BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2943966.2.1
(599 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF630744.2|BF630744 HVSMEb0013N02f Hordeum vulgare seedl... 198 1e-049
gb|BF257218.2|BF257218 HVSMEf0012D15f Hordeum vulgare seedl... 198 1e-049
gb|BI957447.1|BI957447 HVSMEn0009J18f Hordeum vulgare rachi... 198 1e-049
gb|BI958437.1|BI958437 HVSMEn0014P16f Hordeum vulgare rachi... 198 1e-049
gb|BJ464739.1|BJ464739 BJ464739 K. Sato unpublished cDNA li... 198 1e-049
gb|BJ467041.1|BJ467041 BJ467041 K. Sato unpublished cDNA li... 198 1e-049
gb|BJ468176.1|BJ468176 BJ468176 K. Sato unpublished cDNA li... 198 1e-049
gb|CB878369.1|CB878369 HP08E22T HP Hordeum vulgare subsp. v... 198 1e-049
gb|CB878414.1|CB878414 HP08H09T HP Hordeum vulgare subsp. v... 198 1e-049
gb|BG300054.1|BG300054 HVSMEb0011D09f Hordeum vulgare seedl... 190 4e-047
gb|BE558675.1|BE558675 HV_CEb0020A16f Hordeum vulgare seedl... 190 4e-047
gb|BF254858.3|BF254858 HVSMEf0005D24f Hordeum vulgare seedl... 190 4e-047
gb|CA016838.1|CA016838 HV05N12u HV Hordeum vulgare subsp. v... 190 4e-047
gb|CA016746.1|CA016746 HV06J09u HV Hordeum vulgare subsp. v... 186 6e-046
gb|BI958752.1|BI958752 HVSMEn0016H12f Hordeum vulgare rachi... 176 5e-043
gb|BQ661977.1|BQ661977 HR01B07u HR Hordeum vulgare subsp. v... 176 5e-043
gb|BI958431.1|BI958431 HVSMEn0014O22f Hordeum vulgare rachi... 174 2e-042
gb|BI960058.1|BI960058 HVSMEn0023A12f Hordeum vulgare rachi... 174 2e-042
gb|BI779178.2|BI779178 EBro01_SQ003_D18_R root, 3 week, hyd... 157 5e-037
gb|CA006913.1|CA006913 HU06B07r HU Hordeum vulgare subsp. v... 149 1e-034
gb|BE213939.2|BE213939 HV_CEb0001L07f Hordeum vulgare seedl... 143 8e-033
gb|BF064997.3|BF064997 HV_CEb0022G03f Hordeum vulgare seedl... 143 8e-033
gb|BI957613.1|BI957613 HVSMEn0010F23f Hordeum vulgare rachi... 141 3e-032
gb|AL500625.1|AL500625 AL500625 Hordeum vulgare Barke roots... 139 1e-031
gb|AL503249.1|AL503249 AL503249 Hordeum vulgare Barke roots... 133 7e-030
gb|BF624054.2|BF624054 HVSMEa0009A08f Hordeum vulgare seedl... 133 7e-030
gb|BF626523.2|BF626523 HVSMEa0018K06f Hordeum vulgare seedl... 133 7e-030
gb|BE519617.1|BE519617 HV_CEb0016H01f Hordeum vulgare seedl... 133 7e-030
gb|BE519891.1|BE519891 HV_CEb0021J17f Hordeum vulgare seedl... 133 7e-030
gb|BE559087.1|BE559087 HV_CEb0022L14f Hordeum vulgare seedl... 133 7e-030
gb|BE214450.2|BE214450 HV_CEb0003H21f Hordeum vulgare seedl... 133 7e-030
gb|BE216025.2|BE216025 HV_CEb0009C13f Hordeum vulgare seedl... 133 7e-030
gb|BE216491.2|BE216491 HV_CEb0010K05f Hordeum vulgare seedl... 133 7e-030
gb|BI960166.1|BI960166 HVSMEn0023I06f Hordeum vulgare rachi... 133 7e-030
gb|BI960399.1|BI960399 HVSMEn0024H14f Hordeum vulgare rachi... 133 7e-030
gb|BM370604.2|BM370604 EBro08_SQ004_L13_R root, 3 week, dro... 133 7e-030
gb|BI959367.1|BI959367 HVSMEn0019G08f Hordeum vulgare rachi... 125 2e-027
gb|BI960119.1|BI960119 HVSMEn0023E19f Hordeum vulgare rachi... 125 2e-027
gb|BF259495.2|BF259495 HVSMEf0019H19f Hordeum vulgare seedl... 121 3e-026
gb|BI960118.1|BI960118 HVSMEn0023E18f Hordeum vulgare rachi... 121 3e-026
gb|BI960325.1|BI960325 HVSMEn0024D19f Hordeum vulgare rachi... 121 3e-026
gb|BM371957.2|BM371957 EBma08_SQ004_I06_R maternal, 28 DPA,... 121 3e-026
gb|BQ762267.1|BQ762267 EBro01_SQ005_F11_R root, 3 week, hyd... 121 3e-026
gb|BU979082.1|BU979082 HA15B18r HA Hordeum vulgare subsp. v... 121 3e-026
gb|BU979265.1|BU979265 HA15J22r HA Hordeum vulgare subsp. v... 121 3e-026
gb|BU998750.1|BU998750 HI12A22r HI Hordeum vulgare subsp. v... 121 3e-026
gb|CA030887.1|CA030887 HX08G19r HX Hordeum vulgare subsp. v... 121 3e-026
gb|BJ549094.1|BJ549094 BJ549094 K. Sato unpublished cDNA li... 121 3e-026
gb|CB859935.1|CB859935 HI12A22w HI Hordeum vulgare subsp. v... 121 3e-026
gb|CB859954.1|CB859954 HI12C04w HI Hordeum vulgare subsp. v... 121 3e-026
gb|BU977235.1|BU977235 HA11B05r HA Hordeum vulgare subsp. v... 119 1e-025
gb|AL504625.1|AL504625 AL504625 Hordeum vulgare Barke roots... 117 4e-025
gb|BF625981.2|BF625981 HVSMEa0015B13f Hordeum vulgare seedl... 117 4e-025
gb|BF065240.1|BF065240 HV_CEb0024I11f Hordeum vulgare seedl... 117 4e-025
gb|BF264389.2|BF264389 HV_CEa0009E18f Hordeum vulgare seedl... 117 4e-025
gb|AL500661.1|AL500661 AL500661 Hordeum vulgare Barke roots... 115 2e-024
gb|BI950057.1|BI950057 HVSMEl0018B24f Hordeum vulgare spike... 115 2e-024
gb|BI956791.1|BI956791 HVSMEn0005F21f Hordeum vulgare rachi... 115 2e-024
gb|BI960535.1|BI960535 HVSMEn0024P05f Hordeum vulgare rachi... 115 2e-024
gb|BU994270.1|BU994270 HM06G24r HM Hordeum vulgare subsp. v... 115 2e-024
gb|CB880402.1|CB880402 HM06G24w HM Hordeum vulgare subsp. v... 115 2e-024
gb|BI960120.1|BI960120 HVSMEn0023E20f Hordeum vulgare rachi... 113 7e-024
gb|BI957460.1|BI957460 HVSMEn0009L10f Hordeum vulgare rachi... 111 3e-023
gb|BI959561.1|BI959561 HVSMEn0020D05f Hordeum vulgare rachi... 111 3e-023
gb|BI957710.1|BI957710 HVSMEn0010N01f Hordeum vulgare rachi... 109 1e-022
gb|BQ460884.1|BQ460884 HE01O17r HE Hordeum vulgare subsp. v... 109 1e-022
gb|BI957644.1|BI957644 HVSMEn0010H17f Hordeum vulgare rachi... 107 4e-022
gb|BU998774.1|BU998774 HI12C04r HI Hordeum vulgare subsp. v... 105 2e-021
gb|BF627066.2|BF627066 HVSMEb0002G16f Hordeum vulgare seedl... 103 6e-021
gb|BF256079.2|BF256079 HVSMEf0008K20f Hordeum vulgare seedl... 103 6e-021
gb|BF260414.3|BF260414 HVSMEf0021O22f Hordeum vulgare seedl... 103 6e-021
gb|BG415448.2|BG415448 HVSMEk0006I14f Hordeum vulgare testa... 103 6e-021
gb|AV924692.1|AV924692 AV924692 K. Sato unpublished cDNA li... 103 6e-021
gb|BJ466490.1|BJ466490 BJ466490 K. Sato unpublished cDNA li... 103 6e-021
gb|BQ660910.1|BQ660910 HM01A23w HM Hordeum vulgare subsp. v... 103 6e-021
gb|BQ661501.1|BQ661501 HM03L08u HM Hordeum vulgare subsp. v... 103 6e-021
gb|BU977318.1|BU977318 HA11D12u HA Hordeum vulgare subsp. v... 103 6e-021
gb|CA017209.1|CA017209 HV14G11u HV Hordeum vulgare subsp. v... 103 6e-021
gb|CA020338.1|CA020338 HZ36A04r HZ Hordeum vulgare subsp. v... 103 6e-021
gb|CA016710.1|CA016710 HV06L01u HV Hordeum vulgare subsp. v... 101 3e-020
gb|BI958809.1|BI958809 HVSMEn0016L12f Hordeum vulgare rachi... 100 1e-019
gb|BI959235.1|BI959235 HVSMEn0018M17f Hordeum vulgare rachi... 100 1e-019
gb|BQ765794.1|BQ765794 EBro03_SQ008_N04_R root, 3 week, wat... 100 1e-019
gb|AV929789.1|AV929789 AV929789 K. Sato unpublished cDNA li... 98 4e-019
