BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2437739.2.1
(574 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CA016117.1|CA016117 HV10I20u HV Hordeum vulgare subsp. v... 186 5e-046
gb|BU995937.1|BU995937 HM11N11r HM Hordeum vulgare subsp. v... 167 5e-040
gb|CB882092.1|CB882092 HM11N11w HM Hordeum vulgare subsp. v... 167 5e-040
gb|BQ468807.1|BQ468807 HM02G11r HM Hordeum vulgare subsp. v... 159 1e-037
gb|BQ661201.1|BQ661201 HM02G11u HM Hordeum vulgare subsp. v... 159 1e-037
gb|CB881387.1|CB881387 HM09K13w HM Hordeum vulgare subsp. v... 159 1e-037
gb|BQ660173.1|BQ660173 HI01E18w HI Hordeum vulgare subsp. v... 157 5e-037
gb|BQ660249.1|BQ660249 HI01K09w HI Hordeum vulgare subsp. v... 157 5e-037
gb|BQ663194.1|BQ663194 HU01E02w HU Hordeum vulgare subsp. v... 157 5e-037
gb|BU973151.1|BU973151 HB23O18r BC Hordeum vulgare subsp. v... 157 5e-037
gb|BU985657.1|BU985657 HF08D21r HF Hordeum vulgare subsp. v... 157 5e-037
gb|BU999923.1|BU999923 HS16P05u HS Hordeum vulgare subsp. v... 157 5e-037
gb|CA000004.1|CA000004 HS16F17u HS Hordeum vulgare subsp. v... 157 5e-037
gb|CA015249.1|CA015249 HT13L19r HT Hordeum vulgare subsp. v... 157 5e-037
gb|CA017215.1|CA017215 HV14C18u HV Hordeum vulgare subsp. v... 157 5e-037
gb|AF102868.1| Hordeum vulgare subsp. vulgare beta-D-glucan... 157 5e-037
gb|AL502756.1|AL502756 AL502756 Hordeum vulgare Barke roots... 155 2e-036
gb|AL510704.1|AL510704 AL510704 Hordeum vulgare Barke devel... 155 2e-036
gb|BF627275.3|BF627275 HVSMEb0004G19f Hordeum vulgare seedl... 155 2e-036
gb|BM376573.1|BM376573 EBem05_SQ002_J19_R embryo, 14 DPA, n... 155 2e-036
gb|AV909243.1|AV909243 AV909243 K. Sato unpublished cDNA li... 155 2e-036
gb|AV911128.1|AV911128 AV911128 K. Sato unpublished cDNA li... 155 2e-036
gb|AV918661.1|AV918661 AV918661 K. Sato unpublished cDNA li... 155 2e-036
gb|AV919570.1|AV919570 AV919570 K. Sato unpublished cDNA li... 155 2e-036
gb|AV920100.1|AV920100 AV920100 K. Sato unpublished cDNA li... 155 2e-036
gb|AV930613.1|AV930613 AV930613 K. Sato unpublished cDNA li... 155 2e-036
gb|BQ657885.1|BQ657885 HA06J20u HA Hordeum vulgare subsp. v... 155 2e-036
gb|BQ662134.1|BQ662134 HR01L02u HR Hordeum vulgare subsp. v... 155 2e-036
gb|BQ663930.1|BQ663930 HU04K15u HU Hordeum vulgare subsp. v... 155 2e-036
gb|BM374002.2|BM374002 EBma03_SQ003_F17_R maternal, 8 DPA, ... 155 2e-036
gb|BM101478.2|BM101478 EBpi01_SQ003_P14_R pistil, 1 DPA, no... 155 2e-036
gb|BU977332.1|BU977332 HA11D20u HA Hordeum vulgare subsp. v... 155 2e-036
gb|BU983489.1|BU983489 HA29O13r HA Hordeum vulgare subsp. v... 155 2e-036
gb|BU997464.1|BU997464 HI08B05r HI Hordeum vulgare subsp. v... 155 2e-036
gb|BJ467252.1|BJ467252 BJ467252 K. Sato unpublished cDNA li... 155 2e-036
gb|CB858339.1|CB858339 HI06K15w HI Hordeum vulgare subsp. v... 155 2e-036
gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydro... 155 2e-036
gb|AL501952.1|AL501952 AL501952 Hordeum vulgare Barke roots... 153 7e-036
gb|BM374115.1|BM374115 EBma03_SQ003_L03_R maternal, 8 DPA, ... 151 3e-035
gb|AV913362.1|AV913362 AV913362 K. Sato unpublished cDNA li... 151 3e-035
gb|BM098018.2|BM098018 EBpi03_SQ002_F03_R pistil, 4 DPA, no... 147 5e-034
gb|AL502558.1|AL502558 AL502558 Hordeum vulgare Barke roots... 143 7e-033
gb|BI956426.1|BI956426 HVSMEn0003E13f Hordeum vulgare rachi... 141 3e-032
gb|BU976239.1|BU976239 HA03G04u HA Hordeum vulgare subsp. v... 141 3e-032
gb|AL511981.1|AL511981 AL511981 Hordeum vulgare Barke devel... 137 4e-031
gb|AL512140.1|AL512140 AL512140 Hordeum vulgare Barke devel... 123 7e-027
gb|CA028903.1|CA028903 HZ63J10r HZ Hordeum vulgare subsp. v... 101 2e-020
gb|BQ469930.1|BQ469930 HX01E12T HX Hordeum vulgare subsp. v... 90 9e-017
gb|BU996833.1|BU996833 HM14O21r HM Hordeum vulgare subsp. v... 88 4e-016
gb|AL509470.1|AL509470 AL509470 Hordeum vulgare Barke devel... 86 1e-015
gb|BM098044.2|BM098044 EBpi03_SQ002_G06_R pistil, 4 DPA, no... 56 1e-006
gb|AV833400.1|AV833400 AV833400 K. Sato unpublished cDNA li... 48 3e-004
>gb|CA016117.1|CA016117 HV10I20u HV Hordeum vulgare subsp. vulgare cDNA clone HV10I20
3-PRIME, mRNA sequence
Length = 472
Score = 186 bits (94), Expect = 5e-046
Identities = 133/146 (91%)
Strand = Plus / Minus
Query: 166 cagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacg 225
|||||||||||||||| ||| ||||| |||||||| ||||| |||| |||||||||||||
Sbjct: 426 cagggcatcaccgacgcgctgttcggcgactacgggttcaccgggaagctgccgcggacg 367
Query: 226 tggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctg 285
