BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419405.2.1
(1293 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgar... 607 e-172
gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachi... 555 e-156
gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgar... 531 e-149
gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA,... 529 e-149
gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgar... 482 e-134
gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachi... 476 e-133
gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedl... 468 e-130
gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. v... 450 e-125
gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA li... 406 e-112
gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 ... 404 e-111
gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. v... 396 e-109
gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-a... 383 e-104
gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachi... 377 e-103
gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedl... 373 e-101
gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. v... 373 e-101
gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgar... 365 2e-099
gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachi... 361 4e-098
gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachi... 357 6e-097
gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedl... 351 4e-095
gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachi... 341 4e-092
gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachi... 341 4e-092
gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachi... 333 9e-090
gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedl... 331 3e-089
gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedl... 325 2e-087
gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. v... 325 2e-087
gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachi... 323 8e-087
gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 ... 323 8e-087
gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. v... 323 8e-087
gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. v... 321 3e-086
gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. v... 317 5e-085
gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, dro... 315 2e-084
gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA li... 307 5e-082
gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. v... 297 5e-079
gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachi... 295 2e-078
gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. v... 293 7e-078
gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DA... 291 3e-077
gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DA... 291 3e-077
gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedl... 289 1e-076
gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachi... 285 2e-075
gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. v... 285 2e-075
gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. v... 283 7e-075
gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachi... 281 3e-074
gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachi... 281 3e-074
gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. v... 281 3e-074
gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke devel... 280 1e-073
gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. v... 260 1e-067
gb|BI957249.1|BI957249 HVSMEn0008G13f Hordeum vulgare rachi... 258 4e-067
gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA,... 254 6e-066
gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgar... 254 6e-066
gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachi... 248 4e-064
gb|CK124612.1|CK124612 BES1824109m10 BES1824 Hordeum vulgar... 246 2e-063
gb|BM101447.2|BM101447 EBpi01_SQ003_O01_R pistil, 1 DPA, no... 244 6e-063
gb|BI957183.1|BI957183 HVSMEn0007P24f Hordeum vulgare rachi... 236 1e-060
gb|BI960393.1|BI960393 HVSMEn0024H07f Hordeum vulgare rachi... 234 6e-060
gb|BF253787.2|BF253787 HVSMEf0002C01f Hordeum vulgare seedl... 232 2e-059
gb|BG416780.1|BG416780 HVSMEk0014H23f Hordeum vulgare testa... 228 4e-058
gb|BE603113.3|BE603113 HVSMEh0101P24f Hordeum vulgare 5-45 ... 226 1e-057
gb|BG299356.2|BG299356 HVSMEa0019J09f Hordeum vulgare seedl... 224 6e-057
gb|AV917082.1|AV917082 AV917082 K. Sato unpublished cDNA li... 224 6e-057
gb|CA019796.1|CA019796 HV13D05r HV Hordeum vulgare subsp. v... 220 9e-056
gb|BQ759881.1|BQ759881 EBpi05_SQ004_P16_R pistil, 8 DPA, no... 216 1e-054
gb|BQ767036.1|BQ767036 EBro08_SQ007_G24_R root, 3 week, dro... 216 1e-054
gb|BQ469285.1|BQ469285 HM03P13r HM Hordeum vulgare subsp. v... 212 2e-053
gb|CW512145.1|CW512145 ToNAR_Morex_118b Morex Exon trapped ... 208 3e-052
gb|BI958420.1|BI958420 HVSMEn0014O10f Hordeum vulgare rachi... 206 1e-051
gb|BI956518.1|BI956518 HVSMEn0003O09f Hordeum vulgare rachi... 202 2e-050
gb|AJ461923.1|AJ461923 AJ461923 S00002 Hordeum vulgare subs... 194 5e-048
gb|BM372620.2|BM372620 EBpi05_SQ003_H14_R pistil, 8 DPA, no... 190 8e-047
gb|CB882255.1|CB882255 HL01F14w HL Hordeum vulgare subsp. v... 190 8e-047
gb|AV918397.1|AV918397 AV918397 K. Sato unpublished cDNA li... 188 3e-046
gb|BU990646.1|BU990646 HF25K12r HF Hordeum vulgare subsp. v... 188 3e-046
gb|CB876346.1|CB876346 HX11A03w HX Hordeum vulgare subsp. v... 188 3e-046
gb|BJ467335.1|BJ467335 BJ467335 K. Sato unpublished cDNA li... 186 1e-045
gb|BU983094.1|BU983094 HA28I14r HA Hordeum vulgare subsp. v... 186 1e-045
gb|AV918336.1|AV918336 AV918336 K. Sato unpublished cDNA li... 184 5e-045
gb|CA004554.1|CA004554 HS17P08r HS Hordeum vulgare subsp. v... 180 8e-044
gb|BI958795.1|BI958795 HVSMEn0016K11f Hordeum vulgare rachi... 174 5e-042
gb|BU978858.1|BU978858 HA14H15r HA Hordeum vulgare subsp. v... 174 5e-042
gb|BI957226.1|BI957226 HVSMEn0008D17f Hordeum vulgare rachi... 172 2e-041
gb|CA004842.1|CA004842 HS18N14r HS Hordeum vulgare subsp. v... 170 7e-041
gb|BE060291.3|BE060291 HVSMEg0011O02f Hordeum vulgare pre-a... 167 1e-039
gb|AJ462588.1|AJ462588 AJ462588 S00002 Hordeum vulgare subs... 167 1e-039
gb|BQ663461.1|BQ663461 HU02M06u HU Hordeum vulgare subsp. v... 167 1e-039
gb|CA004936.1|CA004936 HU12M15u HU Hordeum vulgare subsp. v... 167 1e-039
gb|AJ436055.1|AJ436055 AJ436055 S00002 Hordeum vulgare subs... 165 5e-039
gb|AL509792.1|AL509792 AL509792 Hordeum vulgare Barke devel... 161 7e-038
gb|BF625170.3|BF625170 HVSMEa0006D08f Hordeum vulgare seedl... 161 7e-038
gb|AJ462522.1|AJ462522 AJ462522 S00002 Hordeum vulgare subs... 161 7e-038
gb|CA028060.1|CA028060 HZ60N21r HZ Hordeum vulgare subsp. v... 157 1e-036
gb|BF260026.3|BF260026 HVSMEf0020O13f Hordeum vulgare seedl... 155 4e-036
gb|AJ462523.1|AJ462523 AJ462523 S00002 Hordeum vulgare subs... 155 4e-036
gb|CA017320.1|CA017320 HV12M19u HV Hordeum vulgare subsp. v... 155 4e-036
gb|BF257516.2|BF257516 HVSMEf0013C01f Hordeum vulgare seedl... 151 7e-035
gb|BI954215.1|BI954215 HVSMEm0016K09f Hordeum vulgare green... 151 7e-035
gb|BM097179.2|BM097179 EBpi07_SQ002_K14_R pistil, 12 DPA, n... 147 1e-033
gb|BU984183.1|BU984183 HF03D17r HF Hordeum vulgare subsp. v... 147 1e-033
gb|BU986289.1|BU986289 HF11E17r HF Hordeum vulgare subsp. v... 147 1e-033
gb|CB880652.1|CB880652 HM07E17w HM Hordeum vulgare subsp. v... 147 1e-033
gb|CB881234.1|CB881234 HM09C23w HM Hordeum vulgare subsp. v... 147 1e-033
gb|BE421427.1|BE421427 HWM009.B12 ITEC HWM Barley Leaf Libr... 145 4e-033
gb|AV928430.1|AV928430 AV928430 K. Sato unpublished cDNA li... 145 4e-033
gb|BJ453165.1|BJ453165 BJ453165 K. Sato unpublished cDNA li... 145 4e-033
gb|BJ460714.1|BJ460714 BJ460714 K. Sato unpublished cDNA li... 145 4e-033
gb|BQ467895.1|BQ467895 HR01E04r HR Hordeum vulgare subsp. v... 145 4e-033
gb|CA001233.1|CA001233 HS18N14u HS Hordeum vulgare subsp. v... 145 4e-033
gb|BI959812.1|BI959812 HVSMEn0021L03f Hordeum vulgare rachi... 141 7e-032
gb|BI956858.1|BI956858 HVSMEn0005K24f Hordeum vulgare rachi... 139 3e-031
gb|BQ765573.1|BQ765573 EBro03_SQ007_F17_R root, 3 week, wat... 137 1e-030
gb|CA001449.1|CA001449 HS17P08u HS Hordeum vulgare subsp. v... 137 1e-030
gb|BQ764067.1|BQ764067 EBro03_SQ006_N05_R root, 3 week, wat... 135 4e-030
gb|BQ661556.1|BQ661556 HM03P13u HM Hordeum vulgare subsp. v... 133 2e-029
gb|BF622288.3|BF622288 HVSMEa0002I16f Hordeum vulgare seedl... 131 6e-029
gb|BF626539.2|BF626539 HVSMEa0018K23f Hordeum vulgare seedl... 125 4e-027
gb|BQ662029.1|BQ662029 HR01E04u HR Hordeum vulgare subsp. v... 125 4e-027
gb|BU968145.1|BU968145 HB06J03r BC Hordeum vulgare subsp. v... 123 2e-026
gb|CK122095.1|CK122095 BES1824101g21 BES1824 Hordeum vulgar... 119 2e-025
gb|BF256315.1|BF256315 HVSMEf0009N16f Hordeum vulgare seedl... 117 9e-025
gb|BM097618.2|BM097618 EBem04_SQ002_D15_R embryo, 12 DPA, n... 115 4e-024
gb|CB883447.1|CB883447 HQ02E17w HQ Hordeum vulgare subsp. v... 115 4e-024
gb|BQ760850.1|BQ760850 EBro03_SQ003_K11_R root, 3 week, wat... 111 6e-023
gb|AJ462525.1|AJ462525 AJ462525 S00002 Hordeum vulgare subs... 107 9e-022
gb|BQ657386.1|BQ657386 HA08J01u HA Hordeum vulgare subsp. v... 107 9e-022
gb|CA018598.1|CA018598 HV09B16r HV Hordeum vulgare subsp. v... 105 4e-021
gb|AL504600.1|AL504600 AL504600 Hordeum vulgare Barke roots... 103 1e-020
gb|BG308983.2|BG308983 HVSMEc0001E03f Hordeum vulgare seedl... 103 1e-020
gb|CA018998.1|CA018998 HV10G08r HV Hordeum vulgare subsp. v... 103 1e-020
gb|CV054003.1|CV054003 BNEL105f8 Barley EST endosperm libra... 103 1e-020
gb|CV054400.1|CV054400 BNEL10B12 Barley EST endosperm libra... 103 1e-020
gb|CV060611.1|CV060611 BNEL5B4 Barley EST endosperm library... 103 1e-020
gb|CV061225.1|CV061225 BNEL66d10 Barley EST endosperm libra... 103 1e-020
gb|CV063217.1|CV063217 BNEL87h3 Barley EST endosperm librar... 103 1e-020
gb|CV063456.1|CV063456 BNEL8E2 Barley EST endosperm library... 103 1e-020
gb|CV063939.1|CV063939 BNEL94h5 Barley EST endosperm librar... 103 1e-020
gb|BQ767806.1|BQ767806 EBro08_SQ009_L19_R root, 3 week, dro... 101 6e-020
gb|CV060955.1|CV060955 BNEL63c5 Barley EST endosperm librar... 98 9e-019
gb|BF254343.3|BF254343 HVSMEf0003L07f Hordeum vulgare seedl... 94 1e-017
gb|BI957319.1|BI957319 HVSMEn0008N17f Hordeum vulgare rachi... 92 5e-017
gb|AV836742.1|AV836742 AV836742 K. Sato unpublished cDNA li... 88 8e-016
gb|BI949344.1|BI949344 HVSMEl0013G22f Hordeum vulgare spike... 88 8e-016
gb|BG300504.2|BG300504 HVSMEb0017E15f Hordeum vulgare seedl... 88 8e-016
gb|BQ458429.1|BQ458429 HA05E07r HA Hordeum vulgare subsp. v... 88 8e-016
gb|BU967134.1|BU967134 HB03G05r BC Hordeum vulgare subsp. v... 88 8e-016
gb|BU981055.1|BU981055 HA22I03r HA Hordeum vulgare subsp. v... 88 8e-016
gb|BU981754.1|BU981754 HA24I17r HA Hordeum vulgare subsp. v... 88 8e-016
gb|BU980470.1|BU980470 HA20M02r HA Hordeum vulgare subsp. v... 86 3e-015
gb|BU997723.1|BU997723 HI08N05r HI Hordeum vulgare subsp. v... 86 3e-015
gb|CA019202.1|CA019202 HV11D04r HV Hordeum vulgare subsp. v... 86 3e-015
gb|BQ470849.1|BQ470849 HX04D14r HX Hordeum vulgare subsp. v... 80 2e-013
gb|BQ664448.1|BQ664448 HV03F01u HV Hordeum vulgare subsp. v... 80 2e-013
gb|BQ665573.1|BQ665573 HX04D14u HX Hordeum vulgare subsp. v... 80 2e-013
gb|CA016939.1|CA016939 HV05K21u HV Hordeum vulgare subsp. v... 80 2e-013
gb|CB882446.1|CB882446 HL01O04w HL Hordeum vulgare subsp. v... 80 2e-013
gb|BQ661443.1|BQ661443 HM03I08u HM Hordeum vulgare subsp. v... 78 8e-013
gb|CB858951.1|CB858951 HI08N05w HI Hordeum vulgare subsp. v... 78 8e-013
gb|CB881625.1|CB881625 HM10G06w HM Hordeum vulgare subsp. v... 78 8e-013
gb|BI956468.1|BI956468 HVSMEn0003I18f Hordeum vulgare rachi... 76 3e-012
gb|BU981183.1|BU981183 HA22N23r HA Hordeum vulgare subsp. v... 76 3e-012
gb|CA017602.1|CA017602 HV05K21r HV Hordeum vulgare subsp. v... 74 1e-011
gb|CA019031.1|CA019031 HV10I11r HV Hordeum vulgare subsp. v... 72 5e-011
gb|CA002220.1|CA002220 HS06N20r HS Hordeum vulgare subsp. v... 70 2e-010
gb|CB880524.1|CB880524 HM06N05w HM Hordeum vulgare subsp. v... 70 2e-010
gb|CV054086.1|CV054086 BNEL106e9 Barley EST endosperm libra... 70 2e-010
