 79 tcggcgaggagcaggaggcg 60
>gb|BF266458.3|BF266458 HV_CEa0015D02f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0015D02f, mRNA sequence
Length = 579
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 209 tcggcgaggagcaggaggcg 228
||||||||||||||||||||
Sbjct: 65 tcggcgaggagcaggaggcg 46
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 121,702
Number of Sequences: 312970
Number of extensions: 121702
Number of successful extensions: 35952
Number of sequences better than 0.5: 21
Number of HSP's better than 0.5 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35925
Number of HSP's gapped (non-prelim): 24
length of query: 885
length of database: 175,134,539
effective HSP length: 19
effective length of query: 866
effective length of database: 169,188,109
effective search space: 146516902394
effective search space used: 146516902394
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)