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 366 tggttcaagtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctc 307
Query: 286 ttcccgctcgggttcgggctcaccac 311
||||||||||| | ||| ||||||||
Sbjct: 306 ttcccgctcggatacggcctcaccac 281
>gb|BU995937.1|BU995937 HM11N11r HM Hordeum vulgare subsp. vulgare cDNA clone HM11N11
5-PRIME, mRNA sequence
Length = 636
Score = 167 bits (84), Expect = 5e-040
Identities = 159/184 (86%)
Strand = Plus / Plus
Query: 128 acgcgctcgtggcggcctggctgccgggaagcgaaggccagggcatcaccgacgtgctct 187
|||||||||| || |||||||||||||| | ||| ||||| ||| || ||||||||||||
Sbjct: 373 acgcgctcgtcgccgcctggctgccgggcaccgagggccacggcgtcgccgacgtgctct 432
Query: 188 tcggggactacggcttcacggggacgctgccgcggacgtggttcaagtcggtggaccagc 247
|||||||| |||||||| | |||| ||||||||| |||||| ||| ||| || |||||||
Sbjct: 433 tcggggaccacggcttctccgggaagctgccgcgcacgtgggtcaggtccgtcgaccagc 492
Query: 248 tgccgatgaactacggcgacgagcactacgacccgctgttcccgctcgggttcgggctca 307
|||| ||||||||||||||| ||| |||||||||||| ||||| |||| ||||| ||||
Sbjct: 493 tgcccatgaactacggcgacaagctctacgacccgctcttccccttcggcttcggactca 552
Query: 308 ccac 311
||||
Sbjct: 553 ccac 556
>gb|CB882092.1|CB882092 HM11N11w HM Hordeum vulgare subsp. vulgare cDNA clone HM11N11
3-PRIME, mRNA sequence
Length = 655
Score = 167 bits (84), Expect = 5e-040
Identities = 159/184 (86%)
Strand = Plus / Minus
Query: 128 acgcgctcgtggcggcctggctgccgggaagcgaaggccagggcatcaccgacgtgctct 187
|||||||||| || |||||||||||||| | ||| ||||| ||| || ||||||||||||
Sbjct: 382 acgcgctcgtcgccgcctggctgccgggcaccgagggccacggcgtcgccgacgtgctct 323
Query: 188 tcggggactacggcttcacggggacgctgccgcggacgtggttcaagtcggtggaccagc 247
|||||||| |||||||| | |||| ||||||||| |||||| ||| ||| || |||||||
Sbjct: 322 tcggggaccacggcttctccgggaagctgccgcgcacgtgggtcaggtccgtcgaccagc 263
Query: 248 tgccgatgaactacggcgacgagcactacgacccgctgttcccgctcgggttcgggctca 307
|||| ||||||||||||||| ||| |||||||||||| ||||| |||| ||||| ||||
Sbjct: 262 tgcccatgaactacggcgacaagctctacgacccgctcttccccttcggcttcggactca 203
Query: 308 ccac 311
||||
Sbjct: 202 ccac 199
>gb|BQ468807.1|BQ468807 HM02G11r HM Hordeum vulgare subsp. vulgare cDNA clone HM02G11
5-PRIME, mRNA sequence
Length = 558
Score = 159 bits (80), Expect = 1e-037
Identities = 158/184 (85%)
Strand = Plus / Plus
Query: 128 acgcgctcgtggcggcctggctgccgggaagcgaaggccagggcatcaccgacgtgctct 187
|||||||||| || || ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 314 acgcgctcgtcgccgcgtggctgccgggcacggagggccacggcgtcgccgacgtgctct 373
Query: 188 tcggggactacggcttcacggggacgctgccgcggacgtggttcaagtcggtggaccagc 247
||||||||||||||||| | |||| |||||| ||||||||| ||| ||| ||||||||||
Sbjct: 374 tcggggactacggcttctcagggaagctgccccggacgtgggtcaggtccgtggaccagc 433
Query: 248 tgccgatgaactacggcgacgagcactacgacccgctgttcccgctcgggttcgggctca 307
|||| ||||||||||||||| ||| ||||||||||| ||||| |||| ||||| ||||
Sbjct: 434 tgcccatgaactacggcgacaagctatacgacccgctcttccccttcggcttcggcctca 493
Query: 308 ccac 311
||||
Sbjct: 494 ccac 497
>gb|BQ661201.1|BQ661201 HM02G11u HM Hordeum vulgare subsp. vulgare cDNA clone HM02G11
3-PRIME, mRNA sequence
Length = 552
Score = 159 bits (80), Expect = 1e-037
Identities = 158/184 (85%)
Strand = Plus / Minus
Query: 128 acgcgctcgtggcggcctggctgccgggaagcgaaggccagggcatcaccgacgtgctct 187
|||||||||| || || ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 411 acgcgctcgtcgccgcgtggctgccgggcacggagggccacggcgtcgccgacgtgctct 352
Query: 188 tcggggactacggcttcacggggacgctgccgcggacgtggttcaagtcggtggaccagc 247
||||||||||||||||| | |||| |||||| ||||||||| ||| ||| ||||||||||
Sbjct: 351 tcggggactacggcttctcagggaagctgccccggacgtgggtcaggtccgtggaccagc 292
Query: 248 tgccgatgaactacggcgacgagcactacgacccgctgttcccgctcgggttcgggctca 307
|||| ||||||||||||||| ||| ||||||||||| ||||| |||| ||||| ||||
Sbjct: 291 tgcccatgaactacggcgacaagctatacgacccgctcttccccttcggcttcggcctca 232
Query: 308 ccac 311
||||
Sbjct: 231 ccac 228
>gb|CB881387.1|CB881387 HM09K13w HM Hordeum vulgare subsp. vulgare cDNA clone HM09K13
3-PRIME, mRNA sequence
Length = 638
Score = 159 bits (80), Expect = 1e-037
Identities = 158/184 (85%)
Strand = Plus / Minus
Query: 128 acgcgctcgtggcggcctggctgccgggaagcgaaggccagggcatcaccgacgtgctct 187
|||||||||| || || ||||||||||| | || ||||| ||| || ||||||||||||
Sbjct: 333 acgcgctcgtcgccgcgtggctgccgggcacggagggccacggcgtcgccgacgtgctct 274
Query: 188 tcggggactacggcttcacggggacgctgccgcggacgtggttcaagtcggtggaccagc 247
||||||||||||||||| | |||| |||||| ||||||||| ||| ||| ||||||||||
Sbjct: 273 tcggggactacggcttctcagggaagctgccccggacgtgggtcaggtccgtggaccagc 214
