BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276562.2.1
(1286 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BU989284.1|BU989284 HF21F01r HF Hordeum vulgare subsp. v... 486 e-135
gb|BU994969.1|BU994969 HM08M12r HM Hordeum vulgare subsp. v... 448 e-124
gb|CA017988.1|CA017988 HV07B03r HV Hordeum vulgare subsp. v... 448 e-124
gb|BF254331.2|BF254331 HVSMEf0003K19f Hordeum vulgare seedl... 436 e-121
gb|BQ740108.1|BQ740108 HC105G07 HC Hordeum vulgare subsp. v... 420 e-116
gb|CA027202.1|CA027202 HZ58D01r HZ Hordeum vulgare subsp. v... 367 e-100
gb|BQ459986.1|BQ459986 HA07I14r HA Hordeum vulgare subsp. v... 363 1e-098
gb|BI958463.1|BI958463 HVSMEn0015C15f Hordeum vulgare rachi... 349 1e-094
gb|BF628718.2|BF628718 HVSMEb0007G19f Hordeum vulgare seedl... 347 6e-094
gb|CA026993.1|CA026993 HZ57J07r HZ Hordeum vulgare subsp. v... 347 6e-094
gb|AL506006.1|AL506006 AL506006 Hordeum vulgare Barke devel... 339 1e-091
gb|BQ468773.1|BQ468773 HM02E22r HM Hordeum vulgare subsp. v... 331 3e-089
gb|AV921964.1|AV921964 AV921964 K. Sato unpublished cDNA li... 315 2e-084
gb|BF624943.2|BF624943 HVSMEa0005D18f Hordeum vulgare seedl... 307 5e-082
gb|BE216725.2|BE216725 HV_CEb0011F17f Hordeum vulgare seedl... 307 5e-082
gb|BM098215.2|BM098215 EBpi03_SQ002_O01_R pistil, 4 DPA, no... 307 5e-082
gb|BM370719.2|BM370719 EBro04_SQ001_P16_R root, 3 week, sal... 307 5e-082
gb|AV916674.1|AV916674 AV916674 K. Sato unpublished cDNA li... 303 8e-081
gb|CA025160.1|CA025160 HZ51G03r HZ Hordeum vulgare subsp. v... 303 8e-081
gb|CA025575.1|CA025575 HZ52I20r HZ Hordeum vulgare subsp. v... 295 2e-078
gb|AV914553.1|AV914553 AV914553 K. Sato unpublished cDNA li... 293 7e-078
gb|BJ463409.1|BJ463409 BJ463409 K. Sato unpublished cDNA li... 293 7e-078
gb|BQ459544.1|BQ459544 HA08M15r HA Hordeum vulgare subsp. v... 293 7e-078
gb|BQ460413.1|BQ460413 HA09L02r HA Hordeum vulgare subsp. v... 293 7e-078
gb|BU980869.1|BU980869 HA21O23r HA Hordeum vulgare subsp. v... 293 7e-078
gb|BI957573.1|BI957573 HVSMEn0010D05f Hordeum vulgare rachi... 291 3e-077
gb|BI959597.1|BI959597 HVSMEn0020F15f Hordeum vulgare rachi... 291 3e-077
gb|BU979145.1|BU979145 HA15E14r HA Hordeum vulgare subsp. v... 289 1e-076
gb|CK123368.1|CK123368 BES1824103j21 BES1824 Hordeum vulgar... 287 5e-076
gb|CA020774.1|CA020774 HZ37K18r HZ Hordeum vulgare subsp. v... 285 2e-075
gb|AL450690.1|AL450690 AL450690 Hordeum vulgare Barke etiol... 283 7e-075
gb|AV916100.1|AV916100 AV916100 K. Sato unpublished cDNA li... 280 1e-073
gb|BU979996.1|BU979996 HA18C16r HA Hordeum vulgare subsp. v... 278 4e-073
gb|AV915427.1|AV915427 AV915427 K. Sato unpublished cDNA li... 276 2e-072
gb|CA023591.1|CA023591 HZ46L22r HZ Hordeum vulgare subsp. v... 276 2e-072
gb|BF253867.2|BF253867 HVSMEf0002F12f Hordeum vulgare seedl... 272 3e-071
gb|BF617024.2|BF617024 HVSMEc0014F02f Hordeum vulgare seedl... 270 1e-070
gb|BU994896.1|BU994896 HM08I11r HM Hordeum vulgare subsp. v... 260 1e-067
gb|CA022440.1|CA022440 HZ43D05r HZ Hordeum vulgare subsp. v... 258 4e-067
gb|AV926474.1|AV926474 AV926474 K. Sato unpublished cDNA li... 254 6e-066
gb|AL507314.1|AL507314 AL507314 Hordeum vulgare Barke devel... 246 2e-063
gb|CA020204.1|CA020204 HV14K06r HV Hordeum vulgare subsp. v... 236 1e-060
gb|AV914858.1|AV914858 AV914858 K. Sato unpublished cDNA li... 234 6e-060
gb|BG300247.1|BG300247 HVSMEb0011L19f Hordeum vulgare seedl... 230 9e-059
gb|BG309045.2|BG309045 HVSMEc0001K22f Hordeum vulgare seedl... 220 9e-056
gb|AV916113.1|AV916113 AV916113 K. Sato unpublished cDNA li... 220 9e-056
gb|CA023687.1|CA023687 HZ47B06r HZ Hordeum vulgare subsp. v... 218 3e-055
gb|BG309723.2|BG309723 HVSMEc0012C21f Hordeum vulgare seedl... 210 8e-053
gb|BM369956.2|BM369956 EBro08_SQ002_H12_R root, 3 week, dro... 206 1e-051
gb|BU994141.1|BU994141 HM05O05r HM Hordeum vulgare subsp. v... 206 1e-051
gb|CB880806.1|CB880806 HM07O05w HM Hordeum vulgare subsp. v... 200 8e-050
gb|BU966781.1|BU966781 HB02F11r BC Hordeum vulgare subsp. v... 194 5e-048
gb|CA021772.1|CA021772 HZ41B03r HZ Hordeum vulgare subsp. v... 178 3e-043
gb|AL450795.1|AL450795 AL450795 Hordeum vulgare Barke etiol... 172 2e-041
gb|BI956336.1|BI956336 HVSMEn0002I15f Hordeum vulgare rachi... 167 1e-039
gb|CB881016.1|CB881016 HM08I11w HM Hordeum vulgare subsp. v... 155 4e-036
gb|AL503646.1|AL503646 AL503646 Hordeum vulgare Barke roots... 145 4e-033
gb|BQ661176.1|BQ661176 HM02E22u HM Hordeum vulgare subsp. v... 141 7e-032
gb|BI947155.1|BI947155 HVSMEl0003P07f Hordeum vulgare spike... 129 2e-028
gb|BE437619.1|BE437619 SFR005.G01F990623 ITEC SFR Barley Le... 125 4e-027
gb|AJ434640.1|AJ434640 AJ434640 S00002 Hordeum vulgare subs... 121 6e-026
gb|AL509313.1|AL509313 AL509313 Hordeum vulgare Barke devel... 117 9e-025
gb|AJ435399.1|AJ435399 AJ435399 S00002 Hordeum vulgare subs... 111 6e-023
gb|CV057758.1|CV057758 BNEL30e11 Barley EST endosperm libra... 109 2e-022
gb|AV913257.1|AV913257 AV913257 K. Sato unpublished cDNA li... 103 1e-020
gb|AV919630.1|AV919630 AV919630 K. Sato unpublished cDNA li... 103 1e-020
gb|AV918551.1|AV918551 AV918551 K. Sato unpublished cDNA li... 98 9e-019
gb|CA010258.1|CA010258 HT11C05u HT Hordeum vulgare subsp. v... 98 9e-019
gb|CB880909.1|CB880909 HM08D01w HM Hordeum vulgare subsp. v... 98 9e-019
gb|AL509444.1|AL509444 AL509444 Hordeum vulgare Barke devel... 92 5e-017
gb|BM442857.2|BM442857 EBro02_SQ001_J08_R root, 3 week, hyd... 92 5e-017
gb|BM442871.2|BM442871 EBro02_SQ001_K09_R root, 3 week, hyd... 92 5e-017
gb|BM370181.2|BM370181 EBro08_SQ003_D20_R root, 3 week, dro... 88 8e-016
gb|AV920515.1|AV920515 AV920515 K. Sato unpublished cDNA li... 86 3e-015
gb|BQ767929.1|BQ767929 EBro08_SQ010_A08_R root, 3 week, dro... 80 2e-013
gb|CD664036.1|CD664036 UCRHV18_07ca10_b1 Drought-stressed D... 80 2e-013
gb|AV931358.1|AV931358 AV931358 K. Sato unpublished cDNA li... 78 8e-013
gb|BQ760883.1|BQ760883 EBro03_SQ003_L21_R root, 3 week, wat... 78 8e-013
gb|BU994783.1|BU994783 HM08D01r HM Hordeum vulgare subsp. v... 78 8e-013
gb|BG344202.1|BG344202 HVSMEg0008B11f Hordeum vulgare pre-a... 76 3e-012
gb|AV921232.1|AV921232 AV921232 K. Sato unpublished cDNA li... 40 0.18
>gb|BU989284.1|BU989284 HF21F01r HF Hordeum vulgare subsp. vulgare cDNA clone HF21F01
5-PRIME, mRNA sequence
Length = 536
Score = 486 bits (245), Expect = e-135
Identities = 446/513 (86%)
Strand = Plus / Minus
Query: 516 tgaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtga 575
|||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 516 tgaactgatcattgtagctgttgaatgttgcaagtagctgagctttgctccttgtagtga 457
Query: 576 gaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtattt 635
|||| || | || ||| ||||||||||| ||||||| ||||||| |||| ||||| |
Sbjct: 456 gaatcctgacgacctcatcatcactgtaggccttctcgctgatcttcgcatggagtatct 397
Query: 636 tggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaa 695
|||||||||| || ||||| || || |||||||| |||||||||||||||||||| || |
Sbjct: 396 tggcttcagagtgcgccaacgacgtattcacctccgggccatcatagcggtacgcgctta 337
Query: 696 caagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcga 755
|||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct: 336 caagaggcaccaaaagcttgcggaagtcgccggtgacgtgcgcggcgacgtcctcctcga 277
Query: 756 gcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtgc 815
|||| ||||| || ||||| ||||| ||||||||| | || ||||| |||||||| ||||
Sbjct: 276 gcgagcgcttgaagcggtcgtggtaggcctgcttggcggcgaagaggtgcgcgggggtgc 217
Query: 816 gcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcctcctcgt 875
||||||| |||||||| || ||||||||||| || |||| | |||||| ||||||||||
Sbjct: 216 gcgcgcaggcgatctcgacgagcgcgcggccccccgggttccacttcttggcctcctcgt 157
Query: 876 tcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgccctctcga 935
| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 156 tggccagcaccgcgtcccgctccgccgggtccagcgtccactggatcaccgccctctcga 97
Query: 936 acttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctcggcgt 995
|||||||||||||||||||| || | |||||||||||||| ||||| || |||||||
Sbjct: 96 acttgccgtggatctcgtcggtgatggagcggagcagctcctcgccgtaggcgtcggcgt 37