gb|BQ467961.1|BQ467961 HR01H17r HR Hordeum vulgare subsp. v... 98 4e-019
gb|CA021273.1|CA021273 HZ39J21r HZ Hordeum vulgare subsp. v... 98 4e-019
gb|BI959659.1|BI959659 HVSMEn0020K11f Hordeum vulgare rachi... 94 6e-018
gb|BI959396.1|BI959396 HVSMEn0019I08f Hordeum vulgare rachi... 92 2e-017
gb|BI960531.1|BI960531 HVSMEn0024O24f Hordeum vulgare rachi... 92 2e-017
gb|BQ468365.1|BQ468365 HM01A23T HM Hordeum vulgare subsp. v... 90 1e-016
gb|BQ662110.1|BQ662110 HR01J19u HR Hordeum vulgare subsp. v... 90 1e-016
gb|AL502956.1|AL502956 AL502956 Hordeum vulgare Barke roots... 88 4e-016
gb|BG299397.1|BG299397 HVSMEa0019M12f Hordeum vulgare seedl... 88 4e-016
gb|AL500139.1|AL500139 AL500139 Hordeum vulgare Barke etiol... 86 2e-015
gb|AL501924.1|AL501924 AL501924 Hordeum vulgare Barke roots... 86 2e-015
gb|AL503230.1|AL503230 AL503230 Hordeum vulgare Barke roots... 86 2e-015
gb|AJ431813.1|AJ431813 AJ431813 S00002 Hordeum vulgare subs... 86 2e-015
gb|BQ662142.1|BQ662142 HR01L16u HR Hordeum vulgare subsp. v... 86 2e-015
gb|CA017111.1|CA017111 HV14N14u HV Hordeum vulgare subsp. v... 86 2e-015
gb|CD663835.1|CD663835 UCRHV18_06dc01_b1 Drought-stressed D... 86 2e-015
gb|BF630555.2|BF630555 HVSMEb0011I21f Hordeum vulgare seedl... 84 6e-015
gb|BF261040.2|BF261040 HVSMEf0023J16f Hordeum vulgare seedl... 84 6e-015
gb|BI960085.1|BI960085 HVSMEn0023C11f Hordeum vulgare rachi... 84 6e-015
gb|CA016634.1|CA016634 HV08B21u HV Hordeum vulgare subsp. v... 84 6e-015
gb|AL501387.1|AL501387 AL501387 Hordeum vulgare Barke roots... 78 4e-013
gb|BF623901.2|BF623901 HVSMEa0007J15f Hordeum vulgare seedl... 78 4e-013
gb|BF629072.2|BF629072 HVSMEb0009M09f Hordeum vulgare seedl... 78 4e-013
gb|BG370011.2|BG370011 HVSMEi0026P07f Hordeum vulgare 20 DA... 78 4e-013
gb|BQ662084.1|BQ662084 HR01H17u HR Hordeum vulgare subsp. v... 74 6e-012
gb|BM100502.2|BM100502 EBma01_SQ005_G14_R maternal, 4 DPA, ... 72 2e-011
gb|BI952091.1|BI952091 HVSMEm0004J09f Hordeum vulgare green... 70 9e-011
gb|CB880406.1|CB880406 HM06H04w HM Hordeum vulgare subsp. v... 70 9e-011
gb|BQ763567.1|BQ763567 EBro02_SQ008_E22_R root, 3 week, hyd... 68 4e-010
gb|CA001451.1|CA001451 HS17P10u HS Hordeum vulgare subsp. v... 66 1e-009
gb|CA007423.1|CA007423 HU07O17r HU Hordeum vulgare subsp. v... 66 1e-009
gb|AL450922.1|AL450922 AL450922 Hordeum vulgare Barke etiol... 64 6e-009
gb|BI779395.2|BI779395 EBro01_SQ003_O04_R root, 3 week, hyd... 64 6e-009
gb|BF259949.2|BF259949 HVSMEf0020L06f Hordeum vulgare seedl... 60 9e-008
gb|BU977317.1|BU977317 HA11D12r HA Hordeum vulgare subsp. v... 60 9e-008
gb|CA025276.1|CA025276 HZ51K20r HZ Hordeum vulgare subsp. v... 60 9e-008
gb|BJ463542.1|BJ463542 BJ463542 K. Sato unpublished cDNA li... 58 3e-007
gb|BQ471953.1|BQ471953 HV03P16r HV Hordeum vulgare subsp. v... 58 3e-007
gb|CA018785.1|CA018785 HV09K09r HV Hordeum vulgare subsp. v... 58 3e-007
gb|CA020122.1|CA020122 HV14G11r HV Hordeum vulgare subsp. v... 58 3e-007
gb|BF619963.2|BF619963 HVSMEc0009N12f Hordeum vulgare seedl... 56 1e-006
gb|AL504534.1|AL504534 AL504534 Hordeum vulgare Barke roots... 54 5e-006
gb|AL509899.1|AL509899 AL509899 Hordeum vulgare Barke devel... 54 5e-006
gb|BI957501.1|BI957501 HVSMEn0009O03f Hordeum vulgare rachi... 54 5e-006
gb|BI957746.1|BI957746 HVSMEn0010P24f Hordeum vulgare rachi... 54 5e-006
gb|BI954074.1|BI954074 HVSMEm0016B12f Hordeum vulgare green... 50 8e-005
gb|BF065682.1|BF065682 HV_CEb0013G02f Hordeum vulgare seedl... 50 8e-005
gb|BF256995.2|BF256995 HVSMEf0011J05f Hordeum vulgare seedl... 48 3e-004
gb|AW982228.3|AW982228 HVSMEg0002G09f Hordeum vulgare pre-a... 48 3e-004
gb|BF624013.2|BF624013 HVSMEa0008J18f Hordeum vulgare seedl... 46 0.001
gb|BE215821.1|BE215821 HV_CEb0008J07f Hordeum vulgare seedl... 46 0.001
gb|BF065160.1|BF065160 HV_CEb0023K10f Hordeum vulgare seedl... 46 0.001
gb|BI959395.1|BI959395 HVSMEn0019I06f Hordeum vulgare rachi... 46 0.001
gb|BQ468035.1|BQ468035 HR01L16r HR Hordeum vulgare subsp. v... 46 0.001
gb|CA018264.1|CA018264 HV08B21r HV Hordeum vulgare subsp. v... 46 0.001
gb|CA019093.1|CA019093 HV10M04r HV Hordeum vulgare subsp. v... 46 0.001
gb|CA022538.1|CA022538 HZ43I18r HZ Hordeum vulgare subsp. v... 46 0.001
gb|CA023184.1|CA023184 HZ45H18r HZ Hordeum vulgare subsp. v... 46 0.001
gb|BJ549697.1|BJ549697 BJ549697 K. Sato unpublished cDNA li... 46 0.001
gb|AL501842.1|AL501842 AL501842 Hordeum vulgare Barke roots... 44 0.005
gb|AL505702.1|AL505702 AL505702 Hordeum vulgare Barke roots... 42 0.020
gb|AF474923.1| Hordeum vulgare subsp. vulgare chalcone isom... 42 0.020
gb|BI954845.1|BI954845 HVSMEm0020A17f Hordeum vulgare green... 40 0.081
gb|BI956599.1|BI956599 HVSMEn0004F14f Hordeum vulgare rachi... 40 0.081
gb|BE215236.1|BE215236 HV_CEb0006D22f Hordeum vulgare seedl... 40 0.081
gb|BF266009.2|BF266009 HV_CEa0013O16f Hordeum vulgare seedl... 40 0.081
gb|BE215905.3|BE215905 HV_CEb0008M22f Hordeum vulgare seedl... 40 0.081
gb|BM444060.1|BM444060 EBem09_SQ004_A16_R embryo, 1 Day ger... 40 0.081
gb|BQ468043.1|BQ468043 HR01M03r HR Hordeum vulgare subsp. v... 40 0.081
gb|BM443904.2|BM443904 EBem09_SQ001_P18_R embryo, 1 Day ger... 40 0.081
gb|CA017659.1|CA017659 HV05N12r HV Hordeum vulgare subsp. v... 40 0.081
gb|BI956671.1|BI956671 HVSMEn0004L02f Hordeum vulgare rachi... 38 0.32
gb|BI957989.1|BI957989 HVSMEn0012L03f Hordeum vulgare rachi... 38 0.32
>gb|BF630744.2|BF630744 HVSMEb0013N02f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0013N02f, mRNA sequence
Length = 756
Score = 198 bits (100), Expect = 1e-049
Identities = 229/272 (84%)
Strand = Plus / Minus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 554 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 495
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 494 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 435
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 434 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 375
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 374 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 315
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 314 tgggcttgtcggcgtccacgaacgcgaagtcg 283
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 261 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 202
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 201 gccatgccggc 191
>gb|BF257218.2|BF257218 HVSMEf0012D15f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0012D15f, mRNA sequence