Query: 248 tgccgatgaactacggcgacgagcactacgacccgctgttcccgctcgggttcgggctca 307
|||| ||||||||||||||| ||| ||||||||||| ||||| |||| ||||| ||||
Sbjct: 213 tgcccatgaactacggcgacaagctatacgacccgctcttccccttcggcttcggcctca 154
Query: 308 ccac 311
||||
Sbjct: 153 ccac 150
>gb|BQ660173.1|BQ660173 HI01E18w HI Hordeum vulgare subsp. vulgare cDNA clone HI01E18
3-PRIME, mRNA sequence
Length = 423
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||||||||||||
Sbjct: 385 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 326
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgc 292
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||
Sbjct: 325 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 266
Query: 293 tcgggttcgggctcaccac 311
|||| | ||| ||||||||
Sbjct: 265 tcggatacggcctcaccac 247
>gb|BQ660249.1|BQ660249 HI01K09w HI Hordeum vulgare subsp. vulgare cDNA clone HI01K09
3-PRIME, mRNA sequence
Length = 417
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||||||||||||
Sbjct: 385 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 326
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgc 292
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||
Sbjct: 325 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 266
Query: 293 tcgggttcgggctcaccac 311
|||| | ||| ||||||||
Sbjct: 265 tcggatacggcctcaccac 247
>gb|BQ663194.1|BQ663194 HU01E02w HU Hordeum vulgare subsp. vulgare cDNA clone HU01E02
3-PRIME, mRNA sequence
Length = 427
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||||||||||||
Sbjct: 384 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 325
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgc 292
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||
Sbjct: 324 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 265
Query: 293 tcgggttcgggctcaccac 311
|||| | ||| ||||||||
Sbjct: 264 tcggatacggcctcaccac 246
>gb|BU973151.1|BU973151 HB23O18r BC Hordeum vulgare subsp. vulgare cDNA clone HB23O18
5-PRIME, mRNA sequence
Length = 515
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Plus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||||||||||||
Sbjct: 250 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 309
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgc 292
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||
Sbjct: 310 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 369
Query: 293 tcgggttcgggctcaccac 311
|||| | ||| ||||||||
Sbjct: 370 tcggatacggcctcaccac 388
Score = 101 bits (51), Expect = 2e-020
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 5 tgaacctgacgatcccggagcccgggccgagcaccatccagacggtgtgcggcgccgtgc 64
|||||||||| |||||||||||||| | ||||||| | ||| |||||||||||| |||||
Sbjct: 82 tgaacctgaccatcccggagcccggcctgagcaccgtgcaggcggtgtgcggcggcgtgc 141
Query: 65 cctgcgcgaccgtgctcatcagcggccgccccgtggtgatacagccg 111
|||||||| |||||||||||||| || ||||||||| | ||||||
Sbjct: 142 ggtgcgcgacggtgctcatcagcgggcggcccgtggtggtgcagccg 188
>gb|BU985657.1|BU985657 HF08D21r HF Hordeum vulgare subsp. vulgare cDNA clone HF08D21
5-PRIME, mRNA sequence
Length = 412
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Plus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||||||||||||
Sbjct: 28 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 87
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgc 292
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||
Sbjct: 88 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 147
Query: 293 tcgggttcgggctcaccac 311
|||| | ||| ||||||||
Sbjct: 148 tcggatacggcctcaccac 166
>gb|BU999923.1|BU999923 HS16P05u HS Hordeum vulgare subsp. vulgare cDNA clone HS16P05
3-PRIME, mRNA sequence
Length = 446
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||||||||||||
Sbjct: 385 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 326
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgc 292
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||
Sbjct: 325 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 266
Query: 293 tcgggttcgggctcaccac 311
|||| | ||| ||||||||
Sbjct: 265 tcggatacggcctcaccac 247
>gb|CA000004.1|CA000004 HS16F17u HS Hordeum vulgare subsp. vulgare cDNA clone HS16F17
3-PRIME, mRNA sequence
Length = 465
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||||||||||||
Sbjct: 385 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 326
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgc 292
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||
Sbjct: 325 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 266