gb|BQ468475.1|BQ468475 HM01F21T HM Hordeum vulgare subsp. v... 66 3e-009
gb|BQ469137.1|BQ469137 HM03I08r HM Hordeum vulgare subsp. v... 66 3e-009
gb|CB883976.1|CB883976 HM06N05r HM Hordeum vulgare subsp. v... 66 3e-009
gb|CB884030.1|CB884030 HM10H05r HM Hordeum vulgare subsp. v... 66 3e-009
gb|CB884040.1|CB884040 HM11B07r HM Hordeum vulgare subsp. v... 66 3e-009
gb|CB884057.1|CB884057 HM12C11r HM Hordeum vulgare subsp. v... 66 3e-009
gb|CV061235.1|CV061235 BNEL66d9 Barley EST endosperm librar... 64 1e-008
gb|AJ436682.1|AJ436682 AJ436682 S00002 Hordeum vulgare subs... 62 5e-008
gb|AJ463502.1|AJ463502 AJ463502 S00002 Hordeum vulgare subs... 62 5e-008
gb|CV058074.1|CV058074 BNEL34a7 Barley EST endosperm librar... 62 5e-008
gb|BF260322.3|BF260322 HVSMEf0021L02f Hordeum vulgare seedl... 60 2e-007
gb|CB881506.1|CB881506 HM10A08w HM Hordeum vulgare subsp. v... 56 3e-006
gb|BI776841.2|BI776841 EBpi03_SQ001_B20_R pistil, 4 DPA, no... 52 5e-005
gb|BM443333.2|BM443333 EBro02_SQ003_K03_R root, 3 week, hyd... 52 5e-005
gb|CV055940.1|CV055940 BNEL12B5 Barley EST endosperm librar... 52 5e-005
gb|BG368652.1|BG368652 HVSMEi0020B24f Hordeum vulgare 20 DA... 50 2e-004
gb|BE193294.3|BE193294 HVSMEh0080H17f Hordeum vulgare 5-45 ... 50 2e-004
gb|BE193443.3|BE193443 HVSMEh0081A10f Hordeum vulgare 5-45 ... 50 2e-004
gb|BG367014.2|BG367014 HVSMEi0009N03f Hordeum vulgare 20 DA... 50 2e-004
gb|BG367966.2|BG367966 HVSMEi0015B12f Hordeum vulgare 20 DA... 50 2e-004
gb|BG368109.2|BG368109 HVSMEi0015L12f Hordeum vulgare 20 DA... 50 2e-004
gb|BG368126.2|BG368126 HVSMEi0015M21f Hordeum vulgare 20 DA... 50 2e-004
gb|BG368897.2|BG368897 HVSMEi0021D09f Hordeum vulgare 20 DA... 50 2e-004
gb|BG369955.2|BG369955 HVSMEi0026K23f Hordeum vulgare 20 DA... 50 2e-004
gb|BG369116.2|BG369116 HVSMEi0021M10f Hordeum vulgare 20 DA... 48 7e-004
gb|BQ658207.1|BQ658207 HA05E07u HA Hordeum vulgare subsp. v... 48 7e-004
gb|BM098205.2|BM098205 EBpi03_SQ002_N14_R pistil, 4 DPA, no... 48 7e-004
gb|BU980984.1|BU980984 HA22E18r HA Hordeum vulgare subsp. v... 48 7e-004
gb|BF259345.2|BF259345 HVSMEf0019F13f Hordeum vulgare seedl... 46 0.003
gb|BI951355.1|BI951355 HVSMEl0025K05f Hordeum vulgare spike... 46 0.003
gb|BI960498.1|BI960498 HVSMEn0024M20f Hordeum vulgare rachi... 46 0.003
gb|BI779391.2|BI779391 EBro01_SQ003_N23_R root, 3 week, hyd... 46 0.003
gb|BQ765632.1|BQ765632 EBro03_SQ007_A20_R root, 3 week, wat... 46 0.003
gb|BQ768730.1|BQ768730 EBro08_SQ012_D14_R root, 3 week, dro... 46 0.003
gb|CB878790.1|CB878790 HP09M23T HP Hordeum vulgare subsp. v... 46 0.003
gb|BQ760084.1|BQ760084 EBpi07_SQ003_L04_R pistil, 12 DPA, n... 44 0.011
gb|CA025971.1|CA025971 HZ53L04r HZ Hordeum vulgare subsp. v... 44 0.011
gb|AL503217.1|AL503217 AL503217 Hordeum vulgare Barke roots... 42 0.045
gb|BF266344.2|BF266344 HV_CEa0014N19f Hordeum vulgare seedl... 42 0.045
gb|BG365226.2|BG365226 HVSMEi0001O04f Hordeum vulgare 20 DA... 42 0.045
gb|BM817087.1|BM817087 HC01F09_T3.ab1 HC Hordeum vulgare su... 42 0.045
gb|BM370910.2|BM370910 EBro04_SQ002_M12_R root, 3 week, sal... 42 0.045
gb|BQ754260.1|BQ754260 EBca01_SQ003_F16_R carpel, pre-anthe... 42 0.045
gb|BQ763405.1|BQ763405 EBro02_SQ008_D08_R root, 3 week, hyd... 42 0.045
gb|BU979823.1|BU979823 HA17H17r HA Hordeum vulgare subsp. v... 42 0.045
gb|BU981954.1|BU981954 HA25B14r HA Hordeum vulgare subsp. v... 42 0.045
gb|AH014393.1|SEG_AY643842S Hordeum vulgare subsp. vulgare ... 42 0.045
gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clo... 42 0.045
gb|BG299658.1|BG299658 HVSMEa0021E18f Hordeum vulgare seedl... 40 0.18
gb|BF619275.2|BF619275 HVSMEc0015N19f Hordeum vulgare seedl... 40 0.18
gb|BI947142.1|BI947142 HVSMEl0003O06f Hordeum vulgare spike... 40 0.18
gb|BI956509.1|BI956509 HVSMEn0003N13f Hordeum vulgare rachi... 40 0.18
gb|BE216618.1|BE216618 HV_CEb0010P14f Hordeum vulgare seedl... 40 0.18
gb|BF264917.2|BF264917 HV_CEa0010L22f Hordeum vulgare seedl... 40 0.18
gb|BE215751.2|BE215751 HV_CEb0008G08f Hordeum vulgare seedl... 40 0.18
gb|BJ458363.1|BJ458363 BJ458363 K. Sato unpublished cDNA li... 40 0.18
gb|BM369880.2|BM369880 EBem07_SQ004_O01_R embryo, 28 DPA, n... 40 0.18
gb|BM373361.2|BM373361 EBma04_SQ004_C18_R maternal, 10 DPA,... 40 0.18
gb|BU977492.1|BU977492 HA11I09r HA Hordeum vulgare subsp. v... 40 0.18
gb|BU999150.1|BU999150 HI13G20r HI Hordeum vulgare subsp. v... 40 0.18
gb|CA001653.1|CA001653 HS05D06r HS Hordeum vulgare subsp. v... 40 0.18
gb|CA001922.1|CA001922 HS05P21r HS Hordeum vulgare subsp. v... 40 0.18
gb|CA032711.1|CA032711 HX13P23r HX Hordeum vulgare subsp. v... 40 0.18
gb|CV053780.1|CV053780 BNEL103b1 Barley EST endosperm libra... 40 0.18
gb|CV055815.1|CV055815 BNEL123g3 Barley EST endosperm libra... 40 0.18
gb|CV055830.1|CV055830 BNEL123h7 Barley EST endosperm libra... 40 0.18
gb|CV056915.1|CV056915 BNEL22a4 Barley EST endosperm librar... 40 0.18
gb|CV057070.1|CV057070 BNEL23f9 Barley EST endosperm librar... 40 0.18
gb|CV058118.1|CV058118 BNEL34e4 Barley EST endosperm librar... 40 0.18
gb|CV061126.1|CV061126 BNEL65c11 Barley EST endosperm libra... 40 0.18
gb|CV061989.1|CV061989 BNEL75b12 Barley EST endosperm libra... 40 0.18
gb|CV062224.1|CV062224 BNEL77f7 Barley EST endosperm librar... 40 0.18
gb|CV062989.1|CV062989 BNEL85d2 Barley EST endosperm librar... 40 0.18
gb|CV063145.1|CV063145 BNEL87b12 Barley EST endosperm libra... 40 0.18
>gb|CK125696.1|CK125696 BES1824110b08 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010B0810 5-PRIME, mRNA sequence
Length = 638
Score = 607 bits (306), Expect = e-172
Identities = 437/481 (90%), Gaps = 1/481 (0%)
Strand = Plus / Plus
Query: 204 ggcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgc 263
|||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 152 ggccagggcgacctggtacggccagcccaatggcgccggccccgacgacaacggtggtgc 211
Query: 264 gtgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaacca 323
||||||||||||||||||||||||||||| ||| ||||||| ||||||||| |||||
Sbjct: 212 ctgcggcttcaagcacaccaaccagtacccgttcgcgtccatgacctcctgcggcaacca 271
Query: 324 gccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaagga 383
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct: 272 gccattgttcaaggacggcaagggatgcggctcatgctacaagatcagatgcaggaagga 331
Query: 384 cccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggt 443
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 ccaatcctgctccggcaggacggagacggtgatcatcaccgacatgaactactacccggt 391
Query: 444 gtccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcct 503
| | ||||||||||||||||||||||| |||||||||||||| || ||| |||| ||
Sbjct: 392 ggcgccctaccacttcgacctcagcggcacagcgttcggcaggctcgcaaagcccgggct 451
Query: 504 caacgacaagctccgccactcgggcatcatcgacatcgagttcac-cagggtgccgtgcg 562
|||||||| |||||||||||| ||||||||||||||||||||||| | |||||||||| |
Sbjct: 452 caacgacaggctccgccactccggcatcatcgacatcgagttcacacggggtgccgtggg 511
Query: 563 agttccctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcg 622
||||||| || |||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 512 agttcccggggctcaagatcgggttccacgtggnggagtactcganccccgtctacttcg 571
Query: 623 cggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggagt 682
||||||||||||| || | ||||||||||||||||||||||||||| |||| |||||||
Sbjct: 572 cggtgctggtggantancaagacggcgacggcgacgtggtgcaggtgnacctcatggagt 631
Query: 683 c 683
|
Sbjct: 632 c 632
>gb|BI960089.1|BI960089 HVSMEn0023C15f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0023C15f, mRNA sequence
Length = 646
Score = 555 bits (280), Expect = e-156
Identities = 406/448 (90%)
Strand = Plus / Plus
Query: 183 gtactggggcccctggcagaaggcccgggccacctggtacggccagcccaacggcgccgg 242
|||||||||||||||| |||| |||| |||||||| ||||||||||| ||||||||
Sbjct: 199 gtactggggcccctggaccccggccagggcgacctggtatggccagcccaatggcgccgg 258
Query: 243 cccggacgacaacggtggtgcgtgcggcttcaagcacaccaaccagtaccccttcatgtc 302
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 259 ccccgacgacaacggtggtgcctgcggcttcaagcacaccaaccagtacccgttcgcgtc 318
Query: 303 catgggctcctgcggaaaccagccattgttcaaggacggcaagggatgcggctcctgcta 362
|||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 319 catgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcatgcta 378
Query: 363 caagattcggtgcaggaaggacccgtcctgctccgggcggacggagacggtgatcatcac 422
|||||| | ||||||||||||| ||||||||||| ||||||||||||||||||| ||
Sbjct: 379 caagatcagatgcaggaaggaccaatcctgctccggcaggacggagacggtgatcattac 438
Query: 423 cgacatgaactactacccggtgtccaagtaccacttcgacctcagcggcacggcgttcgg 482
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 439 cgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacggcgttcgg 498
Query: 483 caggctggccaagtccggcctcaacgacaagctccgccactcgggcatcatcgacatcga 542
|||||| || ||| |||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct: 499 caggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcgacatcga 558
Query: 543 gttcaccagggtgccgtgcgagttccctggcctcaagatcgggttccacgtggaggagta 602
|||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 559 gttcacacgggtgccgtgcgagttcccggggctcaagatcgggttccacgtggaggagta 618
Query: 603 ctcgagccccgtctacttcgcggtgctg 630
||||| ||||||||||||||||||||||
Sbjct: 619 ctcgaaccccgtctacttcgcggtgctg 646
>gb|CK122346.1|CK122346 BES1824102p12 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010P122 5-PRIME, mRNA sequence
Length = 717
Score = 531 bits (268), Expect = e-149
Identities = 355/384 (92%)
Strand = Plus / Plus
Query: 300 gtccatgggctcctgcggaaaccagccattgttcaaggacggcaagggatgcggctcctg 359
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 6 gtccatgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcatg 65
Query: 360 ctacaagattcggtgcaggaaggacccgtcctgctccgggcggacggagacggtgatcat 419
||||||||| | ||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 66 ctacaagatcagatgcaggaaggaccaatcctgctccggcaggacggagacggtgatcat 125
Query: 420 caccgacatgaactactacccggtgtccaagtaccacttcgacctcagcggcacggcgtt 479
||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||
Sbjct: 126 caccgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacagcgtt 185
Query: 480 cggcaggctggccaagtccggcctcaacgacaagctccgccactcgggcatcatcgacat 539
||||||||| || ||| |||| |||||||||| |||||||||||| ||||||||||||||
Sbjct: 186 cggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcgacat 245
Query: 540 cgagttcaccagggtgccgtgcgagttccctggcctcaagatcgggttccacgtggagga 599
||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 246 cgagttcacacgggtgccgtgcgagttcccggggctcaagatcgggttccacgtggagga 305
Query: 600 gtactcgagccccgtctacttcgcggtgctggtggagtacgaggacggcgacggcgacgt 659
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtactcgaaccccgtctacttcgcggtgctggtggagtacgaggacggcgacggcgacgt 365
Query: 660 ggtgcaggtggacctgatggagtc 683
||||||||||||||| ||||||||
Sbjct: 366 ggtgcaggtggacctcatggagtc 389
Score = 228 bits (115), Expect = 4e-058
Identities = 151/163 (92%)
Strand = Plus / Plus
Query: 730 gagtcctggggctccgtctggcgcatggacaccaaccaccgcatgcagccgcccttctcc 789
||||| |||||||||||||||||| | ||| ||||||||||| | ||| |||| ||||||
Sbjct: 427 gagtcgtggggctccgtctggcgcctcgactccaaccaccgcctccaggcgccattctcc 486
Query: 790 atccgcatccgcaacgagtccggcaagacgctcgtcgccaggaacgtcatcccggccaac 849
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 487 atccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccggccaac 546
Query: 850 tggaggcccaacaccttctaccgctccttcgtccagtacagct 892
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 547 tggaggcccaacaccttctaccgctccttcgtgcagtacagct 589
>gb|BM372935.2|BM372935 EBma04_SQ002_H04_R maternal, 10 DPA, no treatment, cv Optic, EBma04
Hordeum vulgare subsp. vulgare cDNA clone
EBma04_SQ002_H04 5', mRNA sequence
Length = 612
Score = 529 bits (267), Expect = e-149
Identities = 375/411 (91%)
Strand = Plus / Plus
Query: 204 ggcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgc 263
|||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 202 ggccagggcgacctggtacggccagcccaatggcgccggccccgacgacaacggtggtgc 261
Query: 264 gtgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaacca 323