Length = 830
Score = 198 bits (100), Expect = 1e-049
Identities = 229/272 (84%)
Strand = Plus / Minus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 327 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 268
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 267 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 208
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 207 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 148
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 147 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 88
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 87 tgggcttgtcggcgtccacgaacgcgaagtcg 56
>gb|BI957447.1|BI957447 HVSMEn0009J18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0009J18f, mRNA sequence
Length = 667
Score = 198 bits (100), Expect = 1e-049
Identities = 229/272 (84%)
Strand = Plus / Minus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 547 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 488
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 487 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 428
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 427 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 368
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 367 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 308
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 307 tgggcttgtcggcgtccacgaacgcgaagtcg 276
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 254 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 195
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 194 gccatgccggc 184
>gb|BI958437.1|BI958437 HVSMEn0014P16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014P16f, mRNA sequence
Length = 660
Score = 198 bits (100), Expect = 1e-049
Identities = 229/272 (84%)
Strand = Plus / Plus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 261 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 320
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 321 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 380
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 381 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 440
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 441 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 500
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 501 tgggcttgtcggcgtccacgaacgcgaagtcg 532
>gb|BJ464739.1|BJ464739 BJ464739 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37h18 5', mRNA sequence
Length = 573
Score = 198 bits (100), Expect = 1e-049
Identities = 229/272 (84%)
Strand = Plus / Minus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 365 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 306
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 305 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 246
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 245 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 186
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 185 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 126
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 125 tgggcttgtcggcgtccacgaacgcgaagtcg 94
>gb|BJ467041.1|BJ467041 BJ467041 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags35l16 3', mRNA sequence
Length = 705
Score = 198 bits (100), Expect = 1e-049
Identities = 229/272 (84%)
Strand = Plus / Plus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 235 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 294
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 295 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 354
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 355 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 414
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 415 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 474
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 475 tgggcttgtcggcgtccacgaacgcgaagtcg 506
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 528 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 587
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 588 gccatgccggc 598
>gb|BJ468176.1|BJ468176 BJ468176 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37h18 3', mRNA sequence
Length = 630
Score = 198 bits (100), Expect = 1e-049
Identities = 229/272 (84%)
Strand = Plus / Plus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 261 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 320
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 321 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 380
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 381 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 440
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 441 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 500
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 501 tgggcttgtcggcgtccacgaacgcgaagtcg 532
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 554 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 613
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 614 gccatgccggc 624
>gb|CB878369.1|CB878369 HP08E22T HP Hordeum vulgare subsp. vulgare cDNA clone HP08E22
5-PRIME, mRNA sequence
Length = 581
Score = 198 bits (100), Expect = 1e-049
Identities = 229/272 (84%)
Strand = Plus / Minus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 539 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 480
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 479 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 420
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 419 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 360
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 359 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 300
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 299 tgggcttgtcggcgtccacgaacgcgaagtcg 268
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 246 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 187
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 186 gccatgccggc 176
>gb|CB878414.1|CB878414 HP08H09T HP Hordeum vulgare subsp. vulgare cDNA clone HP08H09
5-PRIME, mRNA sequence
Length = 478
Score = 198 bits (100), Expect = 1e-049
Identities = 229/272 (84%)