Query: 293 tcgggttcgggctcaccac 311
|||| | ||| ||||||||
Sbjct: 265 tcggatacggcctcaccac 247
>gb|CA015249.1|CA015249 HT13L19r HT Hordeum vulgare subsp. vulgare cDNA clone HT13L19
5-PRIME, mRNA sequence
Length = 570
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Plus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||||||||||||
Sbjct: 363 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 422
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgc 292
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||
Sbjct: 423 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 482
Query: 293 tcgggttcgggctcaccac 311
|||| | ||| ||||||||
Sbjct: 483 tcggatacggcctcaccac 501
Score = 101 bits (51), Expect = 2e-020
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 5 tgaacctgacgatcccggagcccgggccgagcaccatccagacggtgtgcggcgccgtgc 64
|||||||||| |||||||||||||| | ||||||| | ||| |||||||||||| |||||
Sbjct: 195 tgaacctgaccatcccggagcccggcctgagcaccgtgcaggcggtgtgcggcggcgtgc 254
Query: 65 cctgcgcgaccgtgctcatcagcggccgccccgtggtgatacagccg 111
|||||||| |||||||||||||| || ||||||||| | ||||||
Sbjct: 255 ggtgcgcgacggtgctcatcagcgggcggcccgtggtggtgcagccg 301
>gb|CA017215.1|CA017215 HV14C18u HV Hordeum vulgare subsp. vulgare cDNA clone HV14C18
3-PRIME, mRNA sequence
Length = 391
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Minus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||||||||||||
Sbjct: 386 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 327
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgc 292
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||
Sbjct: 326 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 267
Query: 293 tcgggttcgggctcaccac 311
|||| | ||| ||||||||
Sbjct: 266 tcggatacggcctcaccac 248
>gb|AF102868.1| Hordeum vulgare subsp. vulgare beta-D-glucan exohydrolase isoenzyme
ExoI mRNA, complete cds
Length = 2161
Score = 157 bits (79), Expect = 5e-037
Identities = 124/139 (89%)
Strand = Plus / Plus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||||||||||||||||||||
Sbjct: 1752 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttca 1811
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgc 292
|||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||
Sbjct: 1812 agtcggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggc 1871
Query: 293 tcgggttcgggctcaccac 311
|||| | ||| ||||||||
Sbjct: 1872 tcggatacggcctcaccac 1890
Score = 101 bits (51), Expect = 2e-020
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 5 tgaacctgacgatcccggagcccgggccgagcaccatccagacggtgtgcggcgccgtgc 64
|||||||||| |||||||||||||| | ||||||| | ||| |||||||||||| |||||
Sbjct: 1584 tgaacctgaccatcccggagcccggcctgagcaccgtgcaggcggtgtgcggcggcgtgc 1643
Query: 65 cctgcgcgaccgtgctcatcagcggccgccccgtggtgatacagccg 111
|||||||| |||||||||||||| || ||||||||| | ||||||
Sbjct: 1644 ggtgcgcgacggtgctcatcagcgggcggcccgtggtggtgcagccg 1690
>gb|AL502756.1|AL502756 AL502756 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW08K03u 3', mRNA sequence
Length = 552
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 358 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 299
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 298 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 239
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 238 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 197
>gb|AL510704.1|AL510704 AL510704 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY05L24u 3',
mRNA sequence
Length = 496
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 377 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 318
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 317 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 258
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 257 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 216
>gb|BF627275.3|BF627275 HVSMEb0004G19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0004G19f, mRNA sequence
Length = 636
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Plus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 330 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 389
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 390 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 449
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 450 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 491
>gb|BM376573.1|BM376573 EBem05_SQ002_J19_R embryo, 14 DPA, no treatment, cv Optic, EBem05