||||||||||||||||||||||||||||| ||| ||||||| ||||||||| |||||
Sbjct: 262 ctgcggcttcaagcacaccaaccagtacccgttcgcgtccatgacctcctgcggcaacca 321
Query: 324 gccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaagga 383
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct: 322 gccattgttcaaggacggcaagggatgcggctcatgctacaagatcagatgcaggaagga 381
Query: 384 cccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggt 443
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccaatcctgctccggcaggacggagacggtgatcatcaccgacatgaactactacccggt 441
Query: 444 gtccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcct 503
| | ||||||||||||||||||||||| |||||||||||||| || ||| |||| ||
Sbjct: 442 ggcgccctaccacttcgacctcagcggcacagcgttcggcaggctcgcaaagcccgggct 501
Query: 504 caacgacaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcga 563
|||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct: 502 caacgacaggctccgccactccggcatcatcgacatcgagttcacacgggtgccgtgcga 561
Query: 564 gttccctggcctcaagatcgggttccacgtggaggagtactcgagccccgt 614
|||||| || |||||||||||||||||||||||||||||||||| ||||||
Sbjct: 562 gttcccggggctcaagatcgggttccacgtggaggagtactcgaaccccgt 612
>gb|CK123980.1|CK123980 BES1824106f16 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010F166 5-PRIME, mRNA sequence
Length = 750
Score = 482 bits (243), Expect = e-134
Identities = 578/687 (84%), Gaps = 4/687 (0%)
Strand = Plus / Plus
Query: 205 gcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcg 264
||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||
Sbjct: 28 gcccgggccacctggtacggcgcgcccaacggcgccggcccctacgacaacggcggcgct 87
Query: 265 tgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccag 324
||||| |||||| || |||| |||||| |||||| ||||| ||||||||| ||||||
Sbjct: 88 tgcgggttcaagaacgtgaaccggtacccgttcatggccatgacctcctgcggcaaccag 147
Query: 325 ccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggac 384
|| ||||||||||||||||||| |||||| | ||||||||||| ||||| |||| ||
Sbjct: 148 ccgctgttcaaggacggcaagggctgcggcgcatgctacaagatcaagtgcacgaagcac 207
Query: 385 ccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtg 444
| | |||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 208 aaggcgtgctccgggcggcaggagacggtgatgatcacggacatgaactactacccggtg 267
Query: 445 tccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctc 504
| ||||||||||||||||||||||| || ||||||| ||| |||||| |||||| |
Sbjct: 268 gcgccctaccacttcgacctcagcggcaccgccttcggcaagctcgccaagcccggccgc 327
Query: 505 aacgacaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgag 564
|||||| ||||||| ||| | ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 328 aacgacgagctccgacacgccggcatcatcgacatccagttcaccagggtggcgtgcgag 387
Query: 565 ttccctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcg 624
||||| || || ||| | |||||||||||||||||| || | | | || ||| | |||
Sbjct: 388 ttcccggggctgaaggtggggttccacgtggaggaggggtccaacgcggtgtacatggcg 447
Query: 625 gtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggagtcc 684
| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 448 atcctggtggagtacgagaacggcgacggcgacgtggtgcaggtcgacctcatggagtcc 507
Query: 685 aagacggcgcgcgggccgccgacggggcgctgggcgccgatgcgcgagtcctggggctcc 744
| | ||| ||| || || ||| ||| ||| ||| |||||||||||| ||||| |||
Sbjct: 508 --ggccgcggacggcgcggcggcgg-gcggtggacgcggatgcgcgagtcgtggggatcc 564
Query: 745 gtctggcgcatggacaccaaccaccgcatgcagccgcccttctccatccgcatccgcaac 804
|||||||| | ||| ||||||| || | ||| |||| |||||||||||||||||||||
Sbjct: 565 atctggcgcctcgactccaaccatcgtctccaggcgccattctccatccgcatccgcaac 624
Query: 805 gagtccggcaagacgctcgtcgccaggaacgtcat-cccggccaactggaggcccaacac 863
|||||||| ||||||||||||||| | |||||||| ||| ||||||||| |||||||
Sbjct: 625 gagtccggnaagacgctcgtcgcccgcaacgtcatccccnaaaaactggaggnccaacac 684
Query: 864 cttctaccgctccttcgtccagtacag 890
||||||||||||| |||||||||||||
Sbjct: 685 cttctaccgctccatcgtccagtacag 711
>gb|BI957582.1|BI957582 HVSMEn0010D14f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010D14f, mRNA sequence
Length = 628
Score = 476 bits (240), Expect = e-133
Identities = 379/424 (89%), Gaps = 1/424 (0%)
Strand = Plus / Plus
Query: 183 gtactggggcccctggcagaaggcccgggccacctggtacggccagcccaacggcgccgg 242
|||||||||||||||| |||| |||| |||||||| ||||||||||| ||||||||
Sbjct: 201 gtactggggcccctggaccccggccagggcgacctggtatggccagcccaatggcgccgg 260
Query: 243 cccggacgacaacggtggtgcgtgcggcttcaagcacaccaaccagtaccccttcatgtc 302
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 261 ccccgacgacaacggtggtgcctgcggcttcaagcacaccaaccagtacccgttcgcgtc 320
Query: 303 catgggctcctgcggaaaccagccattgttcaaggacggcaagggatgcggctcctgcta 362
|||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 catgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcatgcta 380
Query: 363 caagattcggtgcaggaaggacccgtcctgctccgggcggacggagacggtgatcatcac 422
|||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 381 caagatcagatgcaggaaggaccaatcctgctccggcaggacggagacggtgatcatcac 440
Query: 423 cgacatgaactactacccggtgtccaagtaccacttcgacctcagcggcacggcgttcgg 482
|||||||||||||||||||||| | |||||||||||||| | |||||||||||||||
Sbjct: 441 cgacatgaactactacccggtggcgccctaccacttcgacctgaccggcacggcgttcgg 500
Query: 483 caggctggccaagtccggcctcaacgacaagctccgccactcgggcatcatcgacatcga 542
|||||| || ||| || | |||||||||| |||||||||||| |||||||||||||||||
Sbjct: 501 caggctcgcaaagccccggctcaacgacaggctccgccactccggcatcatcgacatcga 560
Query: 543 gttcaccagggtgccgtgcgagttccctggcctcaagatcgggttccacg-tggaggagt 601
|||||| ||||||||||||| ||||| || ||||||||||||||||||| |||||||||
Sbjct: 561 gttcacacgggtgccgtgcgaattcccggggctcaagatcgggttccacgttggaggagt 620
Query: 602 actc 605
||||
Sbjct: 621 actc 624
>gb|BG310251.1|BG310251 HVSMEc0016K12f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0016K12f, mRNA sequence
Length = 787
Score = 468 bits (236), Expect = e-130
Identities = 365/408 (89%)
Strand = Plus / Plus
Query: 183 gtactggggcccctggcagaaggcccgggccacctggtacggccagcccaacggcgccgg 242
|||||||||||||||| |||| |||| |||||||| ||||||||||| ||||||||
Sbjct: 187 gtactggggcccctggaccccggccagggcgacctggtatggccagcccaatggcgccgg 246
Query: 243 cccggacgacaacggtggtgcgtgcggcttcaagcacaccaaccagtaccccttcatgtc 302
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 247 ccccgacgacaacggtggtgcctgcggcttcaagcacaccaaccagtacccgttcgcgtc 306
Query: 303 catgggctcctgcggaaaccagccattgttcaaggacggcaagggatgcggctcctgcta 362
|||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 307 catgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcatgcta 366
Query: 363 caagattcggtgcaggaaggacccgtcctgctccgggcggacggagacggtgatcatcac 422
|||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct: 367 caagatcagatgcaggaaggaccaatcctgctccggcaggacggagacggtgatcatcac 426
Query: 423 cgacatgaactactacccggtgtccaagtaccacttcgacctcagcggcacggcgttcgg 482
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 427 cgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacggcgttcgg 486
Query: 483 caggctggccaagtccggcctcaacgacaagctccgccactcgggcatcatcgacatcga 542
|||||| || ||| |||| |||||||||| |||||| ||||| |||||||||||||||||
Sbjct: 487 caggctcgcaaagcccgggctcaacgacaggctccggcactccggcatcatcgacatcga 546
Query: 543 gttcaccagggtgccgtgcgagttccctggcctcaagatcgggttcca 590
||||| |||||||||||||||||| || |||||||||||||||||
Sbjct: 547 attcacacgggtgccgtgcgagttcctggggctcaagatcgggttcca 594
>gb|CB882163.1|CB882163 HL01B01w HL Hordeum vulgare subsp. vulgare cDNA clone HL01B01
3-PRIME, mRNA sequence
Length = 574
Score = 450 bits (227), Expect = e-125
Identities = 326/359 (90%)
Strand = Plus / Plus
Query: 204 ggcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgc 263
|||| |||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 216 ggccagggcgacctggtacggccagcccaatggcgccggccccgacgacaacggtggtgc 275
Query: 264 gtgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaacca 323
||||||||||||||||||||||||||||| ||| ||||||| ||||||||| |||||
Sbjct: 276 ctgcggcttcaagcacaccaaccagtacccgttcgcgtccatgacctcctgcggcaacca 335
Query: 324 gccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaagga 383
||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||
Sbjct: 336 gccattgttcaaggacggcaagggatgcggctcatgctacaagatcagatgcaggaagga 395
Query: 384 cccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggt 443
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccaatcctgctccggcaggacggagacggtgatcatcaccgacatgaactactacccggt 455
Query: 444 gtccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcct 503
| | ||||||||||||||||||||||| |||||||||||||| || ||| |||| ||
Sbjct: 456 ggcgccctaccacttcgacctcagcggcacagcgttcggcaggctcgcaaagcccgggct 515
Query: 504 caacgacaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcg 562
|||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 516 caacgacaggctccgccactccggcatcatcgacatcgagttcacacgggtgccgtgcg 574
>gb|AV917139.1|AV917139 AV917139 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags20o17 5', mRNA sequence
Length = 590
Score = 406 bits (205), Expect = e-112
Identities = 431/504 (85%), Gaps = 3/504 (0%)
Strand = Plus / Plus
Query: 391 tgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtccaag 450
|||||||||||| |||||||||||| ||||| ||||||||||||||||||||| |
Sbjct: 19 tgctccgggcggcaggagacggtgatgatcacggacatgaactactacccggtggcgccc 78
Query: 451 taccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacgac 510
||||||||||||||||||||||| || ||||||| ||| |||||| |||||| |||||||
Sbjct: 79 taccacttcgacctcagcggcaccgccttcggcaagctcgccaagcccggccgcaacgac 138
Query: 511 aagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttccct 570
||||||| ||| | ||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 139 gagctccgacacgccggcatcatcgacatccagttcaccagggtggcgtgcgagttcccg 198
Query: 571 ggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcggtgctg 630
|| || ||| | |||||||||||||||||| || | | | || ||| | ||| | |||
Sbjct: 199 gggctgaaggtggggttccacgtggaggaggggtccaacgcggtgtacatggcgatcctg 258
Query: 631 gtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggagtccaagacg 690
|||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| | |
Sbjct: 259 gtggagtacgagaacggcgacggcgacgtggtgcaggtcgacctcatggagtcc--ggcc 316
Query: 691 gcgcgcgggccgccgacggggcgctgggcgccgatgcgcgagtcctggggctccgtctgg 750
||| |||| || || | ||||| ||| ||| |||||||||||| ||||| ||| |||||
Sbjct: 317 gcgggcggcgcggcggc-gggcggtggacgcggatgcgcgagtcgtggggatccatctgg 375
Query: 751 cgcatggacaccaaccaccgcatgcagccgcccttctccatccgcatccgcaacgagtcc 810
||| | ||| ||||||| || | ||| |||| |||||||||||||||||||||||||||
Sbjct: 376 cgcctcgactccaaccatcgtctccaggcgccattctccatccgcatccgcaacgagtcc 435
Query: 811 ggcaagacgctcgtcgccaggaacgtcatcccggccaactggaggcccaacaccttctac 870
|||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||
Sbjct: 436 ggcaagacgctcgtcgcccgcaacgtcatccccaagaactggaggcccaacaccttctac 495
Query: 871 cgctccttcgtccagtacagctag 894
|||||| |||||||||||||||||
Sbjct: 496 cgctccatcgtccagtacagctag 519
>gb|BE454367.2|BE454367 HVSMEh0093N18f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0093N18f, mRNA sequence
Length = 870
Score = 404 bits (204), Expect = e-111
Identities = 255/272 (93%)
Strand = Plus / Plus
Query: 412 gtgatcatcaccgacatgaactactacccggtgtccaagtaccacttcgacctcagcggc 471
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 1 gtgatcatcaccgacatgaactactacccggtggcgccctaccacttcgacctcagcggc 60
Query: 472 acggcgttcggcaggctggccaagtccggcctcaacgacaagctccgccactcgggcatc 531
||||||||||||||||| || ||| |||| |||||||||| |||||||||||| ||||||
Sbjct: 61 acggcgttcggcaggctcgcaaagcccgggctcaacgacaggctccgccactccggcatc 120
Query: 532 atcgacatcgagttcaccagggtgccgtgcgagttccctggcctcaagatcgggttccac 591
||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct: 121 atcgacatcgagttcacacgggtgccgtgcgagttcccggggctcaagatcgggttccac 180
Query: 592 gtggaggagtactcgagccccgtctacttcgcggtgctggtggagtacgaggacggcgac 651
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtggaggagtactcgaaccccgtctacttcgcggtgctggtggagtacgaggacggcgac 240
Query: 652 ggcgacgtggtgcaggtggacctgatggagtc 683
||||||||||||||||||||||| ||||||||
Sbjct: 241 ggcgacgtggtgcaggtggacctcatggagtc 272
Score = 48.1 bits (24), Expect = 7e-004
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 730 gagtcctggggctccgtctggcgcatggacaccaaccaccgcatgcagccgcccttctcc 789