Query: 996 agccgcggcggatcgcgcggcgctgcgcggcgt 1028
|| |||||| |||||||||||||||||||
Sbjct: 36 agtgcttgcggatggcgcggcgctgcgcggcgt 4
>gb|BU994969.1|BU994969 HM08M12r HM Hordeum vulgare subsp. vulgare cDNA clone HM08M12
5-PRIME, mRNA sequence
Length = 553
Score = 448 bits (226), Expect = e-124
Identities = 470/550 (85%), Gaps = 1/550 (0%)
Strand = Plus / Minus
Query: 389 ccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatg 448
|||||||||| || ||||| ||||| ||||||||||| ||||| ||||| |||| |||
Sbjct: 549 ccaagagccaaccggatgaccttctcaaagtatctgtcggggcaagtgaaacaccttatg 490
Query: 449 atcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatccttgttgatt 508
||||||| ||| || || || ||||| |||||||| || | || || |||||| ||||
Sbjct: 489 atcgccctcagggtcgagaggaactcgtccttgggatcttccttgaggtccttggtgata 430
Query: 509 gcatgagtgaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgt 568
| ||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 429 gggtgactgaactgatcattgtagctgttgaatgttgcaagtagctgagctttgctcctt 370
Query: 569 gtggtgagaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatga 628
|| |||||||| || | || ||| ||||||||||| ||||||| ||||||| ||||
Sbjct: 369 gtagtgagaatcctgacgacctcatcatcactgtaggccttctcgctgatcttcgcatgg 310
Query: 629 agtattttggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtac 688
||||| ||||||||||| || ||||| || || |||||||| ||||||||||||||||||
Sbjct: 309 agtatcttggcttcagagtgcgccaacgacgtattcacctccgggccatcatagcggtac 250
Query: 689 gcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcc 748
|| || ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||
Sbjct: 249 gcgcttacaagaggcaccaaaagcttgcggaagtcgccggtgacgtgcgcggcgacgtcc 190
Query: 749 tcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcg 808
||||||||||| ||||| || ||||| ||||| ||||||||| | || ||||| ||||||
Sbjct: 189 tcctcgagcgagcgcttgaagcggtcgtggtaggcctgcttggcggcgaagaggtgcgcg 130
Query: 809 ggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcc 868
|| ||||||||||| |||||||| || ||||||||||| || |||| | |||| | |||
Sbjct: 129 ggggtgcgcgcgcaggcgatctcgacgagcgcgcggccccccgggttccacttc-tggcc 71
Query: 869 tcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgcc 928
|||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||
Sbjct: 70 tcctcgttggccagcaccgcgtcccgctccgccgggtccagcgtccactggatcaccgcc 11
Query: 929 ctctcgaact 938
||||||||||
Sbjct: 10 ctctcgaact 1
>gb|CA017988.1|CA017988 HV07B03r HV Hordeum vulgare subsp. vulgare cDNA clone HV07B03
5-PRIME, mRNA sequence
Length = 530
Score = 448 bits (226), Expect = e-124
Identities = 404/462 (87%), Gaps = 1/462 (0%)
Strand = Plus / Minus
Query: 516 tgaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtga 575
|||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 462 tgaactgatcattgtagctgttgaatgttgcaagtagctgagctttgctccttgtagtga 403
Query: 576 gaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtattt 635
|||| || | || ||| ||||||||||| ||||||| ||||||| |||| ||||| |
Sbjct: 402 gaatcctgacgacctcatcatcactgtaggccttctcgctgatcttcgcatggagtatct 343
Query: 636 tggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaa 695
|||||||||| || ||||| || || |||||||| |||||||||||||||||||| || |
Sbjct: 342 tggcttcagagtgcgccaacgacgtattcacctccgggccatcatagcggtacgcgctta 283
Query: 696 caagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcga 755
|||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||||||
Sbjct: 282 caagaggcaccaaaagcttgcggaagtcgccggtgacgtgcgcggcgacgtcctcctcga 223
Query: 756 gcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtgc 815
|||| ||||| || ||||| ||||| ||||||||| | || ||||| |||||||| ||||
Sbjct: 222 gcgagcgcttgaagcggtcgtggtaggcctgcttggcggcgaagaggtgcgcgggggtgc 163
Query: 816 gcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcctcctcgt 875
||||||| |||||||| || ||||||||||| || |||| | |||| | ||||||||||
Sbjct: 162 gcgcgcaggcgatctcgacgagcgcgcggccccccgggttccacttc-tggcctcctcgt 104
Query: 876 tcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgccctctcga 935
| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||
Sbjct: 103 tggccagcaccgcgtcccgctccgccgggtccagcgtccactggatcaccgccctctcga 44
Query: 936 acttgccgtggatctcgtcgccgagagcgcggagcagctcct 977
|||||||||||||||||||| || | ||||||||||||||
Sbjct: 43 acttgccgtggatctcgtcggtgatggagcggagcagctcct 2
>gb|BF254331.2|BF254331 HVSMEf0003K19f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEf0003K19f, mRNA sequence
Length = 524
Score = 436 bits (220), Expect = e-121
Identities = 399/459 (86%)
Strand = Plus / Minus
Query: 695 acaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcg 754
||||||||||| | |||||| |||||||||||||| || |||||||| |||||||| |||
Sbjct: 517 acaagaggcaccacaagcttgcggaagtcgccggttacgtgcgcggcnacgtcctcttcg 458
Query: 755 agcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtg 814
||||| ||||| || ||||| ||||| ||||||||| | || ||||| |||||||| |||
Sbjct: 457 agcgagcgcttcaaacggtcgtggtaggcctgcttggcggcgaagaggtgcgcgggggtg 398
Query: 815 cgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcctcctcg 874
|||||||| |||||||| || ||||||||||| || |||| | |||||| |||||||||
Sbjct: 397 cgcgcgcaggcgatctcaacgagcgcgcggccccccgggttccacttcttggcctcctcg 338
Query: 875 ttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgccctctcg 934
|| |||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||
Sbjct: 337 ttggccagcaccgcgtcccgctccgccgggtccagcgtccactggatcaccgccctctcg 278
Query: 935 aacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctcggcg 994
||||||||||||||||||||| || | |||||||||||||| ||||| || ||||||
Sbjct: 277 aacttgccgtggatctcgtcggtgatggagcggagcagctcctcgccgtaggcgtcggcg 218
Query: 995 tagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagatgatc 1054
||| |||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 217 tagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtgggccaggatggagatgatg 158
Query: 1055 agcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcagtcctcggcg 1114
||| ||||||||||||||| || |||| |||||| ||||||||||||||||||||||
Sbjct: 157 agccgctcgttggtgccccacccggcgaacgccttgcggagctgctcgcagtcctcggcc 98
Query: 1115 acggccgggacggaggaaggaacggtgagcgtcgccatt 1153
||||||||||||| || || |||| |||||||||||||
Sbjct: 97 acggccgggacggcggcggggacggagagcgtcgccatt 59
>gb|BQ740108.1|BQ740108 HC105G07 HC Hordeum vulgare subsp. vulgare cDNA clone HC105G07
similar to annexin P35 - maize
gi|1370603|emb|CAA66901.1| (X98245) annexin p35 [Zea
mays], mRNA sequence
Length = 638
Score = 420 bits (212), Expect = e-116
Identities = 506/604 (83%)
Strand = Plus / Minus
Query: 290 ctgtttctcttctgataagcctcctttatcagcttcaggtcgacctcggcgcgagtagtt 349
||||| |||||||| || ||||||||||||| ||||||||| |||||||| ||||| |||
Sbjct: 607 ctgttcctcttctggtacgcctcctttatcaccttcaggtccacctcggcacgagtggtt 548
Query: 350 acgaccctggtgaggtcatcctcatcagtgcccatgcctccaagagccagtcgaatgact 409
| ||||| || ||| | ||| || || || | || |||||||||| || |||||
Sbjct: 547 atcaccctagtaagggtgtgctcgtctgtaccgacaccaccaagagccaaccggatgacc 488
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||||||||| ||||| ||||| |||| |||||||||| ||| || || ||
Sbjct: 487 ttctcaaagtatctgtcggggcaagtgaaacaccttatgatcgccctcagggtcgagagg 428
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
||||| |||||||| || | || || |||||| |||| | ||| |||||||||| |||
Sbjct: 427 aactcgtccttgggatcttccttgaggtccttggtgatagggtgactgaactgatcattg 368
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||||| ||||||||||||||||||||||||||||||| ||| |||||||| || | || |
Sbjct: 367 tagctgttgaatgttgcaagtagctgagctttgctccttgtagtgagaatcctgacgacc 308
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||||||| ||||||| ||||||| |||| ||||| ||||||||||| ||
Sbjct: 307 tcatcatcactgtaggccttctcgctgatcttcgcatggagtatcttggcttcagagtgc 248
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| || || |||||||| |||||||||||||||||||| || ||||||||||| |||
Sbjct: 247 gccaacgacgtattcacctccgggccatcatagcggtacgcgcttacaagaggcaccaaa 188
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| |||||||| ||||||||||||||||| ||||| ||
Sbjct: 187 agcttgcggaagtcgccggtgacgtgcgcggcgacgtcctcctcgagcgagcgcttgaag 128