Hordeum vulgare subsp. vulgare cDNA clone
EBem05_SQ002_J19 5', mRNA sequence
Length = 370
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Plus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 85 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 144
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 145 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 204
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 205 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 246
>gb|AV909243.1|AV909243 AV909243 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12b24 5', mRNA sequence
Length = 655
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Plus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 361 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 420
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 421 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 480
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 481 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 522
>gb|AV911128.1|AV911128 AV911128 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak12b24 3', mRNA sequence
Length = 609
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 274 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 215
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 214 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 155
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 154 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 113
>gb|AV918661.1|AV918661 AV918661 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m18 3', mRNA sequence
Length = 663
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 243 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 184
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 183 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 124
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 123 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 82
>gb|AV919570.1|AV919570 AV919570 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6k08 3', mRNA sequence
Length = 696
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 271 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 212
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 211 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 152
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 151 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 110
>gb|AV920100.1|AV920100 AV920100 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags9e08 3', mRNA sequence
Length = 682
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 271 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 212
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 211 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 152
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 151 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 110
>gb|AV930613.1|AV930613 AV930613 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd24f16 3', mRNA sequence
Length = 599
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 236 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 177
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 176 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 117
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 116 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 75
>gb|BQ657885.1|BQ657885 HA06J20u HA Hordeum vulgare subsp. vulgare cDNA clone HA06J20
3-PRIME, mRNA sequence
Length = 454
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 280 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 221
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 220 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 161
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 160 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 119
>gb|BQ662134.1|BQ662134 HR01L02u HR Hordeum vulgare subsp. vulgare cDNA clone HR01L02
3-PRIME, mRNA sequence
Length = 457
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 285 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 226
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 225 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 166
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 165 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 124
>gb|BQ663930.1|BQ663930 HU04K15u HU Hordeum vulgare subsp. vulgare cDNA clone HU04K15
3-PRIME, mRNA sequence
Length = 582