Strand = Plus / Minus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 307 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 248
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 247 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 188
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 187 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 128
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 127 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 68
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 67 tgggcttgtcggcgtccacgaacgcgaagtcg 36
>gb|BG300054.1|BG300054 HVSMEb0011D09f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0011D09f, mRNA sequence
Length = 518
Score = 190 bits (96), Expect = 4e-047
Identities = 228/272 (83%)
Strand = Plus / Minus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| |||||||||| |||||||||||||||||| |||||||| | ||
Sbjct: 514 agacgacgcggcggcagatggtgacgcagtcggcgatggcgagctggcagacctcgatgc 455
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 454 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 395
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 394 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 335
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 334 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 275
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 274 tgggcttgtcggcgtccacgaacgcgaagtcg 243
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 221 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 162
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 161 gccatgccggc 151
>gb|BE558675.1|BE558675 HV_CEb0020A16f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0020A16f, mRNA sequence
Length = 816
Score = 190 bits (96), Expect = 4e-047
Identities = 228/272 (83%)
Strand = Plus / Plus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 277 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 336
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| || || | ||||||
Sbjct: 337 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggaaaagcgggtgtcga 396
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 397 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 456
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 457 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 516
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 517 tgggcttgtcggcgtccacgaacgcgaagtcg 548
>gb|BF254858.3|BF254858 HVSMEf0005D24f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0005D24f, mRNA sequence
Length = 541
Score = 190 bits (96), Expect = 4e-047
Identities = 228/272 (83%)
Strand = Plus / Minus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 272 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 213
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 212 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 153
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 152 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 93
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | ||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 92 agatgatggtgccgccgacgcgcaccacccgcagcagctgctcgtggtagcgcacgtagt 33
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 32 tgggcttgtcggcgtccacgaacgcgaagtcg 1
>gb|CA016838.1|CA016838 HV05N12u HV Hordeum vulgare subsp. vulgare cDNA clone HV05N12
3-PRIME, mRNA sequence
Length = 544
Score = 190 bits (96), Expect = 4e-047
Identities = 228/272 (83%)
Strand = Plus / Plus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 175 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 234
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| || || | ||||||
Sbjct: 235 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggaaaagcgggtgtcga 294
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 295 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 354
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 355 aaatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 414
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 415 tgggcttgtcggcgtccacgaacgcgaagtcg 446
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 468 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 527
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 528 gccatgccggc 538
>gb|CA016746.1|CA016746 HV06J09u HV Hordeum vulgare subsp. vulgare cDNA clone HV06J09
3-PRIME, mRNA sequence
Length = 496
Score = 186 bits (94), Expect = 6e-046
Identities = 220/262 (83%)
Strand = Plus / Plus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 232 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 291
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 292 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 351
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 352 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 411
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 412 aaatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 471
Query: 469 tgggcttgtcggcgtcgacgaa 490
|||||||||||||||| |||||
Sbjct: 472 tgggcttgtcggcgtccacgaa 493
>gb|BI958752.1|BI958752 HVSMEn0016H12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016H12f, mRNA sequence
Length = 676
Score = 176 bits (89), Expect = 5e-043
Identities = 218/261 (83%)
Strand = Plus / Minus
Query: 240 cggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtccgcg 299
||||| |||||||||| |||||||||||||||||| |||||||| | |||| ||| |||
Sbjct: 462 cggcagatggtgacgcggtcggcgatggcgagctggcagacctcgatgcgcgggtcggcg 403
Query: 300 gagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcgatgtccgacatg 359
| ||| ||||||||||||||| |||||| ||||| | |||||| ||| |||| |
Sbjct: 402 gcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcgaggtcggacaag 343
Query: 360 ggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgtacacgatggtg 419
||||| ||| |||| ||||| || |||| |||||||||||||||||| | |||||||
Sbjct: 342 ggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtg 283
Query: 420 ccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagttgggcttgtcg 479
||||||||||||||||| || ||||||||||||||||| | ||||||||||||||||
Sbjct: 282 ccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcg 223
Query: 480 gcgtcgacgaaggcgaagtcg 500
||||| ||||| |||||||||
Sbjct: 222 gcgtccacgaacgcgaagtcg 202
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 180 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 121
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 120 gccatgccggc 110