Query: 770 cggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatc 829
||||| ||||| ||||||||| | || ||||| |||||||| ||||||||||| ||||||
Sbjct: 127 cggtcgtggtaggcctgcttggcggcgaagaggtgcgcgggggtgcgcgcgcaggcgatc 68
Query: 830 tccaccagcgcgcggccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcg 889
|| || ||||||||||| || |||| | |||||| ||||||||||| ||||||||||||
Sbjct: 67 tcgacgagcgcgcggccccccgggttccacttcttggcctcctcgttggccagcaccgcg 8
Query: 890 tccc 893
||||
Sbjct: 7 tccc 4
>gb|CA027202.1|CA027202 HZ58D01r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ58D01
5-PRIME, mRNA sequence
Length = 394
Score = 367 bits (185), Expect = e-100
Identities = 335/385 (87%)
Strand = Plus / Minus
Query: 558 ctttgctccgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatgga 617
||||||||| ||| |||||||| || | || ||| ||||||||||| ||||||| ||
Sbjct: 394 ctttgctccttgtagtgagaatcctgacgacctcatcatcactgtaggccttctcgctga 335
Query: 618 tcttctcatgaagtattttggcttcagaatgagccaaagatgtgttcacctctgggccat 677
||||| |||| ||||| ||||||||||| || ||||| || || |||||||| |||||||
Sbjct: 334 tcttcgcatggagtatcttggcttcagagtgcgccaacgacgtattcacctccgggccat 275
Query: 678 catagcggtacgcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcg 737
||||||||||||| || ||||||||||| |||||||| ||||||||||||||||| ||||
Sbjct: 274 catagcggtacgcgcttacaagaggcaccaaaagcttgcggaagtcgccggtgacgtgcg 215
Query: 738 cggcaacgtcctcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaa 797
|||| ||||||||||||||||| ||||| || ||||| ||||| ||||||||| | || |
Sbjct: 214 cggcgacgtcctcctcgagcgagcgcttgaagcggtcgtggtaggcctgcttggcggcga 155
Query: 798 agagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggc 857
|||| |||||||| ||||||||||| |||||||| || ||||||||||| || |||| |
Sbjct: 154 agaggtgcgcgggggtgcgcgcgcaggcgatctcgacgagcgcgcggccccccgggttcc 95
Query: 858 tcttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccaca 917
|||||| ||||||||||| |||||||||||||||| |||||| |||||||||||||||
Sbjct: 94 acttcttggcctcctcgttggccagcaccgcgtcccgctccgccgggtccagcgtccact 35
Query: 918 ggatcaccgccctctcgaacttgcc 942
|||||||||||||||||||||||||
Sbjct: 34 ggatcaccgccctctcgaacttgcc 10
>gb|BQ459986.1|BQ459986 HA07I14r HA Hordeum vulgare subsp. vulgare cDNA clone HA07I14
5-PRIME, mRNA sequence
Length = 481
Score = 363 bits (183), Expect = 1e-098
Identities = 353/409 (86%), Gaps = 2/409 (0%)
Strand = Plus / Minus
Query: 747 cctcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcg 806
||||||||||||| ||||| || ||||| ||||| ||||||||| | || ||||| ||||
Sbjct: 481 cctcctcgagcgagcgcttgaagcggtcgtggtaggcctgcttggcggcgaagaggtgcg 422
Query: 807 cgggcgtgcgcgcgcacgcgatctccaccagcgcgcgg--ccgccggggtggctcttctt 864
|||| ||||||||||| |||||||| || ||||||||| | || |||| | ||||||
Sbjct: 421 cgggggtgcgcgcgcaggcgatctcgacgagcgcgcgggccnccccgggttccacttctt 362
Query: 865 cgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcac 924
||||||||||| |||||||||||||||| |||||| ||||||||||||||| |||||||
Sbjct: 361 ggcctcctcgttggccagcaccgcgtcccgctccgccgggtccagcgtccactggatcac 302
Query: 925 cgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgta 984
||||||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct: 301 cgccctctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctcgccgta 242
Query: 985 cgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggat 1044
|| ||||||||| |||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 241 ggcgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtgggccaggat 182
Query: 1045 ggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgca 1104
||||||||| ||| ||||||||||||||| || |||| |||||| |||||||||||||
Sbjct: 181 ggagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagctgctcgca 122
Query: 1105 gtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
||||||||| ||||||||||||| || || |||| |||||||||||||
Sbjct: 121 gtcctcggccacggccgggacggcggcggggacggagagcgtcgccatt 73
>gb|BI958463.1|BI958463 HVSMEn0015C15f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0015C15f,
mRNA sequence
Length = 656
Score = 349 bits (176), Expect = 1e-094
Identities = 455/548 (83%)
Strand = Plus / Minus
Query: 527 ttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatg 586
|||||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| |||
Sbjct: 584 ttgtagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatg 525
Query: 587 atctcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaa 646
||||| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||
Sbjct: 524 atctcatcatcaccgtaagccttatgctcgatcttctcatgcagtattttggcctctgaa 465
Query: 647 tgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcact 706
|| ||||| |||||| |||||||| || ||||||||||| | || ||||| |||||
Sbjct: 464 tgtgccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcacc 405
Query: 707 aaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgctta 766
|| ||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct: 404 aagagcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttg 345
Query: 767 aaccggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcg 826
|| ||||||||||| |||||| |||| || ||||||||||||| ||||| ||| |||
Sbjct: 344 aagcggtcatggtaggcctgcctgacggcgaagagctgcgcggagccgcgcgagcaggcg 285
Query: 827 atctccaccagcgcgcggccgccggggtggctcttcttcgcctcctcgttcgccagcacc 886
||||| || ||| || || |||||||| | |||||| || |||||| || ||||||
Sbjct: 284 atctcgacgagcacggggttcccggggtgccacttcttggcggtctcgttggcgagcacc 225
Query: 887 gcgtccctctccgcggggtccagcgtccacaggatcaccgccctctcgaacttgccgtgg 946
||||||| |||||||||||||||||||||||||||||| ||||||||||| | ||| |
Sbjct: 224 gcgtcccgctccgcggggtccagcgtccacaggatcacagccctctcgaagtcgcctgag 165
Query: 947 atctcgtcgccgagagcgcggagcagctccttcccgtacgcctcggcgtagccgcggcgg 1006
||||||||| || ||||||||||||| ||||| | ||||||||| ||||
Sbjct: 164 atctcgtcggtgatgctccggagcagctcctcgccgtaggtgtcggcgtagtgcttgcgg 105
Query: 1007 atcgcgcggcgctgcgcggcgttgcggtgggccaggatggagatgatcagcttctcgttg 1066
|| ||||||||||||||||||| ||||||| |||||||||||||||| ||| ||||||
Sbjct: 104 atggcgcggcgctgcgcggcgtcgcggtggcccaggatggagatgatgagcgcctcgttc 45
Query: 1067 gtgcccca 1074
||||||||
Sbjct: 44 gtgcccca 37
Score = 50.1 bits (25), Expect = 2e-004
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 470 aactcatccttggggtcagctttcagatc 498
|||||||||||||||||||| ||||||||
Sbjct: 641 aactcatccttggggtcagccttcagatc 613
>gb|BF628718.2|BF628718 HVSMEb0007G19f Hordeum vulgare seedling shoot EST library
HVcDNA0002 (Dehydration stress) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEb0007G19f, mRNA sequence
Length = 698
Score = 347 bits (175), Expect = 6e-094
Identities = 436/523 (83%)
Strand = Plus / Minus
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||| || ||||||||||||||||||||||| | |||||| || ||| ||
Sbjct: 642 ttctcaaagtacctatcagggcaggtgaagcaccggataaccgcccggagggttttgagg 583
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 582 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 523
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 522 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 463
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 462 tcatcatcaccgtaagccttatgctcgatcttctcatgcagtattttggcctctgaatgt 403
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 402 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 343
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 342 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 283
Query: 770 cggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatc 829
||||||||||| |||||| |||| || ||||||||||||| ||||| ||| ||||||
Sbjct: 282 cggtcatggtaggcctgcctgacggcgaagagctgcgcggagccgcgcgagcaggcgatc 223
Query: 830 tccaccagcgcgcggccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcg 889
|| || ||| || || |||||||| | |||||| || |||||| || |||||||||
Sbjct: 222 tcgacgagcacggggttcccggggtgccacttcttggcggtctcgttggcgagcaccgcg 163
Query: 890 tccctctccgcggggtccagcgtccacaggatcaccgccctct 932
|||| |||||||||||||||||||||||||||||| |||||||
Sbjct: 162 tcccgctccgcggggtccagcgtccacaggatcacagccctct 120
>gb|CA026993.1|CA026993 HZ57J07r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ57J07
5-PRIME, mRNA sequence
Length = 387
Score = 347 bits (175), Expect = 6e-094