||||| |||||||||||||||||| || || ||||||||| ||||| |||| |||| |
Sbjct: 310 gagtcgtggggctccgtctggcgcctgaactgcaaccaccggctgcaggcgccattctgc 369
Query: 790 atcc 793
||||
Sbjct: 370 atcc 373
>gb|BQ465138.1|BQ465138 HU02M06r HU Hordeum vulgare subsp. vulgare cDNA clone HU02M06
5-PRIME, mRNA sequence
Length = 623
Score = 396 bits (200), Expect = e-109
Identities = 511/611 (83%), Gaps = 4/611 (0%)
Strand = Plus / Plus
Query: 228 gcccaacggcgccggcccggacgacaacggtggtgcgtgcggcttcaagcacaccaacca 287
|||||||||||||||||| |||||||||| || || ||||| |||||| || ||||
Sbjct: 16 gcccaacggcgccggcccctacgacaacggcggcgcttgcgggttcaagaacgtgaaccg 75
Query: 288 gtaccccttcatgtccatgggctcctgcggaaaccagccattgttcaaggacggcaaggg 347
|||||| |||||| ||||| ||||||||| |||||||| |||||||||||||||||||
Sbjct: 76 gtacccgttcatggccatgacctcctgcggcaaccagccgctgttcaaggacggcaaggg 135
Query: 348 atgcggctcctgctacaagattcggtgcaggaaggacccgtcctgctccgggcggacgga 407
|||||| | ||||||||||| ||||| |||| || | | |||||||||||| |||
Sbjct: 136 ctgcggcgcatgctacaagatcaagtgcacgaagcacaaggcgtgctccgggcggcagga 195
Query: 408 gacggtgatcatcaccgacatgaactactacccggtgtccaagtaccacttcgacctcag 467
||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct: 196 gacggtgatgatcacggacatgaactactacccggtggcgccctaccacttcgacctcag 255
Query: 468 cggcacggcgttcggcaggctggccaagtccggcctcaacgacaagctccgccactcggg 527
|||||| || ||||||| ||| |||||| |||||| ||||||| ||||||| ||| | ||
Sbjct: 256 cggcaccgccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccgg 315
Query: 528 catcatcgacatcgagttcaccagggtgccgtgcgagttccctggcctcaagatcgggtt 587
||||||||||||| |||||||||||||| ||||||||||||| || || ||| | |||||
Sbjct: 316 catcatcgacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggtt 375
Query: 588 ccacgtggaggagtactcgagccccgtctacttcgcggtgctggtggagtacgaggacgg 647
||||||||||||| || | | | || ||| | ||| | ||||||||||||||| ||||
Sbjct: 376 ccacgtggaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaacgg 435
Query: 648 cgacggcgacgtggtgcaggtggacctgatggagtccaagacggcgcgcgggccgccgac 707
||||||||||||||||||||| ||||| ||||||||| | | ||| ||| || || |
Sbjct: 436 cgacggcgacgtggtgcaggtcgacctcatggagtcc--ggccgcggacggcgcggcggc 493
Query: 708 ggggcgctgggcgccgatgcgcgagtcctggggctcc-gtctggcgcatggacaccaacc 766
|| ||| ||| ||| |||||||||||| ||||| ||| |||||||| | ||| ||||||
Sbjct: 494 gg-gcggtggacgcggatgcgcgagtcgtggggatccattctggcgcctcgactccaacc 552
Query: 767 accgcatgcagccgcccttctccatccgcatccgcaacgagtccggcaagacgctcgtcg 826
| || | ||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 atcgtctccaggcgccattctccatccgcatccgcaacgagtccggcaagacgctcgtcg 612
Query: 827 ccaggaacgtc 837
|| | ||||||
Sbjct: 613 cccgcaacgtc 623
>gb|BE060246.3|BE060246 HVSMEg0011L08f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0011L08f, mRNA sequence
Length = 544
Score = 383 bits (193), Expect = e-104
Identities = 244/261 (93%)
Strand = Plus / Plus
Query: 423 cgacatgaactactacccggtgtccaagtaccacttcgacctcagcggcacggcgttcgg 482
|||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 1 cgacatgaactactacccggtggcgccctaccacttcgacctcagcggcacggcgttcgg 60
Query: 483 caggctggccaagtccggcctcaacgacaagctccgccactcgggcatcatcgacatcga 542
|||||| || ||| |||| |||||||||| |||||||||||| |||||||||||||||||
Sbjct: 61 caggctcgcaaagcccgggctcaacgacaggctccgccactccggcatcatcgacatcga 120
Query: 543 gttcaccagggtgccgtgcgagttccctggcctcaagatcgggttccacgtggaggagta 602
|||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct: 121 gttcacacgggtgccgtgcgagttcccggggctcaagatcgggttccacgtggaggagta 180
Query: 603 ctcgagccccgtctacttcgcggtgctggtggagtacgaggacggcgacggcgacgtggt 662
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcgaaccccgtctacttcgcggtgctggtggagtacgaggacggcgacggcgacgtggt 240
Query: 663 gcaggtggacctgatggagtc 683
|||||||||||| ||||||||
Sbjct: 241 gcaggtggacctcatggagtc 261
Score = 228 bits (115), Expect = 4e-058
Identities = 151/163 (92%)
Strand = Plus / Plus
Query: 730 gagtcctggggctccgtctggcgcatggacaccaaccaccgcatgcagccgcccttctcc 789
||||| |||||||||||||||||| | ||| ||||||||||| | ||| |||| ||||||
Sbjct: 299 gagtcgtggggctccgtctggcgcctcgactccaaccaccgcctccaggcgccattctcc 358
Query: 790 atccgcatccgcaacgagtccggcaagacgctcgtcgccaggaacgtcatcccggccaac 849
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 359 atccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccggccaac 418
Query: 850 tggaggcccaacaccttctaccgctccttcgtccagtacagct 892
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 419 tggaggcccaacaccttctaccgctccttcgtgcagtacagct 461
>gb|BI959138.1|BI959138 HVSMEn0018F10f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0018F10f, mRNA sequence
Length = 669
Score = 377 bits (190), Expect = e-103
Identities = 406/478 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 97 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 156
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 157 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 216
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 217 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 276
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 277 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 336
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 337 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 396
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 397 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 456
Query: 569 ctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcggtgc 628
|||| |||||| | |||||||||||| || |||| ||| || |||||||| ||||
Sbjct: 457 ctggtctcaaggtgaccttccacgtggagcaggggtcgaacccggtgtacttcgccgtgc 516
Query: 629 tggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggagtccaa 686
||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||
Sbjct: 517 tggtggagtacgaggacggcgacggcgacttggtgcaggtggacctcatggaggccaa 574
>gb|BF618493.2|BF618493 HVSMEc0005N13f Hordeum vulgare seedling shoot EST library
HVcDNA0003 (Etiolated and unstressed) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEc0005N13f, mRNA sequence
Length = 798
Score = 373 bits (188), Expect = e-101
Identities = 372/432 (86%), Gaps = 1/432 (0%)
Strand = Plus / Plus
Query: 183 gtactggggcccctggcagaaggcccgggccacctggtacggccagcccaacggcgccgg 242
|||||||||||||||| |||| |||| |||||||| ||||||||||| ||||||||
Sbjct: 190 gtactggggcccctggaccccggccagggcgacctggtatggccagcccaatggcgccgg 249
Query: 243 cccggacgacaacggtggtgcgtgcggcttcaagcacaccaaccagtaccccttcatgtc 302
||| ||||||||||| ||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 250 ccccgacgacaacggaggtgcctgcggcttcaagcacaccaaccagtacccgttcgcgtc 309
Query: 303 catgggctcctgcggaaaccagccattgttcaaggacggcaagggatgcggctcctgcta 362
|||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 310 catgacctcctgcggcaaccagccattgttcaaggacggcaagggatgcggctcatgcta 369
Query: 363 caagattcggtgcaggaaggacccgtcctgctccgggcggacggagacggtgatcatcac 422
|||||| | ||||||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct: 370 caagatcagatgcaggaaggaccaatcctgctccggcaggacggagacggggatcatcac 429
Query: 423 cgacatgaactactacccggtgtccaagtaccacttcgacctcagcggcacggcgttcgg 482
|||||||||||||||||||| | | ||||||| ||||||| ||| |||||||||||
Sbjct: 430 cgacatgaactactacccgggggcgccctaccactatgacctcaacggaacggcgttcgg 489
Query: 483 caggctggccaagtccggcctcaacgacaagctccgccactcgggcatcatcgacatcga 542
|| ||| | || |||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 490 caagctaccaaaacccgggctcaacgacaagctccgccactccggcatcatcgacatcga 549
Query: 543 gttcac-cagggtgccgtgcgagttccctggcctcaagatcgggttccacgtggaggagt 601
|||||| | || ||||||| | ||||| || ||||||||| || ||||| || | ||||
Sbjct: 550 gttcacaccggaggccgtgccaattcccggggctcaagatcaggatccacatgaaagagt 609
Query: 602 actcgagccccg 613
||| || |||||
Sbjct: 610 acttgaaccccg 621
>gb|CA019997.1|CA019997 HV14A15r HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
5-PRIME, mRNA sequence
Length = 616
Score = 373 bits (188), Expect = e-101
Identities = 407/480 (84%)
Strand = Plus / Plus
Query: 205 gcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcg 264
||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||
Sbjct: 76 gcccgggccacctggtacggcgcgcccaacggcgccggcccctacgacaacggcggcgct 135
Query: 265 tgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccag 324
||||| |||||| || |||| |||||| |||||| ||||| ||||||||| ||||||
Sbjct: 136 tgcgggttcaagaacgtgaaccggtacccgttcatggccatgacctcctgcggcaaccag 195
Query: 325 ccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggac 384
|| ||||||||||||||||||| |||||| | ||||||||||| ||||| |||| ||
Sbjct: 196 ccgctgttcaaggacggcaagggctgcggcgcatgctacaagatcaagtgcacgaagcac 255
Query: 385 ccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtg 444
| | |||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 256 aaggcgtgctccgggcggcaggagacggtgatgatcacggacatgaactactacccggtg 315
Query: 445 tccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctc 504
| ||||||||||||||||||||||| || ||||||| ||| |||||| |||||| |
Sbjct: 316 gcgccctaccacttcgacctcagcggcaccgccttcggcaagctcgccaagcccggccgc 375
Query: 505 aacgacaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgag 564
|||||| ||||||| ||| | ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 376 aacgacgagctccgacacgccggcatcatcgacatccagttcaccagggtggcgtgcgag 435
Query: 565 ttccctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcg 624
||||| || || ||| | |||||||||||||||||| || | | | || ||| | |||
Sbjct: 436 ttcccggggctgaaggtggggttccacgtggaggaggggtccaacgcggtgtacatggcg 495
Query: 625 gtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggagtcc 684
| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 496 atcctggtggagtacgagaacggcgacggcgacgtggtgcaggtcgacctcatggagtcc 555
>gb|CK122737.1|CK122737 BES1824105j22 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J225 5-PRIME, mRNA sequence
Length = 776
Score = 365 bits (184), Expect = 2e-099
Identities = 403/476 (84%)
Strand = Plus / Plus
Query: 205 gcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcg 264
||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||
Sbjct: 145 gcccgggccacctggtacggcgcgcccaacggcgccggcccctacgacaacggcggcgct 204
Query: 265 tgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccag 324
||||| |||||| || |||| |||||| |||||| ||||| ||||||||| ||||||
Sbjct: 205 tgcgggttcaagaacgtgaaccggtacccgttcatggccatgacctcctgcggcaaccag 264
Query: 325 ccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggac 384
|| ||||||||||||||||||| |||||| | ||||||||||| ||||| |||| ||
Sbjct: 265 ccgctgttcaaggacggcaagggctgcggcgcatgctacaagatcaagtgcacgaagcac 324
Query: 385 ccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtg 444
| | |||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 325 aaggcgtgctccgggcggcaggagacggtgatgatcacggacatgaactactacccggtg 384
Query: 445 tccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctc 504
| ||||||||||||||||||||||| || ||||||| ||| |||||| |||||| |
Sbjct: 385 gcgccctaccacttcgacctcagcggcaccgccttcggcaagctcgccaagcccggccgc 444
Query: 505 aacgacaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgag 564
|||||| ||||||| ||| | ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 445 aacgacgagctccgacacgccggcatcatcgacatccagttcaccagggtggcgtgcgag 504
Query: 565 ttccctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcg 624
||||| || || ||| | |||||||||||||||||| || | | | || ||| | |||
Sbjct: 505 ttcccggggctgaaggtggggttccacgtggaggaggggtccaacgcggtgtacatggcg 564
Query: 625 gtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatgga 680
| ||||||||||||||| ||||||||||||||||||||||||| ||||| |||||
Sbjct: 565 atcctggtggagtacgagaacggcgacggcgacgtggtgcaggtcgacctcatgga 620
Score = 65.9 bits (33), Expect = 3e-009
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 787 tccatccgcatccgcaacgagtccggcaagacgctcgtcgccaggaacgtc 837
|||||||||||||||||||||||||| |||| |||| ||||| | ||||||
Sbjct: 726 tccatccgcatccgcaacgagtccggnaagaagctcntcgcccgcaacgtc 776
>gb|BI958784.1|BI958784 HVSMEn0016J13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0016J13f, mRNA sequence
Length = 656
Score = 361 bits (182), Expect = 4e-098
Identities = 393/464 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 193 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 252