>gb|BQ661977.1|BQ661977 HR01B07u HR Hordeum vulgare subsp. vulgare cDNA clone HR01B07
3-PRIME, mRNA sequence
Length = 502
Score = 176 bits (89), Expect = 5e-043
Identities = 212/253 (83%)
Strand = Plus / Plus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 250 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 309
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 310 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 369
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 370 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 429
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 430 atatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 489
Query: 469 tgggcttgtcggc 481
|||||||||||||
Sbjct: 490 tgggcttgtcggc 502
>gb|BI958431.1|BI958431 HVSMEn0014O22f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0014O22f, mRNA sequence
Length = 629
Score = 174 bits (88), Expect = 2e-042
Identities = 226/272 (83%)
Strand = Plus / Minus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 383 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 324
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 323 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 264
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 263 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 204
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||| |||||
Sbjct: 203 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggccgcgcccgtagt 144
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 143 tgggcttgtcggcgtccacgaacgcgaagtcg 112
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 90 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 31
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 30 gccatgccggc 20
>gb|BI960058.1|BI960058 HVSMEn0023A12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023A12f, mRNA sequence
Length = 639
Score = 174 bits (88), Expect = 2e-042
Identities = 214/256 (83%)
Strand = Plus / Plus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 265 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 324
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| || || | ||||||
Sbjct: 325 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggaaaagcgggtgtcga 384
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 385 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 444
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | |||||||||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 445 agatgatggtgccgccgacgcgcaccagccgcagcagctgctcgtggtagcgcacgtagt 504
Query: 469 tgggcttgtcggcgtc 484
||||||||||||||||
Sbjct: 505 tgggcttgtcggcgtc 520
>gb|BI779178.2|BI779178 EBro01_SQ003_D18_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ003_D18 5', mRNA sequence
Length = 540
Score = 157 bits (79), Expect = 5e-037
Identities = 211/255 (82%)
Strand = Plus / Minus
Query: 246 atggtgacgccgtcggcgatggcgagctgacagacctcaacgcgctcgtccgcggagagg 305
||||||||||||||||||||||||||||| ||| |||| | |||| ||| |||| |||
Sbjct: 536 atggtgacgccgtcggcgatggcgagctggcagccctcgatgcgcgggtcggcggcgagc 477
Query: 306 cgaacgttgaggtccctgatggcggccgagaacctcctgtcgatgtccgacatgggcgtc 365
||||||||||||||| | || | ||||| | |||||| ||| |||| ||||||
Sbjct: 476 ttggcgttgaggtccctgaggccgccggagaagcgggtgtcgaggtcggacaagggcgtg 417
Query: 366 tccggtggcatggccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccg 425
||| |||| ||||| || |||| |||||||||||||||||| | |||||||||||||
Sbjct: 416 cccgccggcagcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccg 357
Query: 426 acgcgcaccaggcggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcg 485
||||||||||| || ||||||||||||||||| | |||||||||||||||||||||
Sbjct: 356 acgcgcaccagccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtcc 297
Query: 486 acgaaggcgaagtcg 500
||||| |||||||||
Sbjct: 296 acgaacgcgaagtcg 282
>gb|CA006913.1|CA006913 HU06B07r HU Hordeum vulgare subsp. vulgare cDNA clone HU06B07
5-PRIME, mRNA sequence
Length = 454
Score = 149 bits (75), Expect = 1e-034
Identities = 162/191 (84%)
Strand = Plus / Minus
Query: 310 cgttgaggtccctgatggcggccgagaacctcctgtcgatgtccgacatgggcgtctccg 369
||||||||||||||| |||||| ||||| | |||||| ||| |||| |||||| |||
Sbjct: 447 cgttgaggtccctgagggcggcggagaagcgggtgtcgaggtcggacaagggcgtgcccg 388
Query: 370 gtggcatggccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgc 429
|||| ||||| || |||| |||||||||||||||||| | |||||||||||||||||
Sbjct: 387 ccggcagcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgc 328
Query: 430 gcaccaggcggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacga 489
||||||| || ||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 327 gcaccagccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacga 268
Query: 490 aggcgaagtcg 500
| |||||||||
Sbjct: 267 acgcgaagtcg 257
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 235 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 176
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 175 gccatgccggc 165
>gb|BE213939.2|BE213939 HV_CEb0001L07f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0001L07f, mRNA sequence
Length = 960
Score = 143 bits (72), Expect = 8e-033
Identities = 222/272 (81%)
Strand = Plus / Plus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| |||| |||| |||||||| |||||||||||||||||||| || ||||| | ||
Sbjct: 277 agacgacgcgggggcagatggtgaccccgtcggcgatggcgagctggcaaacctcgatgc 336
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| || || | ||||||
Sbjct: 337 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggaaaagcgggtgtcga 396
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| ||| |||||||||||||
Sbjct: 397 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccaaagcgtgttgtcgt 456
Query: 409 acacgatggtgccgccgacgcgcaccaggcggagcagctgctcgtggtaattgaagtagt 468
| | ||||| ||||||||||||||||| || ||||||||||||||||| | |||||
Sbjct: 457 aaatgatggggccgccgacgcgcaccaaccgcagcagctgctcgtggtagcgcacgtagt 516
Query: 469 tgggcttgtcggcgtcgacgaaggcgaagtcg 500
|||||||||||||||| ||||| |||||||||
Sbjct: 517 tgggcttgtcggcgtccacgaacgcgaagtcg 548
Score = 42.1 bits (21), Expect = 0.020
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 555 gggccctcgcggaagtcgaccttgcccgccacgccgg 591
||||||||||||||||| |||||| ||||| |||||
Sbjct: 603 gggccctcgcggaagtccaccttgtgcgccatgccgg 639
>gb|BF064997.3|BF064997 HV_CEb0022G03f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022G03f, mRNA sequence
Length = 816
Score = 143 bits (72), Expect = 8e-033