Identities = 322/371 (86%)
Strand = Plus / Minus
Query: 572 gtgagaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagt 631
|||||||| || | || ||| ||||||||||| ||||||| ||||||| |||| |||
Sbjct: 380 gtgagaatcctgacgacctcatcatcactgtaggccttctcgctgatcttcgcatggagt 321
Query: 632 attttggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgca 691
|| ||||||||||| || ||||| || || |||||||| ||||||||||||||||||||
Sbjct: 320 atcttggcttcagagtgcgccaacgacgtattcacctccgggccatcatagcggtacgcg 261
Query: 692 ctaacaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcc 751
|| ||||||||||| |||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 260 cttacaagaggcaccaaaagcttgcggaagtcgccggtgacgtgcgcggcgacgtcctcc 201
Query: 752 tcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcgggc 811
|||||||| ||||| || ||||| ||||| ||||||||| | || ||||| ||||||||
Sbjct: 200 tcgagcgagcgcttgaagcggtcgtggtaggcctgcttggcggcgaagaggtgcgcgggg 141
Query: 812 gtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcctcc 871
||||||||||| |||||||| || ||||||||||| || ||| | |||||| ||||||
Sbjct: 140 gtgcgcgcgcaggcgatctcgacgagcgcgcggccccccggggtccacttcttggcctcc 81
Query: 872 tcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgccctc 931
||||| |||||||||||||||| |||||| ||||||||||||||| ||||||||||||||
Sbjct: 80 tcgttggccagcaccgcgtcccgctccgccgggtccagcgtccactggatcaccgccctc 21
Query: 932 tcgaacttgcc 942
|||||||||||
Sbjct: 20 tcgaacttgcc 10
>gb|AL506006.1|AL506006 AL506006 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01G09T 5',
mRNA sequence
Length = 700
Score = 339 bits (171), Expect = 1e-091
Identities = 489/595 (82%)
Strand = Plus / Minus
Query: 558 ctttgctccgtgtggtgagaattctaatgatctcctcatcactgtaagccttcttatgga 617
||||||||| |||||||| ||||| |||||||| ||||||| ||||||||| | | ||
Sbjct: 700 ctttgctcctggtggtgaggattctgatgatctcatcatcaccgtaagccttgtgctcga 641
Query: 618 tcttctcatgaagtattttggcttcagaatgagccaaagatgtgttcacctctgggccat 677
|||||||||| ||||||||||| || ||||| ||||| |||||| |||||||| || |
Sbjct: 640 tcttctcatgcagtattttggcctctgaatgtgccaaccttgtgttgacctctggtccct 581
Query: 678 catagcggtacgcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcg 737
|||||||||| | || ||||| ||||| || ||||| ||||||||||||||||| ||||
Sbjct: 580 catagcggtatgagcttacaagtggcaccaagagcttgcggaagtcgccggtgacgtgcg 521
Query: 738 cggcaacgtcctcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaa 797
| || ||||||||||||||||| ||||| || ||||||||||| |||||| |||| || |
Sbjct: 520 cagcgacgtcctcctcgagcgagcgcttgaagcggtcatggtaggcctgcctgacggcga 461
Query: 798 agagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggc 857
|||||||||||| ||||| ||| |||||||| || ||| || || || ||||| |
Sbjct: 460 agagctgcgcggagccgcgcgagcaggcgatctcgacgagcacggggttccccgggtgcc 401
Query: 858 tcttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccaca 917
|||||| || |||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 400 acttcttggcggtctcgttggcgagcaccgcgtcccgctccgcggggtccagcgtccaca 341
Query: 918 ggatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctcct 977
||||||| ||||||||||| | ||| |||||||||| || |||||||||||||
Sbjct: 340 ggatcacagccctctcgaagtcgcctgagatctcgtcggtgatgctccggagcagctcct 281
Query: 978 tcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtggg 1037
||||| | ||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 280 cgccgtaggtgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtggc 221
Query: 1038 ccaggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagct 1097
|||||||||||||||| ||| |||||| |||||||| |||| |||||||||| |||| |
Sbjct: 220 ccaggatggagatgatgagcgcctcgttcgtgccccacccttggaaggccttgcggaggt 161
Query: 1098 gctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccat 1152
|||||||| ||||||| ||| |||||| ||| || || |||||||||||||
Sbjct: 160 tgtcgcagtcgtcggcgagggcggggacgttggaggggaccttgagcgtcgccat 106
>gb|BQ468773.1|BQ468773 HM02E22r HM Hordeum vulgare subsp. vulgare cDNA clone HM02E22
5-PRIME, mRNA sequence
Length = 410
Score = 331 bits (167), Expect = 3e-089
Identities = 300/343 (87%), Gaps = 1/343 (0%)
Strand = Plus / Minus
Query: 812 gtgcgcgcgcacgcgatctccaccagcgcgcggccgcc-ggggtggctcttcttcgcctc 870
||||||||||| |||||||| || ||||||||||| || ||||| | |||||| |||||
Sbjct: 407 gtgcgcgcgcaggcgatctcgacgagcgcgcggccccccggggttccacttcttggcctc 348
Query: 871 ctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgccct 930
|||||| |||||||||||||||| |||||| ||||||||||||||| |||||||||||||
Sbjct: 347 ctcgttggccagcaccgcgtcccgctccgccgggtccagcgtccactggatcaccgccct 288
Query: 931 ctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctc 990
||||||||||||||||||||||||| || | |||||||||||||| ||||| || ||
Sbjct: 287 ctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctcgccgtaggcgtc 228
Query: 991 ggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagat 1050
||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 227 ggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtgggccaggatggagat 168
Query: 1051 gatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcagtcctc 1110
||| ||| ||||||||||||||| || |||| |||||| |||||||||||||||||||
Sbjct: 167 gatgagccgctcgttggtgccccacccggcgaacgccttgcggagctgctcgcagtcctc 108
Query: 1111 ggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
||| ||||||||||||| || || |||| |||||||||||||
Sbjct: 107 ggccacggccgggacggcggcggggacggagagcgtcgccatt 65
>gb|AV921964.1|AV921964 AV921964 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19d20 3', mRNA sequence
Length = 670
Score = 315 bits (159), Expect = 2e-084
Identities = 463/563 (82%), Gaps = 1/563 (0%)
Strand = Plus / Plus
Query: 227 gcaagcataatatcctcataatctctagttgtatctttggccacagcacgctccagcggc 286
|||||||| ||||| ||||| ||||| ||||| || |||| ||||| |||||| ||
Sbjct: 107 gcaagcatcatatcttcatagtctctggttgtgtccttggaaacagccttctccaggggg 166
Query: 287 acactgtttctcttctgataagcctcctttatcagcttcaggtcgacctcggcgcgagta 346
|| ||||| |||||||| || ||||||||||||| ||||||||| |||||||| |||||
Sbjct: 167 acgctgttcctcttctggtacgcctcctttatcaccttcaggtccacctcggcacgagtg 226
Query: 347 gttacgaccctggtgaggtcatcctcatcagtgcccatgcctccaagagccagtcgaatg 406
|||| ||||| || ||| | ||| || || || | || |||||||||| || |||
Sbjct: 227 gttatcaccctagtaagggtgtgctcgtctgtaccgacaccaccaagagccaaccggatg 286
Query: 407 actttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaa 466
|| ||||| ||||||||||| ||||| ||||| |||| |||||||||| ||| || ||
Sbjct: 287 accttctcaaagtatctgtcggggcaagtgaaacaccttatgatcgccctcagggtcgag 346
Query: 467 agaaactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatcc 526
|| ||||| |||||||| || | || || |||||| |||| | ||| | ||||||||
Sbjct: 347 aggaactcgtccttgggatcttccttgaggtccttggtgatagggtgactaaactgatca 406
Query: 527 ttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatg 586
|||||||| ||||||||||||||||||||||||||||||| ||| |||||||| || | |
Sbjct: 407 ttgtagctgttgaatgttgcaagtagctgagctttgctccttgtagtgagaatcctgacg 466
Query: 587 atctcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaa 646
| ||| ||||||||||| ||||||| ||||||| |||| ||||| |||||||||||
Sbjct: 467 acctcatcatcactgtaggccttctcgctgatcttcgcatggagtatcttggcttcagag 526
Query: 647 tgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcact 706
|| ||||| || || |||||||| |||||||| ||||||||||| || |||||||||||
Sbjct: 527 tgcgccaacgacgtattcacctccgggccatcgtagcggtacgcgcttacaagaggcacc 586
Query: 707 aaaagctttcggaagtcgcc-ggtgacatgcgcggcaacgtcctcctcgagcgatcgctt 765
|||||||| ||||||||||| |||||| |||||||| ||||||||||||||||| |||||
Sbjct: 587 aaaagcttgcggaagtcgccgggtgacgtgcgcggcgacgtcctcctcgagcgagcgctt 646
Query: 766 aaaccggtcatggtacgcctgct 788
|| ||||| ||||| |||||||
Sbjct: 647 gaagcggtcgtggtaggcctgct 669
>gb|BF624943.2|BF624943 HVSMEa0005D18f Hordeum vulgare seedling shoot EST library HVcDNA0001
(Cold stress) Hordeum vulgare subsp. vulgare cDNA clone
HVSMEa0005D18f, mRNA sequence
Length = 866
Score = 307 bits (155), Expect = 5e-082
Identities = 260/295 (88%)
Strand = Plus / Minus
Query: 859 cttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacag 918
|||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
Sbjct: 354 cttcttggcctcctcgttggccagcaccgcgtcccgctccgccgggtccagcgtccactg 295