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 285 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 226
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 225 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 166
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 165 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 124
>gb|BM374002.2|BM374002 EBma03_SQ003_F17_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_F17 5', mRNA sequence
Length = 533
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Plus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 239 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 298
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 299 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 358
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 359 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 400
>gb|BM101478.2|BM101478 EBpi01_SQ003_P14_R pistil, 1 DPA, no treatment, cv Optic, EBpi01
Hordeum vulgare subsp. vulgare cDNA clone
EBpi01_SQ003_P14 5', mRNA sequence
Length = 411
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Plus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 105 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 164
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 165 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 224
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 225 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 266
>gb|BU977332.1|BU977332 HA11D20u HA Hordeum vulgare subsp. vulgare cDNA clone HA11D20
3-PRIME, mRNA sequence
Length = 439
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 285 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 226
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 225 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 166
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 165 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 124
>gb|BU983489.1|BU983489 HA29O13r HA Hordeum vulgare subsp. vulgare cDNA clone HA29O13
5-PRIME, mRNA sequence
Length = 447
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Plus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 210 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 269
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 270 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 329
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 330 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 371
>gb|BU997464.1|BU997464 HI08B05r HI Hordeum vulgare subsp. vulgare cDNA clone HI08B05
5-PRIME, mRNA sequence
Length = 594
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 309 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 250
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 249 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 190
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 189 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 148
>gb|BJ467252.1|BJ467252 BJ467252 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags26e21 3', mRNA sequence
Length = 522
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 265 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 206
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 205 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 146
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 145 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 104
>gb|CB858339.1|CB858339 HI06K15w HI Hordeum vulgare subsp. vulgare cDNA clone HI06K15
3-PRIME, mRNA sequence
Length = 542
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 285 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 226
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 225 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 166
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 165 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 124
>gb|U46003.1|HVU46003 Hordeum vulgare beta-D-glucan exohydrolase, isoenzyme ExoII, mRNA,
complete cds
Length = 2105
Score = 155 bits (78), Expect = 2e-036
Identities = 141/162 (87%)
Strand = Plus / Plus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 1736 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 1795
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 1796 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 1855
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 1856 ctcttccccttcgggttcggcctcaccaccgaggccaagaag 1897