Identities = 161/191 (84%)
Strand = Plus / Minus
Query: 310 cgttgaggtccctgatggcggccgagaacctcctgtcgatgtccgacatgggcgtctccg 369
||||||||||||||| |||||| ||||| | |||||| ||| |||| | |||| |||
Sbjct: 695 cgttgaggtccctgagggcggcggagaagcgggtgtcgaggtcggacaagngcgtgcccg 636
Query: 370 gtggcatggccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgc 429
|||| ||||| || |||| |||||||||||||||||| | |||||||||||||||||
Sbjct: 635 ccggcagcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgc 576
Query: 430 gcaccaggcggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacga 489
||||||| || ||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 575 gcaccagccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacga 516
Query: 490 aggcgaagtcg 500
| |||||||||
Sbjct: 515 acgcgaagtcg 505
Score = 77.8 bits (39), Expect = 4e-013
Identities = 51/55 (92%)
Strand = Plus / Minus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctc 283
|||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct: 776 agacgacgcggcggcagatggtaacgccgtcggcgatggcgagctggcagacctc 722
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 483 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 424
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 423 gccatgccggc 413
>gb|BI957613.1|BI957613 HVSMEn0010F23f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F23f, mRNA sequence
Length = 654
Score = 141 bits (71), Expect = 3e-032
Identities = 161/191 (84%)
Strand = Plus / Minus
Query: 310 cgttgaggtccctgatggcggccgagaacctcctgtcgatgtccgacatgggcgtctccg 369
||||||||||||||| ||||| ||||| | |||||| ||| |||| |||||| |||
Sbjct: 504 cgttgaggtccctgagcgcggcggagaagcgggtgtcgaggtcggacaagggcgtgcccg 445
Query: 370 gtggcatggccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgc 429
|||| ||||| || |||| |||||||||||||||||| | |||||||||||||||||
Sbjct: 444 ccggcagcgccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgc 385
Query: 430 gcaccaggcggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacga 489
||||||| || ||||||||||||||||| | ||||||||||||||||||||| ||||
Sbjct: 384 gcaccagccgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacga 325
Query: 490 aggcgaagtcg 500
| |||||||||
Sbjct: 324 acgcgaagtcg 314
>gb|AL500625.1|AL500625 AL500625 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01E24u 3', mRNA sequence
Length = 439
Score = 139 bits (70), Expect = 1e-031
Identities = 187/225 (83%), Gaps = 1/225 (0%)
Strand = Plus / Plus
Query: 229 agacgaggcggcggcaaatggtgacgccgtcggcgatggcgagctgacagacctcaacgc 288
|||||| ||||||||| ||||||||||||||||||||||||||||| |||||||| | ||
Sbjct: 215 agacgacgcggcggcagatggtgacgccgtcggcgatggcgagctggcagacctcgatgc 274
Query: 289 gctcgtccgcggagaggcgaacgttgaggtccctgatggcggccgagaacctcctgtcga 348
|| ||| |||| ||| ||||||||||||||| |||||| ||||| | ||||||
Sbjct: 275 gcgggtcggcggcgagcttggcgttgaggtccctgagggcggcggagaagcgggtgtcga 334
Query: 349 tgtccgacatgggcgtctccggtggcatggccacggtcccgcaccagagcgtgttgtcgt 408
||| |||| |||||| ||| |||| ||||| || |||| |||||||||||||||||
Sbjct: 335 ggtcggacaagggcgtgcccgccggcagcgccaccgtgccgccccagagcgtgttgtcgt 394
Query: 409 acacgatggtgcc-gccgacgcgcaccaggcggagcagctgctcg 452
| | ||||| ||| ||||||||||||||| || ||||||||||||
Sbjct: 395 agatgatggngcccgccgacgcgcaccagccgcagcagctgctcg 439
>gb|AL503249.1|AL503249 AL503249 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW01E24T 5', mRNA sequence
Length = 700
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 648 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 589
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 588 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 529
Query: 498 tcg 500
|||
Sbjct: 528 tcg 526
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 504 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 445
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 444 gccatgccggc 434
>gb|BF624054.2|BF624054 HVSMEa0009A08f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0009A08f, mRNA sequence
Length = 804
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 655 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 596
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 595 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 536
Query: 498 tcg 500
|||
Sbjct: 535 tcg 533
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 511 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 452
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 451 gccatgccggc 441
>gb|BF626523.2|BF626523 HVSMEa0018K06f Hordeum vulgare seedling shoot EST library
HVcDNA0001 (Cold stress) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEa0018K06f, mRNA sequence
Length = 749
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 640 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 581
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 580 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 521
Query: 498 tcg 500
|||
Sbjct: 520 tcg 518
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 496 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 437
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 436 gccatgccggc 426
>gb|BE519617.1|BE519617 HV_CEb0016H01f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0016H01f, mRNA sequence
Length = 705
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 655 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 596
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 595 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 536
Query: 498 tcg 500
|||
Sbjct: 535 tcg 533
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 511 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 452
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 451 gccatgccggc 441
>gb|BE519891.1|BE519891 HV_CEb0021J17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0021J17f, mRNA sequence
Length = 714
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 674 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 615
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 614 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 555
Query: 498 tcg 500
|||
Sbjct: 554 tcg 552
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 530 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 471
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 470 gccatgccggc 460
>gb|BE559087.1|BE559087 HV_CEb0022L14f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0022L14f, mRNA sequence
Length = 737