Query: 919 gatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctcctt 978
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 294 gatcaccgccctctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctc 235
Query: 979 cccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggc 1038
||||| || ||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct: 234 gccgtaggcgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtgggc 175
Query: 1039 caggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctg 1098
||||||||||||||| ||| ||||||||||||||| || |||| |||||| |||||||
Sbjct: 174 caggatggagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagctg 115
Query: 1099 ctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
||||||||||||||| ||||||||||||| || || |||| |||||||||||||
Sbjct: 114 ctcgcagtcctcggccacggccgggacggcggcggggacggagagcgtcgccatt 60
>gb|BE216725.2|BE216725 HV_CEb0011F17f Hordeum vulgare seedling green leaf EST library
HVcDNA0005 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEb0011F17f, mRNA sequence
Length = 851
Score = 307 bits (155), Expect = 5e-082
Identities = 260/295 (88%)
Strand = Plus / Minus
Query: 859 cttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacag 918
|||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
Sbjct: 388 cttcttggcctcctcgttggccagcaccgcgtcccgctccgccgggtccagcgtccactg 329
Query: 919 gatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctcctt 978
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 328 gatcaccgccctctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctc 269
Query: 979 cccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggc 1038
||||| || ||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct: 268 gccgtaggcgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtgggc 209
Query: 1039 caggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctg 1098
||||||||||||||| ||| ||||||||||||||| || |||| |||||| |||||||
Sbjct: 208 caggatggagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagctg 149
Query: 1099 ctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
||||||||||||||| ||||||||||||| || || |||| |||||||||||||
Sbjct: 148 ctcgcagtcctcggccacggccgggacggcggcggggacggagagcgtcgccatt 94
>gb|BM098215.2|BM098215 EBpi03_SQ002_O01_R pistil, 4 DPA, no treatment, cv Optic, EBpi03
Hordeum vulgare subsp. vulgare cDNA clone
EBpi03_SQ002_O01 5', mRNA sequence
Length = 365
Score = 307 bits (155), Expect = 5e-082
Identities = 260/295 (88%)
Strand = Plus / Minus
Query: 859 cttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacag 918
|||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
Sbjct: 351 cttcttggcctcctcgttggccagcaccgcgtcccgctccgccgggtccagcgtccactg 292
Query: 919 gatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctcctt 978
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 291 gatcaccgccctctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctc 232
Query: 979 cccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggc 1038
||||| || ||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct: 231 gccgtaggcgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtgggc 172
Query: 1039 caggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctg 1098
||||||||||||||| ||| ||||||||||||||| || |||| |||||| |||||||
Sbjct: 171 caggatggagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagctg 112
Query: 1099 ctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
||||||||||||||| ||||||||||||| || || |||| |||||||||||||
Sbjct: 111 ctcgcagtcctcggccacggccgggacggcggcggggacggagagcgtcgccatt 57
>gb|BM370719.2|BM370719 EBro04_SQ001_P16_R root, 3 week, salt-stressed, cv Optic, EBro04
Hordeum vulgare subsp. vulgare cDNA clone
EBro04_SQ001_P16 5', mRNA sequence
Length = 318
Score = 307 bits (155), Expect = 5e-082
Identities = 260/295 (88%)
Strand = Plus / Minus
Query: 859 cttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacag 918
|||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
Sbjct: 312 cttcttggcctcctcgttggccagcaccgcgtcccgctccgccgggtccagcgtccactg 253
Query: 919 gatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctcctt 978
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 252 gatcaccgccctctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctc 193
Query: 979 cccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggc 1038
||||| || ||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct: 192 gccgtaggcgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtgggc 133
Query: 1039 caggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctg 1098
||||||||||||||| ||| ||||||||||||||| || |||| |||||| |||||||
Sbjct: 132 caggatggagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagctg 73
Query: 1099 ctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
||||||||||||||| ||||||||||||| || || |||| |||||||||||||
Sbjct: 72 ctcgcagtcctcggccacggccgggacggcggcggggacggagagcgtcgccatt 18
>gb|AV916674.1|AV916674 AV916674 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags19d20 5', mRNA sequence
Length = 529
Score = 303 bits (153), Expect = 8e-081
Identities = 424/513 (82%), Gaps = 1/513 (0%)
Strand = Plus / Minus
Query: 277 ctccagcggcacactgtttctcttctgataagcctcctttatcagcttcaggtcgacctc 336
|||||| || || ||||| |||||||| || ||||||||||||| ||||||||| |||||
Sbjct: 525 ctccagggggacgctgttcctcttctggtacgcctcctttatcaccttcaggtccacctc 466
Query: 337 ggcgcgagtagttacgaccctggtgaggtcatcctcatcagtgcccatgcctccaagagc 396
||| ||||| |||| ||||| || ||| | ||| || || || | || ||||||||
Sbjct: 465 ggcacgagtggttatcaccctagtaagggtgtgctcgtctgtaccgacaccaccaagagc 406
Query: 397 cagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccg 456
|| || ||||| ||||| ||||||||||| ||||| ||||| |||| ||||||||||
Sbjct: 405 caaccggatgaccttctcaaagtatctgtcggggcaagtgaaacaccttatgatcgccct 346
Query: 457 cagtgttgaaagaaactcatccttggggtcagctttcagatccttgttgattgcatgagt 516
||| || || || ||||| |||||||| || | || || |||||| |||| | ||| |
Sbjct: 345 cagggtcgagaggaactcgtccttgggatcttccttgaggtccttggtgatagggtgact 286
Query: 517 gaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgag 576
|||||||| |||||||| ||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 285 aaactgatcattgtagctgttgaatgttgcaagtagctgagctttgctccttgtagtgag 226
Query: 577 aattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtatttt 636
||| || | || ||| ||||||||||| ||||||| ||||||| |||| ||||| ||
Sbjct: 225 aatcctgacgacctcatcatcactgtaggccttctcgctgatcttcgcatggagtatctt 166
Query: 637 ggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaac 696
||||||||| || ||||| || || |||||||| |||||||| ||||||||||| || ||
Sbjct: 165 ggcttcagagtgcgccaacgacgtattcacctccgggccatcgtagcggtacgcgcttac 106
Query: 697 aagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgag 756
||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 105 aagaggcaccaaaagcttgcggaagtcgccggtgacgtgcgcggcgacgtcctcctcgag 46
Query: 757 cgatcg-cttaaaccggtcatggtacgcctgct 788
||| || ||| || ||||| ||||| |||||||
Sbjct: 45 cgagcgncttgaagcggtcgtggtaggcctgct 13
>gb|CA025160.1|CA025160 HZ51G03r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ51G03
5-PRIME, mRNA sequence
Length = 636
Score = 303 bits (153), Expect = 8e-081
Identities = 441/537 (82%)
Strand = Plus / Minus
Query: 616 gatcttctcatgaagtattttggcttcagaatgagccaaagatgtgttcacctctgggcc 675
|||||||||||| ||||||||||| || ||||| ||||| |||||| |||||||| ||
Sbjct: 623 gatcttctcatgcagtattttggcctctgaatgtgccaaccttgtgttgacctctggtcc 564
Query: 676 atcatagcggtacgcactaacaagaggcactaaaagctttcggaagtcgccggtgacatg 735
||||||||||| | || ||||| ||||| || ||||| ||||||||||||||||| ||
Sbjct: 563 ctcatagcggtatgagcttacaagtggcaccaagagcttgcggaagtcgccggtgacgtg 504
Query: 736 cgcggcaacgtcctcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgc 795
||| || ||||||||||||||||| ||||| || ||||||||||| |||||| |||| ||
Sbjct: 503 cgcagcgacgtcctcctcgagcgagcgcttgaagcggtcatggtaggcctgcctgacggc 444
Query: 796 aaagagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtg 855
||||||||||||| ||||| ||| |||||||| || ||| || || || |||||
Sbjct: 443 gaagagctgcgcggagccgcgcgagcaggcgatctcgacgagcacggggttccccgggtg 384