>gb|AL501952.1|AL501952 AL501952 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW05P08u 3', mRNA sequence
Length = 501
Score = 153 bits (77), Expect = 7e-036
Identities = 131/149 (87%)
Strand = Plus / Minus
Query: 176 ccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttcaagt 235
|||||||||| ||||| |||||||| ||| | |||| |||| ||||||||||||||||||
Sbjct: 424 ccgacgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagt 365
Query: 236 cggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgctcg 295
||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||
Sbjct: 364 cggcggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcg 305
Query: 296 ggttcgggctcaccacacagggcaagaag 324
||||||| |||||||| ||| |||||||
Sbjct: 304 ggttcggcctcaccaccgaggccaagaag 276
>gb|BM374115.1|BM374115 EBma03_SQ003_L03_R maternal, 8 DPA, no treatment, cv Optic, EBma03
Hordeum vulgare subsp. vulgare cDNA clone
EBma03_SQ003_L03 5', mRNA sequence
Length = 386
Score = 151 bits (76), Expect = 3e-035
Identities = 121/136 (88%)
Strand = Plus / Plus
Query: 176 ccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttcaagt 235
|||||| ||| ||||| |||| ||| ||||| |||| |||||||||||||||||||||||
Sbjct: 1 ccgacgcgctgttcggcgacttcgggttcaccgggaggctgccgcggacgtggttcaagt 60
Query: 236 cggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgctcg 295
||||||||||||||||||||||| |||||||| ||||||||||||||| |||| |||||
Sbjct: 61 cggtggaccagctgccgatgaacgtcggcgacgcgcactacgacccgctcttccggctcg 120
Query: 296 ggttcgggctcaccac 311
| | ||| ||||||||
Sbjct: 121 gatacggcctcaccac 136
>gb|AV913362.1|AV913362 AV913362 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags21m18 5', mRNA sequence
Length = 585
Score = 151 bits (76), Expect = 3e-035
Identities = 121/136 (88%)
Strand = Plus / Plus
Query: 176 ccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttcaagt 235
|||||||||| ||||| |||||||| ||| | |||| |||| ||||||||||||||||||
Sbjct: 447 ccgacgtgctgttcggcgactacgggttctccgggaagctggcgcggacgtggttcaagt 506
Query: 236 cggtggaccagctgccgatgaactacggcgacgagcactacgacccgctgttcccgctcg 295
||| ||||||||||||||||||| ||||||| |||||||||||||||| ||||| |||
Sbjct: 507 cggcggaccagctgccgatgaacgtcggcgacaagcactacgacccgctcttccccttcg 566
Query: 296 ggttcgggctcaccac 311
||||||| ||||||||
Sbjct: 567 ggttcggcctcaccac 582
>gb|BM098018.2|BM098018 EBpi03_SQ002_F03_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_F03 5', mRNA sequence
Length = 523
Score = 147 bits (74), Expect = 5e-034
Identities = 141/162 (87%), Gaps = 1/162 (0%)
Strand = Plus / Plus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 240 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 299
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 300 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 359
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 360 ctcttccc-ttcgggttcggcctcaccaccgaggccaagaag 400
>gb|AL502558.1|AL502558 AL502558 Hordeum vulgare Barke roots Hordeum vulgare subsp. vulgare
cDNA clone HW07P13u 3', mRNA sequence
Length = 364
Score = 143 bits (72), Expect = 7e-033
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 320 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 261
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 260 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 201
Query: 283 ctgttcccgctcgggttcgg 302
|| ||||| ||||||||||
Sbjct: 200 ctcttccccttcgggttcgg 181
>gb|BI956426.1|BI956426 HVSMEn0003E13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0003E13f, mRNA sequence
Length = 453
Score = 141 bits (71), Expect = 3e-032
Identities = 139/162 (85%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| ||| | |||| |||| |||||
Sbjct: 315 ggccagggcgtggccgacgtgctgttcggcgactacgggttctccgggaagctggcgcgg 256
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||||||
Sbjct: 255 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcantacgacccg 196
Query: 283 ctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|| ||||| ||||||| || |||||||| ||| |||||||
Sbjct: 195 ctcttccccttcgggttgggcctcaccaccgaggccaagaag 154
>gb|BU976239.1|BU976239 HA03G04u HA Hordeum vulgare subsp. vulgare cDNA clone HA03G04
3-PRIME, mRNA sequence
Length = 456
Score = 141 bits (71), Expect = 3e-032
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 163 ggccagggcatcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcgg 222
||||||||| | |||||||||| ||||| |||||||| || | |||| |||| |||||
Sbjct: 284 ggccagggcgtggccgacgtgctgttcggcgactacgggttttccgggaagctggcgcgg 225
Query: 223 acgtggttcaagtcggtggaccagctgccgatgaactacggcgacgagcactacgacccg 282