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 253 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 312
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 313 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 372
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 373 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 432
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 433 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 492
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 493 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 552
Query: 569 ctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcggtgc 628
|||| |||||| | |||||||||||| || |||| ||| || |||||||| ||||
Sbjct: 553 ctggtctcaaggtgaccttccacgtggagcaggggtcgaacccggtgtacttcgccgtgc 612
Query: 629 tggtggagtacgaggacggcgacggcgacgtggtgcaggtggac 672
||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct: 613 tggtggagtacgaggacggcgacggcgacntggtgcangtggac 656
>gb|BI956772.1|BI956772 HVSMEn0005E06f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0005E06f, mRNA sequence
Length = 796
Score = 357 bits (180), Expect = 6e-097
Identities = 403/478 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 80 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 139
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||||| |||| ||| ||||
Sbjct: 140 ggttcaagaacaccaaccagtaccccttctcctccatgggggggggcggcaacnagccca 199
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 200 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 259
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 260 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 319
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 320 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 379
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 380 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 439
Query: 569 ctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcggtgc 628
|||| |||||| | |||||||||||| || |||| ||| || |||||||| ||||
Sbjct: 440 ctggtctcaaggtgaccttccacgtggagcaggggtcgaacccggtgtacttcgccgtgc 499
Query: 629 tggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatggagtccaa 686
||||||||||||| ||||||||||||||| ||||||| |||||||| |||||| ||||
Sbjct: 500 tggtggagtacgangacggcgacggcgacatggtgcaagtggacctcatggaggccaa 557
>gb|BF254126.2|BF254126 HVSMEf0003B13f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0003B13f, mRNA sequence
Length = 789
Score = 351 bits (177), Expect = 4e-095
Identities = 487/588 (82%), Gaps = 3/588 (0%)
Strand = Plus / Plus
Query: 234 cggcgccggcccggacgacaacggtggtgcgtgcggcttcaagcacaccaaccagtaccc 293
||||||| |||| |||||||||| || || ||||| |||||| || |||| ||||||
Sbjct: 1 cggcgcccgcccctacgacaacggcggcgcttgcgggttcaagaacgtgaaccggtaccc 60
Query: 294 cttcatgtccatgggctcctgcggaaaccagccattgttcaaggacggcaagggatgcgg 353
|||||| ||||| ||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct: 61 gttcatggccatgacctcctgcggcaaccagccgctgttcaaggacggcaagggctgcgg 120
Query: 354 ctcctgctacaagattcggtgcaggaaggacccgtcctgctccgggcggacggagacggt 413
| | ||||||||||| ||||| |||| || | | |||||||||||| |||||||||
Sbjct: 121 cgcatgctacaagatcaagtgcacgaagcacaaggcgtgctccgggcggcaggagacggt 180
Query: 414 gatcatcaccgacatgaactactacccggtgtccaagtaccacttcgacctcagcggcac 473
||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 181 gatgatcacggacatgaactactacccggtggcgccctaccacttcgacctcagcggcac 240
Query: 474 ggcgttcggcaggctggccaagtccggcctcaacgacaagctccgccactcgggcatcat 533
|| ||||||| ||| |||||| |||||| ||||||| ||||||| ||| | ||||||||
Sbjct: 241 cgccttcggcaagctcgccaagcccggccgcaacgacgagctccgacacgccggcatcat 300
Query: 534 cgacatcgagttcaccagggtgccgtgcgagttccctggcctcaagatcgggttccacgt 593
||||||| |||||||||||||| ||||||||||||| || || ||| | |||||||||||
Sbjct: 301 cgacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtggggttccacgt 360
Query: 594 ggaggagtactcgagccccgtctacttcgcggtgctggtggagtacgaggacggcgacgg 653
||||||| || | | | || ||| | ||| | ||||||||||||||| ||||||||||
Sbjct: 361 ggaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaacggcgacgg 420
Query: 654 cgacgtggtgcaggtggacctgatggagtccaagacggcgcgcgggccgccgacggggcg 713
||||||||||||||| ||||| ||||||||| | | ||| ||| || || ||| |||
Sbjct: 421 cgacgtggtgcaggtcgacctcatggagtcc--ggccgcggacggcgcggcggcgg-gcg 477
Query: 714 ctgggcgccgatgcgcgagtcctggggctccgtctggcgcatggacaccaaccaccgcat 773
||| ||| |||||||||||| ||||| | | |||||||| | ||| ||||||| || |
Sbjct: 478 gtggacgcggatgcgcgagtcgtggggattcatctggcgcctcgactccaaccatcgtct 537
Query: 774 gcagccgcccttctccatccgcatccgcaacgagtccggcaagacgct 821
||| |||| ||||||||||||||||||||||||||||| |||||||
Sbjct: 538 acaggcgccattctccatccgcatccgcaacgagtccgggcagacgct 585
>gb|BI959353.1|BI959353 HVSMEn0019F12f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019F12f, mRNA sequence
Length = 669
Score = 341 bits (172), Expect = 4e-092
Identities = 392/464 (84%), Gaps = 1/464 (0%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 207 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 266
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 267 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 326
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 327 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 386
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 387 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 446
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 447 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 506
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 507 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 566
Query: 569 ctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcggtgc 628
|||| |||||| | |||||||||||| || |||| ||| || |||||||| ||||
Sbjct: 567 ctggtctcaag-tgaccttccacgtggagcaggggtcgaacccggtgtacttcgccgtgc 625
Query: 629 tggtggagtacgaggacggcgacggcgacgtggtgcaggtggac 672
||||||||||| |||||||||||||| |||||||||| ||||||
Sbjct: 626 tggtggagtaccaggacggcgacggccacgtggtgcaagtggac 669
>gb|BI960458.1|BI960458 HVSMEn0024K16f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0024K16f, mRNA sequence
Length = 677
Score = 341 bits (172), Expect = 4e-092
Identities = 395/471 (83%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 207 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 266
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 267 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 326
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 327 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 386
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 387 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 446
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 447 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 506
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 507 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 566
Query: 569 ctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcggtgc 628
|||| |||||| | || ||||||||| || |||| ||| || |||||| | ||||
Sbjct: 567 ctggtctcaaggtgaccttncacgtggagcaggggtcgaacccggtgtacttcnccgtgc 626
Query: 629 tggtggagtacgaggacggcgacggcgacgtggtgcaggtggacctgatgg 679
||||||||||| ||||||||||| | ||| |||||||||||||||| ||||
Sbjct: 627 tggtggagtacnaggacggcgacngggacntggtgcaggtggacctcatgg 677
>gb|BI957603.1|BI957603 HVSMEn0010F11f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0010F11f, mRNA sequence
Length = 630
Score = 333 bits (168), Expect = 9e-090
Identities = 363/428 (84%)
Strand = Plus / Plus
Query: 254 acggtggtgcgtgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcct 313
|||||||||||||||| |||||| |||||||||||||||||||| |||||| || |
Sbjct: 200 acggtggtgcgtgcgggttcaagaacaccaaccagtaccccttctcctccatgacatcgt 259
Query: 314 gcggaaaccagccattgttcaaggacggcaagggatgcggctcctgctacaagattcggt 373
|||| ||| |||| | |||||||| |||||||||||||||||||||||| |||| ||||
Sbjct: 260 gcggcaacgagcccatcttcaaggatggcaagggatgcggctcctgctaccagatacggt 319
Query: 374 gcaggaaggacccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaact 433
||| || |||| |||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 320 gcaccaacgaccagtcctgctccggcaacccggagacggtggtcatcaccgacatgaact 379
Query: 434 actacccggtgtccaagtaccacttcgacctcagcggcacggcgttcggcaggctggcca 493
|||||||||| ||||||||||||||||||| || ||||| ||||||||| ||||||
Sbjct: 380 actacccggttgccaagtaccacttcgacctgagtggcaccgcgttcggcgccatggcca 439
Query: 494 agtccggcctcaacgacaagctccgccactcgggcatcatcgacatcgagttcaccaggg 553
|| ||||||||| ||| |||||||| ||||| ||||||||||||||| |||||| || |
Sbjct: 440 agcccggcctcagcgagaagctccggcactccggcatcatcgacatccagttcaagagag 499
Query: 554 tgccgtgcgagttccctggcctcaagatcgggttccacgtggaggagtactcgagccccg 613
||||||||||||||||||| |||||| | |||||||||||| || |||| ||| |
Sbjct: 500 tgccgtgcgagttccctggtctcaaggtgaccttccacgtggagcaggggtcgaacccgg 559
Query: 614 tctacttcgcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggacc 673
| |||||| | ||||||||||||||| | |||||||||||| || |||||||||||||||
Sbjct: 560 tgtacttccccgtgctggtggagtactaagacggcgacggcaacttggtgcaggtggacc 619
Query: 674 tgatggag 681
| ||||||
Sbjct: 620 tcatggag 627
>gb|BF628930.2|BF628930 HVSMEb0009C23f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0009C23f, mRNA sequence
Length = 762
Score = 331 bits (167), Expect = 3e-089
Identities = 386/459 (84%)
Strand = Plus / Plus
Query: 214 acctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcggcttc 273
||||||||||| ||||||||||||||| || ||||||||||| || || |||||||||
Sbjct: 207 acctggtacggagcgcccaacggcgccgggcccgacgacaacggcggcgcttgcggcttc 266
Query: 274 aagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccattgttc 333
|||||| ||||||||||||||| |||||| ||||||||| |||||||| |||||
Sbjct: 267 aagcacgtgaaccagtaccccttctcctccatgacctcctgcggcaaccagcccctgttc 326
Query: 334 aaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgtcctgc 393
|||||||||||||| ||||||||||||||| |||| || ||||| |||| ||||||
Sbjct: 327 aaggacggcaagggctgcggctcctgctaccagatacgatgcagcggcgaccgctcctgc 386
Query: 394 tccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtccaagtac 453
||||| | ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct: 387 tccggcaacatcgagacggtgatgatcaccgacatgaactactacccggtcgcccagtac 446
Query: 454 cacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacgacaag 513
||||| ||||| ||||||||||| |||||| ||||||||||| ||||||||||| |||
Sbjct: 447 cactttgacctgagcggcacggccttcggcgccctggccaagtcgggcctcaacgagaag 506
Query: 514 ctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttccctggc 573
||||||||||||||||||||||||||| |||||| |||||||||||| | ||||| |||
Sbjct: 507 ctccgccactcgggcatcatcgacatccagttcaggagggtgccgtgcaacttccccggc 566
Query: 574 ctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcggtgctggtg 633
||||||||| |||||||||| |||| ||| | | | || ||| | ||||||||| |
Sbjct: 567 ctcaagatcaacttccacgtggtggagggctccaacgcggtgtacctggcggtgctgatc 626
Query: 634 gagtacgaggacggcgacggcgacgtggtgcaggtggac 672
|||||||||||| |||||||||||| | |||||||||
Sbjct: 627 gagtacgaggacatggacggcgacgtgatccaggtggac 665
Score = 58.0 bits (29), Expect = 8e-007
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 722 cgatgcgcgagtcctggggctccgtctggcgcatggacaccaaccaccg 770
||||||||||||| ||||| ||| ||||||| |||||| ||||||||||
Sbjct: 697 cgatgcgcgagtcgtggggatccatctggcggatggactccaaccaccg 745
>gb|BF256653.2|BF256653 HVSMEf0010J19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0010J19f, mRNA sequence
Length = 841
Score = 325 bits (164), Expect = 2e-087
Identities = 338/396 (85%)
Strand = Plus / Plus
Query: 205 gcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcg 264
||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||
Sbjct: 293 gcccgggccacctggtacggcgcgcccaacggcgccggcccctacgacaacggcggcgct 352
Query: 265 tgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccag 324
||||| |||||| || |||| |||||| |||||| ||||| ||||||||| ||||||
Sbjct: 353 tgcgggttcaagaacgtgaaccggtacccgttcatggccatgacctcctgcggcaaccag 412
Query: 325 ccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggac 384
|| ||||||||||||||||||| |||||| | ||||||||||| ||||| |||| ||