Query: 856 gctcttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtcca 915
| |||||| || |||||| || ||||||||||||| |||||||||||||||||||||
Sbjct: 383 ccacttcttggcggtctcgttggcgagcaccgcgtcccgctccgcggggtccagcgtcca 324
Query: 916 caggatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctc 975
||||||||| ||||||||||| | ||| |||||||||| || |||||||||||
Sbjct: 323 caggatcacagccctctcgaagtcgcctgagatctcgtcggtgatgctccggagcagctc 264
Query: 976 cttcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtg 1035
|| ||||| | ||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct: 263 ctcgccgtaggtgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtg 204
Query: 1036 ggccaggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggag 1095
| |||||||||||||||| ||| |||||| |||||||| |||| |||||||||| ||||
Sbjct: 203 gcccaggatggagatgatgagcgcctcgttcgtgccccacccttggaaggccttgcggag 144
Query: 1096 ctgctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccat 1152
| |||||||| ||||||| ||| |||||| ||| || || |||||||||||||
Sbjct: 143 gttgtcgcagtcgtcggcgagggcggggacgttggaggggaccttgagcgtcgccat 87
>gb|CA025575.1|CA025575 HZ52I20r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ52I20
5-PRIME, mRNA sequence
Length = 294
Score = 295 bits (149), Expect = 2e-078
Identities = 239/269 (88%)
Strand = Plus / Minus
Query: 859 cttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacag 918
|||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
Sbjct: 277 cttcttggcctcctcgttggccagcaccgcgtcccgctccgccgggtccagcgtccactg 218
Query: 919 gatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctcctt 978
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 217 gatcaccgccctctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctc 158
Query: 979 cccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggc 1038
||||| || ||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct: 157 gccgtaggcgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtgggc 98
Query: 1039 caggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctg 1098
||||||||||||||| ||| ||||||||||||||| || |||| |||||| |||||||
Sbjct: 97 caggatggagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagctg 38
Query: 1099 ctcgcagtcctcggcgacggccgggacgg 1127
||||||||||||||| |||||||||||||
Sbjct: 37 ctcgcagtcctcggccacggccgggacgg 9
>gb|AV914553.1|AV914553 AV914553 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags6o20 5', mRNA sequence
Length = 515
Score = 293 bits (148), Expect = 7e-078
Identities = 337/400 (84%)
Strand = Plus / Minus
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||| || ||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct: 514 ttctcaaagtacctatcagggcaggtgaagcaccggataaccgcccgcagggttttgagg 455
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 454 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 395
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 394 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 335
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 334 tcatcatcaccgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgt 275
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 274 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 215
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 214 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 155
Query: 770 cggtcatggtacgcctgcttgaccgcaaagagctgcgcgg 809
||||||||||| |||||| |||| || |||||||||||||
Sbjct: 154 cggtcatggtaggcctgcctgacggcgaagagctgcgcgg 115
Score = 40.1 bits (20), Expect = 0.18
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 871 ctcgttcgccagcaccgcgtccctctccgcggggt 905
|||||| || ||||||||||||| | |||||||||
Sbjct: 51 ctcgttggcgagcaccgcgtcccgcnccgcggggt 17
>gb|BJ463409.1|BJ463409 BJ463409 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags27i13 5', mRNA sequence
Length = 468
Score = 293 bits (148), Expect = 7e-078
Identities = 337/400 (84%)
Strand = Plus / Minus
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||| || ||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct: 462 ttctcaaagtacctatcagggcaggtgaagcaccggataaccgcccgcagggttttgagg 403
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 402 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 343
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 342 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 283
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 282 tcatcatcaccgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgt 223
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 222 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 163
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 162 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 103
Query: 770 cggtcatggtacgcctgcttgaccgcaaagagctgcgcgg 809
||||||||||| |||||| |||| || |||||||||||||
Sbjct: 102 cggtcatggtaggcctgcctgacggcgaagagctgcgcgg 63
>gb|BQ459544.1|BQ459544 HA08M15r HA Hordeum vulgare subsp. vulgare cDNA clone HA08M15
5-PRIME, mRNA sequence
Length = 632
Score = 293 bits (148), Expect = 7e-078
Identities = 337/400 (84%)
Strand = Plus / Minus
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||| || ||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct: 453 ttctcaaagtacctatcagggcaggtgaagcaccggataaccgcccgcagggttttgagg 394
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 393 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 334
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 333 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 274
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 273 tcatcatcaccgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgt 214
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 213 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 154
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 153 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 94
Query: 770 cggtcatggtacgcctgcttgaccgcaaagagctgcgcgg 809
||||||||||| |||||| |||| || |||||||||||||
Sbjct: 93 cggtcatggtaggcctgcctgacggcgaagagctgcgcgg 54
Score = 75.8 bits (38), Expect = 3e-012
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 287 acactgtttctcttctgataagcctcctttatcagcttcaggtcgacctcggcgcgagta 346
|||||||| |||||||| || ||||| || |||||||||||||| ||||||||||| ||
Sbjct: 576 acactgttcctcttctggtatgcctctttgatcagcttcaggtccacctcggcgcgggtc 517
Query: 347 gttacgaccctggtgagg 364
|||| |||||| ||||||
Sbjct: 516 gttatgaccctagtgagg 499
>gb|BQ460413.1|BQ460413 HA09L02r HA Hordeum vulgare subsp. vulgare cDNA clone HA09L02
5-PRIME, mRNA sequence
Length = 551
Score = 293 bits (148), Expect = 7e-078
Identities = 337/400 (84%)
Strand = Plus / Minus
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||| || ||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct: 460 ttctcaaagtacctatcagggcaggtgaagcaccggataaccgcccgcagggttttgagg 401
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 400 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 341
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 340 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 281
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 280 tcatcatcaccgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgt 221
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 220 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 161
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 160 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 101
Query: 770 cggtcatggtacgcctgcttgaccgcaaagagctgcgcgg 809
||||||||||| |||||| |||| || |||||||||||||
Sbjct: 100 cggtcatggtaggcctgcctgacggcgaagagctgcgcgg 61
Score = 52.0 bits (26), Expect = 5e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 319 cagcttcaggtcgacctcggcgcgagtagttacgaccctggtgagg 364
|||||||||||| ||||||||||| || |||| |||||| ||||||
Sbjct: 551 cagcttcaggtccacctcggcgcgggtcgttatgaccctagtgagg 506
>gb|BU980869.1|BU980869 HA21O23r HA Hordeum vulgare subsp. vulgare cDNA clone HA21O23
5-PRIME, mRNA sequence
Length = 517
Score = 293 bits (148), Expect = 7e-078
Identities = 337/400 (84%)
Strand = Plus / Minus