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 685 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 626
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 625 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 566
Query: 498 tcg 500
|||
Sbjct: 565 tcg 563
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 541 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 482
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 481 gccatgccggc 471
>gb|BE214450.2|BE214450 HV_CEb0003H21f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0003H21f, mRNA sequence
Length = 694
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 625 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 566
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 565 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 506
Query: 498 tcg 500
|||
Sbjct: 505 tcg 503
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 481 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 422
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 421 gccatgccggc 411
>gb|BE216025.2|BE216025 HV_CEb0009C13f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0009C13f, mRNA sequence
Length = 649
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 645 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 586
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 585 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 526
Query: 498 tcg 500
|||
Sbjct: 525 tcg 523
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 501 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 442
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 441 gccatgccggc 431
>gb|BE216491.2|BE216491 HV_CEb0010K05f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0010K05f, mRNA sequence
Length = 697
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 648 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 589
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 588 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 529
Query: 498 tcg 500
|||
Sbjct: 528 tcg 526
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 504 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 445
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 444 gccatgccggc 434
>gb|BI960166.1|BI960166 HVSMEn0023I06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023I06f, mRNA sequence
Length = 630
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 522 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 463
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 462 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 403
Query: 498 tcg 500
|||
Sbjct: 402 tcg 400
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 378 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 319
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 318 gccatgccggc 308
>gb|BI960399.1|BI960399 HVSMEn0024H14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024H14f, mRNA sequence
Length = 652
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 634 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 575
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 574 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 515
Query: 498 tcg 500
|||
Sbjct: 514 tcg 512
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 490 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 431
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 430 gccatgccggc 420
>gb|BM370604.2|BM370604 EBro08_SQ004_L13_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ004_L13 5', mRNA sequence
Length = 673
Score = 133 bits (67), Expect = 7e-030
Identities = 109/123 (88%)
Strand = Plus / Minus
Query: 378 gccacggtcccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccagg 437
||||| || |||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 646 gccaccgtgccgccccagagcgtgttgtcgtagatgatggtgccgccgacgcgcaccagc 587
Query: 438 cggagcagctgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaag 497
|| ||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||
Sbjct: 586 cgcagcagctgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaag 527
Query: 498 tcg 500
|||
Sbjct: 526 tcg 524
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 502 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 443
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 442 gccatgccggc 432
>gb|BI959367.1|BI959367 HVSMEn0019G08f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019G08f, mRNA sequence
Length = 639
Score = 125 bits (63), Expect = 2e-027
Identities = 101/114 (88%)
Strand = Plus / Minus
Query: 387 ccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccaggcggagcagc 446
|||| |||||||||||||||||| | ||||||||||| |||||||||||| || ||||||
Sbjct: 639 ccgccccagagcgtgttgtcgtagatgatggtgccgcngacgcgcaccagccgcagcagc 580
Query: 447 tgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcg 500
||||||||||| | ||||||||||||||||||||| ||||| |||||||||
Sbjct: 579 tgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaagtcg 526
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 504 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 445
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 444 gccatgccggc 434
>gb|BI960119.1|BI960119 HVSMEn0023E19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023E19f, mRNA sequence
Length = 647
Score = 125 bits (63), Expect = 2e-027
Identities = 101/114 (88%)
Strand = Plus / Minus
Query: 387 ccgcaccagagcgtgttgtcgtacacgatggtgccgccgacgcgcaccaggcggagcagc 446
|||| |||||||||||||||||| | ||||||||||| |||||||||||| || ||||||
Sbjct: 643 ccgccccagagcgtgttgtcgtagatgatggtgccgcngacgcgcaccagccgcagcagc 584
Query: 447 tgctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcg 500
||||||||||| | ||||||||||||||||||||| ||||| |||||||||
Sbjct: 583 tgctcgtggtagcgcacgtagttgggcttgtcggcgtccacgaacgcgaagtcg 530
Score = 46.1 bits (23), Expect = 0.001
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 522 tcggcgaggagctcgtccaggttgcccagcgcggggccctcgcggaagtcgaccttgccc 581
|||||||||||||| |||||| |||| ||| ||||||||||||||| |||||| |
Sbjct: 508 tcggcgaggagctcctccaggcgctccaggccggtgccctcgcggaagtccaccttgtgc 449
Query: 582 gccacgccggc 592
|||| ||||||
Sbjct: 448 gccatgccggc 438
>gb|BF259495.2|BF259495 HVSMEf0019H19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019H19f, mRNA sequence
Length = 759
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 385 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 326