Sbjct: 413 ccgctgttcaaggacggcaagggctgcggcgcatgctacaagatcaagtgcacgaagcac 472
Query: 385 ccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtg 444
| | |||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 473 aaggcgtgctccgggcggcaggagacggtgatgatcacggacatgaactactacccggtg 532
Query: 445 tccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctc 504
| ||||||||||||||||||||||| || ||||||| ||| |||||| |||||| |
Sbjct: 533 gcgccctaccacttcgacctcagcggcaccgccttcggcaagctcgccaagcccggccgc 592
Query: 505 aacgacaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgag 564
|||||| ||||||| ||| | ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 593 aacgacgagctccgacacgccggcatcatcgacatccagttcaccagggtggcgtgcgag 652
Query: 565 ttccctggcctcaagatcgggttccacgtggaggag 600
||||| || || ||| | ||||||||||||||||||
Sbjct: 653 ttcccggggctgaaggtggggttccacgtggaggag 688
>gb|CA031744.1|CA031744 HX11A03r HX Hordeum vulgare subsp. vulgare cDNA clone HX11A03
5-PRIME, mRNA sequence
Length = 648
Score = 325 bits (164), Expect = 2e-087
Identities = 338/396 (85%)
Strand = Plus / Plus
Query: 205 gcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcg 264
||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||
Sbjct: 247 gcccgggccacctggtacggcgcgcccaacggcgccggcccctacgacaacggcggcgct 306
Query: 265 tgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccag 324
||||| |||||| || |||| |||||| |||||| ||||| ||||||||| ||||||
Sbjct: 307 tgcgggttcaagaacgtgaaccggtacccgttcatggccatgacctcctgcggcaaccag 366
Query: 325 ccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggac 384
|| ||||||||||||||||||| |||||| | ||||||||||| ||||| |||| ||
Sbjct: 367 ccgctgttcaaggacggcaagggctgcggcgcatgctacaagatcaagtgcacgaagcac 426
Query: 385 ccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtg 444
| | |||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 427 aaggcgtgctccgggcggcaggagacggtgatgatcacggacatgaactactacccggtg 486
Query: 445 tccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctc 504
| ||||||||||||||||||||||| || ||||||| ||| |||||| |||||| |
Sbjct: 487 gcgccctaccacttcgacctcagcggcaccgccttcggcaagctcgccaagcccggccgc 546
Query: 505 aacgacaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgag 564
|||||| ||||||| ||| | ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 547 aacgacgagctccgacacgccggcatcatcgacatccagttcaccagggtggcgtgcgag 606
Query: 565 ttccctggcctcaagatcgggttccacgtggaggag 600
||||| || || ||| | ||||||||||||||||||
Sbjct: 607 ttcccggggctgaaggtggggttccacgtggaggag 642
>gb|BI959328.1|BI959328 HVSMEn0019E09f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019E09f, mRNA sequence
Length = 699
Score = 323 bits (163), Expect = 8e-087
Identities = 359/419 (85%), Gaps = 4/419 (0%)
Strand = Plus / Plus
Query: 183 gtactggggcccctggcagaaggcccgggccacctggtacggccagcccaacggcgccgg 242
|||||||||||||||| |||| |||| |||||||| ||||||||||| ||||||||
Sbjct: 199 gtactggggcccctggaccccggccagggcgacctggtatggccagcccaatggcgccgg 258
Query: 243 cccggacgacaacggtggtgcgtgcggcttcaagcacaccaaccagtaccccttcatgtc 302
||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct: 259 ccccgacgacaacggtggtgcctgcggcttcaagcacaccaaccagtacccgttcgcgtc 318
Query: 303 catgggctcctgcggaaaccagccattgttcaaggacggcaagggatgcggctcctgcta 362
|||| || |||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 319 catgaccttctgcggcaaccagccattgttcaaggacggcaagggatgcggctcatgcta 378
Query: 363 caagattcggtgcaggaaggacccgtcctgctccgggcggacggagacggtgatcatcac 422
|||||| | |||||||| |||| ||||||||||| ||||||||| |||||||||||
Sbjct: 379 caagatcagatgcaggaaagaccaatcctgctccggcaagacggagaccgtgatcatcac 438
Query: 423 cgacatgaactactacccggtgtccaagtaccacttcgacctcagcggcacggc-gttcg 481
|||||||||||||||||||| | | |||||||||||||| | ||||||| ||||
Sbjct: 439 cgacatgaactactacccgggggcgccctaccacttcgaccttcaccgcacggcggttcc 498
Query: 482 gcaggctggccaagtccggcctcaacgacaagctccgccactcgggcatcatcgacatcg 541
||||||| || ||| |||| |||||||||| |||||||||||| | || |||||||| |
Sbjct: 499 gcaggctcgcaaagcccgggctcaacgacaggctccgccactcccggataatcgacattg 558
Query: 542 agtt-caccagggtgccgtgcgagttccctggcctcaagat-cgggttccacgtggagg 598
|||| || | ||||| | |||||||||| || |||||||| |||||||||||||||||
Sbjct: 559 agttacaac-gggtggccggcgagttcccggggctcaagatacgggttccacgtggagg 616
>gb|BE196421.3|BE196421 HVSMEh0092D24f Hordeum vulgare 5-45 DAP spike EST library
HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEh0092D24f, mRNA sequence
Length = 901
Score = 323 bits (163), Expect = 8e-087
Identities = 398/474 (83%), Gaps = 2/474 (0%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 119 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 178
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 179 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 238
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 239 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 298
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 299 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 358
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 359 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 418
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 419 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 478
Query: 569 ctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcggtgc 628
| | |||||| | |||||||||||| || |||| ||| || |||||||| ||||
Sbjct: 479 cctgtctcaag-tgaccttccacgtggagcaggngtcgaacccggtgtacttcgccgtgc 537
Query: 629 tggtggagtacgaggacggcgacggcgacgtggtgc-aggtggacctgatggag 681
||| ||||||||| |||||||||||||||||||||| ||| |||||| ||||||
Sbjct: 538 tgggggagtacgaagacggcgacggcgacgtggtgcaagggggacctaatggag 591
Score = 40.1 bits (20), Expect = 0.18
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 719 cgccgatgcgcgagtcctggggctccgtctgg 750
|||||||||||||||| ||||| ||| |||||
Sbjct: 610 cgccgatgcgcgagtcgtggggatccatctgg 641
>gb|BU995090.1|BU995090 HM09C23r HM Hordeum vulgare subsp. vulgare cDNA clone HM09C23
5-PRIME, mRNA sequence
Length = 653
Score = 323 bits (163), Expect = 8e-087
Identities = 370/439 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 215 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 274
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 275 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 334
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 335 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 394
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 395 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 454
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 455 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 514
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 515 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 574
Query: 569 ctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcggtgc 628
|||| |||||| | |||||||||||| || |||| ||| || |||||||| ||||
Sbjct: 575 ctggtctcaaggtgaccttccacgtggagcaggggtcgaacccggtgtacttcgccgtgc 634
Query: 629 tggtggagtacgaggacgg 647
|||||||||||||||||||
Sbjct: 635 tggtggagtacgaggacgg 653
>gb|BQ459628.1|BQ459628 HA08J01r HA Hordeum vulgare subsp. vulgare cDNA clone HA08J01
5-PRIME, mRNA sequence
Length = 470
Score = 321 bits (162), Expect = 3e-086
Identities = 208/222 (93%), Gaps = 1/222 (0%)
Strand = Plus / Plus
Query: 462 cctcagcggcacggcgttcggcaggctggccaagtccggcctcaacgacaagctccgcca 521
|||||||||||| |||||||||||||| || ||| |||| |||||||||| |||||||||
Sbjct: 1 cctcagcggcacagcgttcggcaggctcgcaaagcccgggctcaacgacaggctccgcca 60
Query: 522 ctcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttccctggcctcaagat 581
||| |||||||||||||||||||| || ||||||||||||||||||| || ||||||||
Sbjct: 61 ctccggcatcatcgacatcgagtt-acacgggtgccgtgcgagttcccggggctcaagat 119
Query: 582 cgggttccacgtggaggagtactcgagccccgtctacttcgcggtgctggtggagtacga 641
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 120 cgggttccacgtggaggagtactcgaaccccgtctacttcgcggtgctggtggagtacga 179
Query: 642 ggacggcgacggcgacgtggtgcaggtggacctgatggagtc 683
||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 180 ggacggcgacggcgacgtggtgcaggtggacctcatggagtc 221
Score = 228 bits (115), Expect = 4e-058
Identities = 151/163 (92%)
Strand = Plus / Plus
Query: 730 gagtcctggggctccgtctggcgcatggacaccaaccaccgcatgcagccgcccttctcc 789
||||| |||||||||||||||||| | ||| ||||||||||| | ||| |||| ||||||
Sbjct: 259 gagtcgtggggctccgtctggcgcctcgactccaaccaccgcctccaggcgccattctcc 318
Query: 790 atccgcatccgcaacgagtccggcaagacgctcgtcgccaggaacgtcatcccggccaac 849
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 319 atccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccggccaac 378
Query: 850 tggaggcccaacaccttctaccgctccttcgtccagtacagct 892
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 379 tggaggcccaacaccttctaccgctccttcgtgcagtacagct 421
>gb|BU980194.1|BU980194 HA18P06r HA Hordeum vulgare subsp. vulgare cDNA clone HA18P06
5-PRIME, mRNA sequence
Length = 495
Score = 317 bits (160), Expect = 5e-085
Identities = 337/396 (85%)
Strand = Plus / Plus
Query: 205 gcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcg 264
||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||
Sbjct: 96 gcccgggccacctggtacggcgcgcccaacggcgccggcccctacgacaacgggggcgct 155
Query: 265 tgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccag 324
||||| |||||| || |||| |||||| |||||| ||||| ||||||||| ||||||
Sbjct: 156 tgcgggttcaagaacgtgaaccggtacccgttcatggccatgacctcctgcggcaaccag 215
Query: 325 ccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggac 384
|| ||||||||||||||||||| |||||| | ||||||||||| ||||| |||| ||
Sbjct: 216 ccgctgttcaaggacggcaagggctgcggcgcatgctacaagatcaagtgcacgaagcac 275
Query: 385 ccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtg 444
| | |||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 276 aaggcgtgctccgggcggcaggagacggtgatgatcacggacatgaactactacccggtg 335
Query: 445 tccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctc 504
| ||||||||||||||||||||||| || ||||||| ||| |||||| |||||| |
Sbjct: 336 gcgccctaccacttcgacctcagcggcaccgccttcggcaagctcgccaagcccggccgc 395
Query: 505 aacgacaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgag 564
|||||| ||||||| ||| | ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 396 aacgacgagctccgacacgccggcatcatcgacatccagttcaccagggtggcgtgcgag 455
Query: 565 ttccctggcctcaagatcgggttccacgtggaggag 600
||||| | || ||| | ||||||||||||||||||
Sbjct: 456 ttcccggagctgaaggtggggttccacgtggaggag 491
>gb|BQ767787.1|BQ767787 EBro08_SQ009_H22_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ009_H22 5', mRNA sequence
Length = 631
Score = 315 bits (159), Expect = 2e-084
Identities = 330/387 (85%)
Strand = Plus / Plus
Query: 214 acctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcggcttc 273
||||||||||| ||||||||||||||| || ||||||||||| || || |||||||||
Sbjct: 213 acctggtacggagcgcccaacggcgccgggcccgacgacaacggcggcgcttgcggcttc 272
Query: 274 aagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccattgttc 333
|||||| ||||||||||||||| |||||| ||||||||| |||||||| |||||
Sbjct: 273 aagcacgtgaaccagtaccccttctcctccatgacctcctgcggcaaccagcccctgttc 332
Query: 334 aaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgtcctgc 393
|||||||||||||| ||||||||||||||| |||| || ||||| |||| ||||||
Sbjct: 333 aaggacggcaagggctgcggctcctgctaccagatacgatgcagcggcgaccgctcctgc 392
Query: 394 tccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtccaagtac 453
||||| | ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct: 393 tccggcaacatcgagacggtgatgatcaccgacatgaactactacccggtcgcccagtac 452
Query: 454 cacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacgacaag 513
||||| ||||| ||||||||||| |||||| ||||||||||| ||||||||||| |||
Sbjct: 453 cactttgacctgagcggcacggccttcggcgccctggccaagtcgggcctcaacgagaag 512
Query: 514 ctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttccctggc 573
||||||||||||||||||||||||||| |||||| |||||||||||| | ||||| |||
Sbjct: 513 ctccgccactcgggcatcatcgacatccagttcaagagggtgccgtgcaacttccccggc 572
Query: 574 ctcaagatcgggttccacgtggaggag 600
||||||||| |||||||||| ||||
Sbjct: 573 ctcaagatcaacttccacgtggtggag 599
>gb|AV923254.1|AV923254 AV923254 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp.