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||| || ||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct: 480 ttctcaaagtacctatcagggcaggtgaagcaccggataaccgcccgcagggttttgagg 421
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 420 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 361
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 360 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 301
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 300 tcatcatcaccgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgt 241
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 240 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 181
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 180 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 121
Query: 770 cggtcatggtacgcctgcttgaccgcaaagagctgcgcgg 809
||||||||||| |||||| |||| || |||||||||||||
Sbjct: 120 cggtcatggtaggcctgcctgacggcgaagagctgcgcgg 81
>gb|BI957573.1|BI957573 HVSMEn0010D05f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0010D05f,
mRNA sequence
Length = 628
Score = 291 bits (147), Expect = 3e-077
Identities = 465/570 (81%), Gaps = 1/570 (0%)
Strand = Plus / Minus
Query: 584 atgatctcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttca 643
|||||||| ||||| | ||||||||| | | ||||| |||||| ||||||||||| |
Sbjct: 627 atgatctcatcatccccgtaagccttatgctcgatctgctcatgcagtattttggcctnt 568
Query: 644 gaatgagccaaagat-gtgttcacctctgggccatcatagcggtacgcactaacaagagg 702
||||| |||||| | ||||| |||||||| || ||||||||||| | || ||||| ||
Sbjct: 567 gaatgtgccaaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtgg 508
Query: 703 cactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcg 762
||| || ||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||
Sbjct: 507 caccaagagcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcg 448
Query: 763 cttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgca 822
||| || ||||||||||| |||||| |||| || ||||||||||||| ||||| |||
Sbjct: 447 cttgaagcggtcatggtaggcctgcctgacggcgaagagctgcgcggagccgcgcgagca 388
Query: 823 cgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcctcctcgttcgccag 882
|||||||| || ||| || || |||||||| | |||||| || |||||| || ||
Sbjct: 387 ggcgatctcgacgagcacggggttcccggggtgccacttcttggcggtctcgttggcgag 328
Query: 883 caccgcgtccctctccgcggggtccagcgtccacaggatcaccgccctctcgaacttgcc 942
||||||||||| |||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct: 327 caccgcgtcccgctccgcggggtccagcgtccacaggatcacagccctctcgaagtcgcc 268
Query: 943 gtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctcggcgtagccgcg 1002
|||||||||| || ||||||||||||| ||||| | |||||||||
Sbjct: 267 tgagatctcgtcggtgatgctccggagcagctcctcgccgtaggtgtcggcgtagtgctt 208
Query: 1003 gcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagatgatcagcttctc 1062
|||||| ||||||||||||||||||| |||||| |||||||||||||||| ||| |||
Sbjct: 207 gcggatggcgcggcgctgcgcggcgtcccggtggcccaggatggagatgatgagcgcctc 148
Query: 1063 gttggtgccccaaccttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgg 1122
||| |||||||| |||| |||||||||| |||| | |||||||| ||||||| ||| ||
Sbjct: 147 gttcgtgccccacccttggaaggccttgcggaggttgtcgcagtcgtcggcgagggcggg 88
Query: 1123 gacggaggaaggaacggtgagcgtcgccat 1152
|||| ||| || || |||||||||||||
Sbjct: 87 gacgttggaggggaccttgagcgtcgccat 58
>gb|BI959597.1|BI959597 HVSMEn0020F15f Hordeum vulgare rachis EST library HVcDNA0015 (normal)
Hordeum vulgare subsp. vulgare cDNA clone HVSMEn0020F15f,
mRNA sequence
Length = 683
Score = 291 bits (147), Expect = 3e-077
Identities = 258/295 (87%)
Strand = Plus / Minus
Query: 859 cttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacag 918
|||||| ||||||||||| |||| ||||||||||| |||||| ||||||||||||||| |
Sbjct: 357 cttcttggcctcctcgttggccaacaccgcgtcccgctccgccgggtccagcgtccactg 298
Query: 919 gatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctcctt 978
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 297 gatcaccgccctctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctc 238
Query: 979 cccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggc 1038
||||| || ||||||||| |||||| ||||||||||||||||||| |||| ||||
Sbjct: 237 gccgtaggcgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggcgggc 178
Query: 1039 caggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctg 1098
||||||||||||||| ||| ||||||||||||||| || |||| |||||| |||||||
Sbjct: 177 caggatggagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagctg 118
Query: 1099 ctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
||||||||||||||| ||||||||||||| || || |||| |||||||||||||
Sbjct: 117 ctcgcagtcctcggccacggccgggacggcggcggggacggagagcgtcgccatt 63
>gb|BU979145.1|BU979145 HA15E14r HA Hordeum vulgare subsp. vulgare cDNA clone HA15E14
5-PRIME, mRNA sequence
Length = 434
Score = 289 bits (146), Expect = 1e-076
Identities = 332/394 (84%)
Strand = Plus / Minus
Query: 416 aagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaagaaactca 475
||||| || ||||||||||||||||||||||| | ||||||||| ||| || ||||||
Sbjct: 432 aagtacctatcagggcaggtgaagcaccggataaccgcccgcagggttttgaggaactca 373
Query: 476 tccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttgtagcta 535
|||||||||||||| |||||||||||| |||||| ||| || || |||||| ||
Sbjct: 372 tccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattgtagtta 313
Query: 536 ttgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatctcctca 595
|||| ||||||||| |||||||||||||||| |||||||| ||||| |||||||| |||
Sbjct: 312 ttgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatctcatca 253
Query: 596 tcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatgagccaaa 655
|||| ||||||||| | | |||||||||||| ||||||||||| || ||||| |||||
Sbjct: 252 tcaccgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgtgccaac 193
Query: 656 gatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaaagcttt 715
|||||| |||||||| || ||||||||||| | || ||||| ||||| || |||||
Sbjct: 192 cttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaagagcttg 133
Query: 716 cggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtca 775
||||||||||||||||| ||||| || ||||||||||||||||| ||||| || ||||||
Sbjct: 132 cggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaagcggtca 73
Query: 776 tggtacgcctgcttgaccgcaaagagctgcgcgg 809
||||| |||||| |||| || |||||||||||||
Sbjct: 72 tggtaggcctgcctgacggcgaagagctgcgcgg 39
>gb|CK123368.1|CK123368 BES1824103j21 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010J213 5-PRIME, mRNA sequence
Length = 545
Score = 287 bits (145), Expect = 5e-076
Identities = 336/400 (84%)
Strand = Plus / Minus
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||| || ||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct: 470 ttctcaaagtacctatcagggcaggtgaagcaccggataaccgcccgcagggttttgagg 411
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 410 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 351
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 350 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 291
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| |||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 290 tcatcatcancgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgt 231
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 230 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 171
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 170 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 111
Query: 770 cggtcatggtacgcctgcttgaccgcaaagagctgcgcgg 809
||||||||||| |||||| |||| || |||||||||||||
Sbjct: 110 cggtcatggtaggcctgcctgacggcgaagagctgcgcgg 71
>gb|CA020774.1|CA020774 HZ37K18r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ37K18
5-PRIME, mRNA sequence
Length = 618
Score = 285 bits (144), Expect = 2e-075
Identities = 429/524 (81%)
Strand = Plus / Minus
Query: 629 agtattttggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtac 688
||||||||||| || ||||| ||||| |||||| |||||||| || |||||||||||
Sbjct: 614 agtattttggcctctgaatgtgccaaccttgtgttgacctctggtccctcatagcggtat 555
Query: 689 gcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcc 748