|||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||
Sbjct: 224 acgtggttcaagtcggcggaccagctgccgatgaacgtcggcgacaagcactacgacccg 165
Query: 283 ctgttcccgctcgggttcgggctcacc 309
|| ||||| |||||||||| ||||||
Sbjct: 164 cttttccccttcgggttcggcctcacc 138
>gb|AL511981.1|AL511981 AL511981 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY09P15u 3',
mRNA sequence
Length = 527
Score = 137 bits (69), Expect = 4e-031
Identities = 123/140 (87%), Gaps = 1/140 (0%)
Strand = Plus / Minus
Query: 173 tcaccgacgtgctcttcggggactacggcttcacggggacgctgccgcggacgtggttca 232
||||||||| ||| ||||| |||| ||| ||||| |||| ||| ||||||||||||||||
Sbjct: 404 tcaccgacgcgctgttcggcgacttcgggttcaccgggaggctnccgcggacgtggttca 345
Query: 233 agtcggtggaccagctgccgatgaactacggcgacgagca-ctacgacccgctgttcccg 291
|||||||||||||||||||||||||| |||||||| ||| |||||||||||| |||| |
Sbjct: 344 agtcggtggaccagctgccgatgaacgtcggcgacgcgcacctacgacccgctcttccgg 285
Query: 292 ctcgggttcgggctcaccac 311
||||| | ||| ||||||||
Sbjct: 284 ctcggatacggcctcaccac 265
>gb|AL512140.1|AL512140 AL512140 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY10I14u 3',
mRNA sequence
Length = 326
Score = 123 bits (62), Expect = 7e-027
Identities = 103/117 (88%)
Strand = Plus / Minus
Query: 208 gggacgctgccgcggacgtggttcaagtcggtggaccagctgccgatgaactacggcgac 267
|||| |||| ||||||||||||||||||||| ||||||||||||||| ||| |||||||
Sbjct: 315 gggaagctggcgcggacgtggttcaagtcggcggaccagctgccgatnaacgtcggcgac 256
Query: 268 gagcactacgacccgctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
|||||||||||||||| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 255 aagcactacgacccgctcttccccttcgggttcggcctcaccaccgaggccaagaag 199
>gb|CA028903.1|CA028903 HZ63J10r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ63J10
5-PRIME, mRNA sequence
Length = 361
Score = 101 bits (51), Expect = 2e-020
Identities = 93/107 (86%)
Strand = Plus / Plus
Query: 5 tgaacctgacgatcccggagcccgggccgagcaccatccagacggtgtgcggcgccgtgc 64
|||||||||| |||||||||||||| | ||||||| | ||| |||||||||||| |||||
Sbjct: 162 tgaacctgaccatcccggagcccggcctgagcaccgtgcaggcggtgtgcggcggcgtgc 221
Query: 65 cctgcgcgaccgtgctcatcagcggccgccccgtggtgatacagccg 111
|||||||| |||||||||||||| || ||||||||| | ||||||
Sbjct: 222 ggtgcgcgacggtgctcatcagcgggcggcccgtggtggtgcagccg 268
>gb|BQ469930.1|BQ469930 HX01E12T HX Hordeum vulgare subsp. vulgare cDNA clone HX01E12
5-PRIME, mRNA sequence
Length = 462
Score = 89.7 bits (45), Expect = 9e-017
Identities = 75/85 (88%)
Strand = Plus / Plus
Query: 5 tgaacctgacgatcccggagcccgggccgagcaccatccagacggtgtgcggcgccgtgc 64
|||||||||| |||||||||||||| | ||||||| | ||| |||||||||||| |||||
Sbjct: 326 tgaacctgaccatcccggagcccggcctgagcaccgtgcaggcggtgtgcggcggcgtgc 385
Query: 65 cctgcgcgaccgtgctcatcagcgg 89
|||||||| ||||||||||||||
Sbjct: 386 ggtgcgcgacggtgctcatcagcgg 410
>gb|BU996833.1|BU996833 HM14O21r HM Hordeum vulgare subsp. vulgare cDNA clone HM14O21
5-PRIME, mRNA sequence
Length = 532
Score = 87.7 bits (44), Expect = 4e-016
Identities = 74/84 (88%)
Strand = Plus / Plus
Query: 5 tgaacctgacgatcccggagcccgggccgagcaccatccagacggtgtgcggcgccgtgc 64
|||||||||| |||||||||||||| | ||||||| | ||| |||||||||||| |||||
Sbjct: 449 tgaacctgaccatcccggagcccggcctgagcaccgtgcaggcggtgtgcggcggcgtgc 508
Query: 65 cctgcgcgaccgtgctcatcagcg 88
|||||||| |||||||||||||
Sbjct: 509 ggtgcgcgacggtgctcatcagcg 532
>gb|AL509470.1|AL509470 AL509470 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01O16u 3',
mRNA sequence
Length = 342
Score = 85.7 bits (43), Expect = 1e-015
Identities = 97/113 (85%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 213 gctgccgcggacgtggttcaagtcggtgg-accagctgccgatgaactacggcgacgagc 271
|||| |||| |||||||||||||||| || ||||||||||||||||| || || | |||
Sbjct: 308 gctggcgcgnacgtggttcaagtcggcgggaccagctgccgatgaacgtcgncg-caagc 250
Query: 272 actacgacccgctgttcccgctcgggttcgggctcaccacacagggcaagaag 324
||||||||||||| ||||| |||||||||| |||||||| ||| |||||||
Sbjct: 249 actacgacccgctcttccccttcgggttcggcctcaccaccgaggccaagaag 197
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 64,398
Number of Sequences: 312970
Number of extensions: 64398
Number of successful extensions: 18756
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18663
Number of HSP's gapped (non-prelim): 90
length of query: 574
length of database: 175,134,539
effective HSP length: 19
effective length of query: 555
effective length of database: 169,188,109
effective search space: 93899400495
effective search space used: 93899400495
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)