vulgare cDNA clone basd12g18 5', mRNA sequence
Length = 616
Score = 307 bits (155), Expect = 5e-082
Identities = 329/387 (85%)
Strand = Plus / Plus
Query: 214 acctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcggcttc 273
||||||||||| ||||||||||||||| || ||||||||||| || || |||||||||
Sbjct: 229 acctggtacggagcgcccaacggcgccgggcccgacgacaacggcggcgcttgcggcttc 288
Query: 274 aagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccattgttc 333
|||||| ||||||||||||||| |||||| ||||||||| | |||||| |||||
Sbjct: 289 aagcacgtgaaccagtaccccttctcctccatgacctcctgcggcagccagcccctgttc 348
Query: 334 aaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgtcctgc 393
|||||||||||||| ||||||||||||||| |||| || ||||| |||| ||||||
Sbjct: 349 aaggacggcaagggctgcggctcctgctaccagatacgatgcagcggcgaccgctcctgc 408
Query: 394 tccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtccaagtac 453
||||| | ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct: 409 tccggcaacatcgagacggtgatgatcaccgacatgaactactacccggtcgcccagtac 468
Query: 454 cacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacgacaag 513
||||| ||||| ||||||||||| |||||| ||||||||||| ||||||||||| |||
Sbjct: 469 cactttgacctgagcggcacggccttcggcgccctggccaagtcgggcctcaacgagaag 528
Query: 514 ctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttccctggc 573
||||||||||||||||||||||||||| |||||| |||||||||||| | ||||| |||
Sbjct: 529 ctccgccactcgggcatcatcgacatccagttcaggagggtgccgtgcaacttccccggc 588
Query: 574 ctcaagatcgggttccacgtggaggag 600
||||||||| |||||||||| ||||
Sbjct: 589 ctcaagatcaacttccacgtggtggag 615
>gb|CA022237.1|CA022237 HZ42I19r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42I19
5-PRIME, mRNA sequence
Length = 539
Score = 297 bits (150), Expect = 5e-079
Identities = 309/362 (85%)
Strand = Plus / Plus
Query: 214 acctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcggcttc 273
||||||||||| ||||||||||||||| || ||||||||||| || || |||||||||
Sbjct: 178 acctggtacggagcgcccaacggcgccgggcccgacgacaacggcggcgcttgcggcttc 237
Query: 274 aagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccattgttc 333
|||||| ||||||||||||||| |||||| ||||||||| |||||||| |||||
Sbjct: 238 aagcacgtgaaccagtaccccttctcctccatgacctcctgcggcaaccagcccctgttc 297
Query: 334 aaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgtcctgc 393
|||||||||||||| ||||||||||||||| |||| || ||||| |||| ||||||
Sbjct: 298 aaggacggcaagggctgcggctcctgctaccagatacgatgcagcggcgaccgctcctgc 357
Query: 394 tccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtccaagtac 453
||||| | ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct: 358 tccggcaacatcgagacggtgatgatcaccgacatgaactactacccggtcgcccagtac 417
Query: 454 cacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacgacaag 513
||||| ||||| ||||||||||| |||||| ||||||||||| ||||||||||| |||
Sbjct: 418 cactttgacctgagcggcacggccttcggcgccctggccaagtcgggcctcaacgagaag 477
Query: 514 ctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttccctggc 573
||||||||||||||||||||||||||| |||||| |||||||||||| | ||||| |||
Sbjct: 478 ctccgccactcgggcatcatcgacatccagttcaggagggtgccgtgcaacttccccggc 537
Query: 574 ct 575
||
Sbjct: 538 ct 539
>gb|BI959698.1|BI959698 HVSMEn0020N13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020N13f, mRNA sequence
Length = 630
Score = 295 bits (149), Expect = 2e-078
Identities = 359/429 (83%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 202 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 261
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 262 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 321
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 322 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 381
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 382 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 441
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 442 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 501
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 502 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 561
Query: 569 ctggcctcaagatcgggttccacgtggaggagtactcgagccccgtctacttcgcggtgc 628
|||| |||||| | |||||||||||| || |||| ||| || ||||| || ||||
Sbjct: 562 ctggtctcaaggtgaccttccacgtggagcaggggtcgaacccggtgtactttgccgtgc 621
Query: 629 tggtggagt 637
|||||||||
Sbjct: 622 tggtggagt 630
>gb|CA023986.1|CA023986 HZ48A15r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ48A15
5-PRIME, mRNA sequence
Length = 584
Score = 293 bits (148), Expect = 7e-078
Identities = 298/348 (85%)
Strand = Plus / Plus
Query: 214 acctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcggcttc 273
||||||||||| ||||||||||||||| || ||||||||||| || || |||||||||
Sbjct: 227 acctggtacggagcgcccaacggcgccgggcccgacgacaacggcggcgcttgcggcttc 286
Query: 274 aagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccattgttc 333
|||||| ||||||||||||||| |||||| ||||||||| |||||||| |||||
Sbjct: 287 aagcacgtgaaccagtaccccttctcctccatgacctcctgcggcaaccagcccctgttc 346
Query: 334 aaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgtcctgc 393
|||||||||||||| ||||||||||||||| |||| || ||||| |||| ||||||
Sbjct: 347 aaggacggcaagggctgcggctcctgctaccagatacgatgcagcggcgaccgctcctgc 406
Query: 394 tccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtccaagtac 453
||||| | ||||||||||| |||||||||||||||||||||||||| || |||||
Sbjct: 407 tccggcaacatcgagacggtgatgatcaccgacatgaactactacccggtcgcccagtac 466
Query: 454 cacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacgacaag 513
||||| ||||| ||||||||||| |||||| ||||||||||| ||||||||||| |||
Sbjct: 467 cactttgacctgagcggcacggccttcggcgccctggccaagtcgggcctcaacgagaag 526
Query: 514 ctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgc 561
||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 527 ctccgccactcgggcatcatcgacatccagttcaggagggtgccgtgc 574
>gb|BG365461.2|BG365461 HVSMEi0002M09f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0002M09f, mRNA sequence
Length = 754
Score = 291 bits (147), Expect = 3e-077
Identities = 315/371 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 205 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 264
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 265 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 324
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 325 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 384
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 385 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 444
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 445 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 504
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 505 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 564
Query: 569 ctggcctcaag 579
|||| ||||||
Sbjct: 565 ctgggctcaag 575
>gb|BG369408.2|BG369408 HVSMEi0024E17f Hordeum vulgare 20 DAP spike EST library HVcDNA0010
(20 DAP) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEi0024E17f, mRNA sequence
Length = 875
Score = 291 bits (147), Expect = 3e-077
Identities = 315/371 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 193 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 252
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 253 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 312
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 313 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 372
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 373 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 432
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 433 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 492
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 493 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 552
Query: 569 ctggcctcaag 579
|||| ||||||
Sbjct: 553 ctgggctcaag 563
Score = 50.1 bits (25), Expect = 2e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 616 tacttcgcggtgctggtggagtacgaggacggcgacggcgacgtggtgcaggtggac 672
|||||| | ||||||||||||||||||||| ||||| | || ||||||| ||||||
Sbjct: 599 tacttcaccgtgctggtggagtacgaggaccgcgaccggtacctggtgcatgtggac 655
>gb|BF259343.2|BF259343 HVSMEf0019F11f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0019F11f, mRNA sequence
Length = 759
Score = 289 bits (146), Expect = 1e-076
Identities = 308/362 (85%)
Strand = Plus / Plus
Query: 205 gcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcg 264
||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||
Sbjct: 307 gcccgggccacctggtacggcgcgcccaacggcgccggcccctacgacaacggcggcgct 366
Query: 265 tgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccag 324
||||| |||||| || |||| |||||| |||||| ||||| ||||||||| ||||||
Sbjct: 367 tgcgggttcaagaacgtgaaccggtacccgttcatggccatgacctcctgcggcaaccag 426
Query: 325 ccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggac 384
|| ||||||||||||||||||| |||||| | ||||||||||| ||||| |||| ||
Sbjct: 427 ccgctgttcaaggacggcaagggctgcggcgcatgctacaagatcaagtgcacgaagcac 486
Query: 385 ccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtg 444
| | |||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 487 aaggcgtgctccgggcggcaggagacggtgatgatcacggacatgaactactacccggtg 546
Query: 445 tccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctc 504
| |||||||| |||||||||||||| || ||||||| ||| |||||| |||||| |
Sbjct: 547 gcgccctaccacttggacctcagcggcaccgccttcggcaagctcgccaagcccggccgc 606
Query: 505 aacgacaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgag 564
|||||| ||||||| ||| | ||||||||||||||| |||||||||||||| ||||||||
Sbjct: 607 aacgacgagctccgacacgccggcatcatcgacatccagttcaccagggtggcgtgcgag 666
Query: 565 tt 566
||
Sbjct: 667 tt 668
>gb|BI959771.1|BI959771 HVSMEn0021G03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0021G03f, mRNA sequence
Length = 682
Score = 285 bits (144), Expect = 2e-075
Identities = 309/364 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 184 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 243
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 244 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 303
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 304 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 363
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 364 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 423
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 424 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 483
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 484 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 543
Query: 569 ctgg 572
||||
Sbjct: 544 ctgg 547
>gb|CA022206.1|CA022206 HZ42H09r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ42H09
5-PRIME, mRNA sequence
Length = 567
Score = 285 bits (144), Expect = 2e-075
Identities = 309/364 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 202 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 261
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 262 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 321
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 322 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 381
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 382 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 441
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 442 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 501
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 502 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 561
Query: 569 ctgg 572
||||
Sbjct: 562 ctgg 565
>gb|BU978694.1|BU978694 HA14A06r HA Hordeum vulgare subsp. vulgare cDNA clone HA14A06
5-PRIME, mRNA sequence
Length = 421
Score = 283 bits (143), Expect = 7e-075
Identities = 299/351 (85%)
Strand = Plus / Plus
Query: 205 gcccgggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcg 264
||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||
Sbjct: 69 gcccgggccacctggtacggcgcgcccaacggcgccggcccctacgacaacggcggcgct 128
Query: 265 tgcggcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccag 324
||||| |||||| || |||| |||||| |||||| ||||| ||||||||| ||||||
Sbjct: 129 tgcgggttcaagaacgtgaaccggtacccgttcatggccatgacctcctgcggcaaccag 188
Query: 325 ccattgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggac 384
|| ||||||||||||||||||| |||||| | ||||||||||| ||||| |||| ||
Sbjct: 189 ccgctgttcaaggacggcaagggctgcggcgcatgctacaagatcaagtgcacgaagcac 248
Query: 385 ccgtcctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtg 444