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 325 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 266
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 265 agtcgatcttgtgcgccacgccggc 241
>gb|BI960118.1|BI960118 HVSMEn0023E18f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023E18f, mRNA sequence
Length = 637
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 323 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 264
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 263 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 204
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 203 agtcgatcttgtgcgccacgccggc 179
>gb|BI960325.1|BI960325 HVSMEn0024D19f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024D19f, mRNA sequence
Length = 591
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 163 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 104
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 103 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 44
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 43 agtcgatcttgtgcgccacgccggc 19
>gb|BM371957.2|BM371957 EBma08_SQ004_I06_R maternal, 28 DPA, no treatment, cv Optic, EBma08
Hordeum vulgare subsp. vulgare cDNA clone
EBma08_SQ004_I06 5', mRNA sequence
Length = 673
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 665 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 606
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 605 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 546
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 545 agtcgatcttgtgcgccacgccggc 521
>gb|BQ762267.1|BQ762267 EBro01_SQ005_F11_R root, 3 week, hydroponic grown, no treatment, cv
Optic, EBro01 Hordeum vulgare subsp. vulgare cDNA clone
EBro01_SQ005_F11 5', mRNA sequence
Length = 664
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 330 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 271
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 270 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 211
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 210 agtcgatcttgtgcgccacgccggc 186
>gb|BU979082.1|BU979082 HA15B18r HA Hordeum vulgare subsp. vulgare cDNA clone HA15B18
5-PRIME, mRNA sequence
Length = 593
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 173 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 114
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 113 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 54
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 53 agtcgatcttgtgcgccacgccggc 29
>gb|BU979265.1|BU979265 HA15J22r HA Hordeum vulgare subsp. vulgare cDNA clone HA15J22
5-PRIME, mRNA sequence
Length = 507
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 173 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 114
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 113 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 54
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 53 agtcgatcttgtgcgccacgccggc 29
>gb|BU998750.1|BU998750 HI12A22r HI Hordeum vulgare subsp. vulgare cDNA clone HI12A22
5-PRIME, mRNA sequence
Length = 670
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 668 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 609
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 608 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 549
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 548 agtcgatcttgtgcgccacgccggc 524
>gb|CA030887.1|CA030887 HX08G19r HX Hordeum vulgare subsp. vulgare cDNA clone HX08G19
5-PRIME, mRNA sequence
Length = 577
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Plus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 404 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 463
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 464 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 523
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 524 agtcgatcttgtgcgccacgccggc 548
>gb|BJ549094.1|BJ549094 BJ549094 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags28c08 5', mRNA sequence
Length = 509
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Minus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 342 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 283
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 282 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 223
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 222 agtcgatcttgtgcgccacgccggc 198
>gb|CB859935.1|CB859935 HI12A22w HI Hordeum vulgare subsp. vulgare cDNA clone HI12A22
3-PRIME, mRNA sequence
Length = 549
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Plus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 386 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 445
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 446 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 505
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 506 agtcgatcttgtgcgccacgccggc 530
>gb|CB859954.1|CB859954 HI12C04w HI Hordeum vulgare subsp. vulgare cDNA clone HI12C04
3-PRIME, mRNA sequence
Length = 552
Score = 121 bits (61), Expect = 3e-026
Identities = 124/145 (85%)
Strand = Plus / Plus
Query: 448 gctcgtggtaattgaagtagttgggcttgtcggcgtcgacgaaggcgaagtcgaaggcgc 507
|||||||||| |||| ||||||| |||||||||||| |||||| |||||||||||| ||
Sbjct: 384 gctcgtggtagttgaggtagttgtccttgtcggcgtccacgaagacgaagtcgaaggtgc 443
Query: 508 cgaggttggcctcgtcggcgaggagctcgtccaggttgcccagcgcggggccctcgcgga 567
|| ||||||||||||| ||||||| |||||||| | ||||| |||||||||||||
Sbjct: 444 cgtggttggcctcgtcctcgaggagggcgtccaggacggggagcgccgggccctcgcgga 503
Query: 568 agtcgaccttgcccgccacgccggc 592
|||||| |||| ||||||||||||
Sbjct: 504 agtcgatcttgtgcgccacgccggc 528
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,869
Number of Sequences: 312970
Number of extensions: 100869
Number of successful extensions: 33952
Number of sequences better than 0.5: 157
Number of HSP's better than 0.5 without gapping: 156
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33417
Number of HSP's gapped (non-prelim): 360
length of query: 599
length of database: 175,134,539
effective HSP length: 19
effective length of query: 580
effective length of database: 169,188,109
effective search space: 98129103220
effective search space used: 98129103220
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)