| | |||||||||||| |||||||||||| ||||| |||||||||||||||||||||
Sbjct: 249 aaggcgtgctccgggcggcaggagacggtgatgatcacggacatgaactactacccggtg 308
Query: 445 tccaagtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctc 504
| ||||||||||||||||||||||| || ||||||| ||| |||||| |||||| |
Sbjct: 309 gcgccctaccacttcgacctcagcggcaccgccttcggcaagctcgccaagcccggccgc 368
Query: 505 aacgacaagctccgccactcgggcatcatcgacatcgagttcaccagggtg 555
|||||| ||||||| ||| | ||||||||||||||| ||||||||||||||
Sbjct: 369 aacgacgagctccgacacgccggcatcatcgacatccagttcaccagggtg 419
>gb|BI959654.1|BI959654 HVSMEn0020K03f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020K03f, mRNA sequence
Length = 679
Score = 281 bits (142), Expect = 3e-074
Identities = 313/370 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 201 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 260
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 261 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 320
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 321 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 380
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 381 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 440
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 441 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 500
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| ||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 501 agaagctcccgcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 560
Query: 569 ctggcctcaa 578
|||| |||||
Sbjct: 561 ctggtctcaa 570
>gb|BI959720.1|BI959720 HVSMEn0020P05f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0020P05f, mRNA sequence
Length = 615
Score = 281 bits (142), Expect = 3e-074
Identities = 313/370 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 196 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 255
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| ||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 256 ggttcaataacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 315
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 316 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 375
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 376 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 435
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 436 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 495
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttcc 568
| |||||||| ||||| ||||||||||||||| |||||| || ||||||||||||||||
Sbjct: 496 agaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttcc 555
Query: 569 ctggcctcaa 578
|||| |||||
Sbjct: 556 ctggtctcaa 565
>gb|CA017263.1|CA017263 HV14A15u HV Hordeum vulgare subsp. vulgare cDNA clone HV14A15
3-PRIME, mRNA sequence
Length = 569
Score = 281 bits (142), Expect = 3e-074
Identities = 314/369 (85%), Gaps = 3/369 (0%)
Strand = Plus / Minus
Query: 526 ggcatcatcgacatcgagttcaccagggtgccgtgcgagttccctggcctcaagatcggg 585
||||||||||||||| |||||||||||||| ||||||||||||| || || ||| | |||
Sbjct: 568 ggcatcatcgacatccagttcaccagggtggcgtgcgagttcccggggctgaaggtgggg 509
Query: 586 ttccacgtggaggagtactcgagccccgtctacttcgcggtgctggtggagtacgaggac 645
||||||||||||||| || | | | || ||| | ||| | ||||||||||||||| ||
Sbjct: 508 ttccacgtggaggaggggtccaacgcggtgtacatggcgatcctggtggagtacgagaac 449
Query: 646 ggcgacggcgacgtggtgcaggtggacctgatggagtccaagacggcgcgcgggccgccg 705
||||||||||||||||||||||| ||||| ||||||||| | | ||| ||| || ||
Sbjct: 448 ggcgacggcgacgtggtgcaggtcgacctcatggagtcc--ggccgcggacggcgcggcg 391
Query: 706 acggggcgctgggcgccgatgcgcgagtcctggggctccgtctggcgcatggacaccaac 765
||| ||| ||| ||| |||||||||||| ||||| ||| |||||||| | ||| |||||
Sbjct: 390 gcgg-gcggtggacgcggatgcgcgagtcgtggggatccatctggcgcctcgactccaac 332
Query: 766 caccgcatgcagccgcccttctccatccgcatccgcaacgagtccggcaagacgctcgtc 825
|| || | ||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 catcgtctccaggcgccattctccatccgcatccgcaacgagtccggcaagacgctcgtc 272
Query: 826 gccaggaacgtcatcccggccaactggaggcccaacaccttctaccgctccttcgtccag 885
||| | ||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 271 gcccgcaacgtcatccccaagaactggaggcccaacaccttctaccgctccatcgtccag 212
Query: 886 tacagctag 894
|||||||||
Sbjct: 211 tacagctag 203
>gb|AL507275.1|AL507275 AL507275 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01J07V 5',
mRNA sequence
Length = 549
Score = 280 bits (141), Expect = 1e-073
Identities = 310/365 (84%), Gaps = 1/365 (0%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 164 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 223
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 224 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 283
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 284 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 343
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 344 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 403
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaa-c 507
|||||||||||||||| || ||||| ||||||||| |||||||| |||||||||| |
Sbjct: 404 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcaagc 463
Query: 508 gacaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcgagttc 567
|| |||||||| ||||| ||||||||||||||| |||||| || |||||||||||||||
Sbjct: 464 gagaagctccggcactccggcatcatcgacatccagttcaagagagtgccgtgcgagttc 523
Query: 568 cctgg 572
|||||
Sbjct: 524 cctgg 528
>gb|BU993991.1|BU993991 HM05E17r HM Hordeum vulgare subsp. vulgare cDNA clone HM05E17
5-PRIME, mRNA sequence
Length = 560
Score = 260 bits (131), Expect = 1e-067
Identities = 287/339 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 218 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 277
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 278 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 337
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 338 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 397
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 398 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 457
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 458 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 517
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttca 547
| |||||||| ||||| ||||||||||||||| ||||||
Sbjct: 518 agaagctccggcactccggcatcatcgacatccagttca 556
>gb|BI957249.1|BI957249 HVSMEn0008G13f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0008G13f, mRNA sequence
Length = 880
Score = 258 bits (130), Expect = 4e-067
Identities = 226/258 (87%)
Strand = Plus / Plus
Query: 183 gtactggggcccctggcagaaggcccgggccacctggtacggccagcccaacggcgccgg 242
|||||||||||||||| |||| |||| |||||||| ||||||||||| ||||||||
Sbjct: 195 gtactggggcccctggaccccggccagggcgacctggtatggccagcccaatggcgccgg 254
Query: 243 cccggacgacaacggtggtgcgtgcggcttcaagcacaccaaccagtaccccttcatgtc 302
||| ||| ||||||||||||| |||||||||||||||||||||||| |||| ||| ||
Sbjct: 255 ccccgacaacaacggtggtgcctgcggcttcaagcacaccaaccagaacccgttcgcgta 314
Query: 303 catgggctcctgcggaaaccagccattgttcaaggacggcaagggatgcggctcctgcta 362
|||| ||||||||| ||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 315 catgacctcctgcggcaaccagccattgttcaaagacggcaagggatgcggctcatgcta 374
Query: 363 caagattcggtgcaggaaggacccgtcctgctccgggcggacggagacggtgatcatcac 422
|||||| | |||| ||| |||| ||||||||||| |||||||||||||||||| |||
Sbjct: 375 caagatcagatgcaagaaagaccaatcctgctccggcaggacggagacggtgatcagcac 434
Query: 423 cgacatgaactactaccc 440
||||||||||||||||||
Sbjct: 435 cgacatgaactactaccc 452
>gb|BQ758707.1|BQ758707 EBma07_SQ002_G16_R maternal, 21 DPA, no treatment, cv Optic, EBma07
Hordeum vulgare subsp. vulgare cDNA clone
EBma07_SQ002_G16 5', mRNA sequence
Length = 521
Score = 254 bits (128), Expect = 6e-066
Identities = 281/332 (84%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 187 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 246
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 247 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 306
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 307 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 366
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 367 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 426
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| ||||||||| ||
Sbjct: 427 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccggcctcagcg 486
Query: 509 acaagctccgccactcgggcatcatcgacatc 540
| |||||||| ||||| |||||||||||||||
Sbjct: 487 agaagctccggcactccggcatcatcgacatc 518
>gb|CK124171.1|CK124171 BES1824107e17 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010E177 5-PRIME, mRNA sequence
Length = 751
Score = 254 bits (128), Expect = 6e-066
Identities = 146/152 (96%)
Strand = Plus / Plus
Query: 532 atcgacatcgagttcaccagggtgccgtgcgagttccctggcctcaagatcgggttccac 591
||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||
Sbjct: 1 atcgacatcgagttcacacgggtgccgtgcgagttcccggggctcaagatcgggttccac 60
Query: 592 gtggaggagtactcgagccccgtctacttcgcggtgctggtggagtacgaggacggcgac 651
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gtggaggagtactcgaaccccgtctacttcgcggtgctggtggagtacgaggacggcgac 120
Query: 652 ggcgacgtggtgcaggtggacctgatggagtc 683
||||||||||||||||||||||| ||||||||
Sbjct: 121 ggcgacgtggtgcaggtggacctcatggagtc 152
Score = 228 bits (115), Expect = 4e-058
Identities = 151/163 (92%)
Strand = Plus / Plus
Query: 730 gagtcctggggctccgtctggcgcatggacaccaaccaccgcatgcagccgcccttctcc 789
||||| |||||||||||||||||| | ||| ||||||||||| | ||| |||| ||||||
Sbjct: 190 gagtcgtggggctccgtctggcgcctcgactccaaccaccgcctccaggcgccattctcc 249
Query: 790 atccgcatccgcaacgagtccggcaagacgctcgtcgccaggaacgtcatcccggccaac 849
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 250 atccgcatccgcaacgagtccggcaagacgctcgtcgccaacaaggtcatcccggccaac 309
Query: 850 tggaggcccaacaccttctaccgctccttcgtccagtacagct 892
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 310 tggaggcccaacaccttctaccgctccttcgtgcagtacagct 352
Score = 79.8 bits (40), Expect = 2e-013
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 1136 gtgtgggaaaatggaggaggcaggcgtacaatgtacgctctcccgcccact 1186
|||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct: 614 gtgtgggaaaatggaggaggnaggcgtacaagatacgctctcccgcccact 664
>gb|BI959378.1|BI959378 HVSMEn0019H04f Hordeum vulgare rachis EST library HVcDNA0015
(normal) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEn0019H04f, mRNA sequence
Length = 663
Score = 248 bits (125), Expect = 4e-064
Identities = 306/365 (83%), Gaps = 1/365 (0%)
Strand = Plus / Plus
Query: 209 gggccacctggtacggccagcccaacggcgccggcccggacgacaacggtggtgcgtgcg 268
||||||||||||||||| ||||| || |||||||| ||| |||||||||||||||
Sbjct: 205 gggccacctggtacggcgcgcccacgggtgccggccccatggacgacggtggtgcgtgcg 264
Query: 269 gcttcaagcacaccaaccagtaccccttcatgtccatgggctcctgcggaaaccagccat 328
| |||||| |||||||||||||||||||| |||||| || ||||| ||| ||||
Sbjct: 265 ggttcaagaacaccaaccagtaccccttctcctccatgacatcgtgcggcaacgagccca 324
Query: 329 tgttcaaggacggcaagggatgcggctcctgctacaagattcggtgcaggaaggacccgt 388
| |||||||| |||||||||||||||||||||||| |||| ||||||| || |||| ||
Sbjct: 325 tcttcaaggatggcaagggatgcggctcctgctaccagatacggtgcaccaacgaccagt 384
Query: 389 cctgctccgggcggacggagacggtgatcatcaccgacatgaactactacccggtgtcca 448
|||||||||| ||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 385 cctgctccggcaacccggagacggtggtcatcaccgacatgaactactacccggttgcca 444
Query: 449 agtaccacttcgacctcagcggcacggcgttcggcaggctggccaagtccggcctcaacg 508
|||||||||||||||| || ||||| ||||||||| |||||||| |||| |||| ||
Sbjct: 445 agtaccacttcgacctgagtggcaccgcgttcggcgccatggccaagcccgggctcagcg 504
Query: 509 acaagctccgccactcgggcatcatcgacatcgagttcaccagggtgccgtgcg-agttc 567
| |||||||| ||||| |||||||||||||| | |||| || |||||||||| |||||
Sbjct: 505 agaagctccggcactcccgcatcatcgacatccaattcaagagagtgccgtgcgaagttc 564
Query: 568 cctgg 572
|||||
Sbjct: 565 cctgg 569
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 308,701
Number of Sequences: 312970
Number of extensions: 308701
Number of successful extensions: 117065
Number of sequences better than 0.5: 236
Number of HSP's better than 0.5 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116083
Number of HSP's gapped (non-prelim): 767
length of query: 1293
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1274
effective length of database: 169,188,109
effective search space: 215545650866
effective search space used: 215545650866
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)