| || ||||| ||||| || ||||| ||||||||||||||||| ||||| || ||||||
Sbjct: 554 gagcttacaagtggcaccaagagcttgcggaagtcgccggtgacgtgcgcagcgacgtcc 495
Query: 749 tcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcg 808
||||||||||| ||||| || ||||||||||| |||||| |||| || ||||||||||||
Sbjct: 494 tcctcgagcgagcgcttgaagcggtcatggtaggcctgcctgacggcgaagagctgcgcg 435
Query: 809 ggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcc 868
| ||||| ||| |||||||| || ||| || || || ||||| | |||||| ||
Sbjct: 434 gagccgcgcgagcaggcgatctcgacgagcacggggttccccgggtgccacttcttggcg 375
Query: 869 tcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgcc 928
|||||| || ||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 374 gtctcgttggcgagcaccgcgtcccgctccgcggggtccagcgtccacaggatcacagcc 315
Query: 929 ctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcc 988
|||||||| | ||| |||||||||| || ||||||||||||| ||||| |
Sbjct: 314 ctctcgaagtcgcctgagatctcgtcggtgatgctccggagcagctcctcgccgtaggtg 255
Query: 989 tcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggag 1048
||||||||| |||||| ||||||||||||||||||| ||||||| |||||||||||
Sbjct: 254 tcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtggcccaggatggag 195
Query: 1049 atgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcagtcc 1108
||||| ||| |||||| |||||||| |||| |||||||||| |||| | ||||||||
Sbjct: 194 atgatgagcgcctcgttcgtgccccacccttggaaggccttgcggaggttgtcgcagtcg 135
Query: 1109 tcggcgacggccgggacggaggaaggaacggtgagcgtcgccat 1152
||||||| ||| |||||| ||| || || |||||||||||||
Sbjct: 134 tcggcgagggcggggacgttggaggggaccttgagcgtcgccat 91
>gb|AL450690.1|AL450690 AL450690 Hordeum vulgare Barke etiolated leaves Hordeum vulgare
subsp. vulgare cDNA clone HK03M19u 5', mRNA sequence
Length = 657
Score = 283 bits (143), Expect = 7e-075
Identities = 435/531 (81%), Gaps = 1/531 (0%)
Strand = Plus / Minus
Query: 623 tcatgaagtattttggcttcagaatgagccaaagat-gtgttcacctctgggccatcata 681
||||| ||||||||||| || ||||| |||||| | ||||| |||||||| || |||||
Sbjct: 619 tcatgcagtattttggcctctgaatgtgccaaaccttgtgttgacctctggtccctcata 560
Query: 682 gcggtacgcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggc 741
|||||| | || ||||| ||||| || ||||| ||||||||||||||||| ||||| ||
Sbjct: 559 gcggtatgagcttacaagtggcaccaagagcttgcggaagtcgccggtgacgtgcgcagc 500
Query: 742 aacgtcctcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagag 801
||||||||||||||||| ||||| || ||||||||||| |||||| |||| || |||||
Sbjct: 499 gacgtcctcctcgagcgagcgcttgaagcggtcatggtaggcctgcctgacggcgaagag 440
Query: 802 ctgcgcgggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctctt 861
|||||||| ||||| ||| |||||||| || ||| || || || ||||| | |||
Sbjct: 439 ctgcgcggagccgcgcgagcaggcgatctcgacgagcacggggttccccgggtgccactt 380
Query: 862 cttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggat 921
||| || |||||| || ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 379 cttggcggtctcgttggcgagcaccgcgtcccgctccgcggggtccagcgtccacaggat 320
Query: 922 caccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttccc 981
||| ||||||||||| | ||| |||||||||| || ||||||||||||| ||
Sbjct: 319 cacagccctctcgaagtcgcctgagatctcgtcggtgatgctccggagcagctcctcgcc 260
Query: 982 gtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccag 1041
||| | ||||||||| |||||| ||||||||||||||||||| ||||||| ||||
Sbjct: 259 gtaggtgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtggcccag 200
Query: 1042 gatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctc 1101
|||||||||||| ||| |||||| |||||||| |||| |||||||||| |||| | ||
Sbjct: 199 gatggagatgatgagcgcctcgttcgtgccccacccttggaaggccttgcggaggttgtc 140
Query: 1102 gcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccat 1152
|||||| ||||||| ||| |||||| ||| || || |||||||||||||
Sbjct: 139 gcagtcgtcggcgagggcggggacgttggaggggaccttgagcgtcgccat 89
>gb|AV916100.1|AV916100 AV916100 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1h08 5', mRNA sequence
Length = 598
Score = 280 bits (141), Expect = 1e-073
Identities = 337/401 (84%), Gaps = 1/401 (0%)
Strand = Plus / Minus
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||| || ||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct: 433 ttctcaaagtacctatcagggcaggtgaagcaccggataaccgcccgcagggttttgagg 374
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 373 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 314
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 313 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 254
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 253 tcatcatcaccgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgt 194
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 193 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 134
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 133 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 74
Query: 770 cggt-catggtacgcctgcttgaccgcaaagagctgcgcgg 809
|||| ||||||| |||||| |||| || |||||||||||||
Sbjct: 73 cggtncatggtaggcctgcctgacggcgaagagctgcgcgg 33
Score = 75.8 bits (38), Expect = 3e-012
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 287 acactgtttctcttctgataagcctcctttatcagcttcaggtcgacctcggcgcgagta 346
|||||||| |||||||| || ||||| || |||||||||||||| ||||||||||| ||
Sbjct: 556 acactgttcctcttctggtatgcctctttgatcagcttcaggtccacctcggcgcgggtc 497
Query: 347 gttacgaccctggtgagg 364
|||| |||||| ||||||
Sbjct: 496 gttatgaccctagtgagg 479
>gb|BU979996.1|BU979996 HA18C16r HA Hordeum vulgare subsp. vulgare cDNA clone HA18C16
5-PRIME, mRNA sequence
Length = 365
Score = 278 bits (140), Expect = 4e-073
Identities = 251/288 (87%)
Strand = Plus / Minus
Query: 866 gcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcacc 925
||||||||||| ||||||||||||| || |||||| ||||||||||||||| ||||||||
Sbjct: 364 gcctcctcgttggccagcaccgcgttccgctccgccgggtccagcgtccactggatcacc 305
Query: 926 gccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtac 985
|||||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct: 304 gccctctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctcgccgtag 245
Query: 986 gcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatg 1045
|| ||||||||| |||||| |||||||||||| |||||| ||||||||||||||||
Sbjct: 244 gcgtcggcgtagtgcttgcggatggcgcggcgctgcacggcgtcgcggtgggccaggatg 185
Query: 1046 gagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcag 1105
|||||||| ||| ||||||||||||||| || |||| |||||| ||||||||||||||
Sbjct: 184 gagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagctgctcgcag 125
Query: 1106 tcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
|||||||| |||||||||||| || || |||| |||||||||||||
Sbjct: 124 tcctcggccacggccgggacgacggcggggacggagagcgtcgccatt 77
>gb|AV915427.1|AV915427 AV915427 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags14f21 5', mRNA sequence
Length = 588
Score = 276 bits (139), Expect = 2e-072
Identities = 322/383 (84%)
Strand = Plus / Minus
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||| || ||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct: 401 ttctcaaagtacctatcagggcaggtgaagcaccggataaccgcccgcagggttttgagg 342
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 341 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 282
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 281 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 222
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 221 tcatcatcaccgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgt 162
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 161 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 102
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 101 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 42
Query: 770 cggtcatggtacgcctgcttgac 792
||||||||||| |||||| ||||
Sbjct: 41 cggtcatggtaggcctgcctgac 19
Score = 61.9 bits (31), Expect = 5e-008
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Minus
Query: 287 acactgtttctcttctgataagcctcctttatcagcttcaggtcgacctc-ggcgcgagt 345
|||||||| |||||||| || ||||| || |||||||||||||| ||||| |||||| ||
Sbjct: 525 acactgttcctcttctggtatgcctctttgatcagcttcaggtccacctcgggcgcgggt 466
Query: 346 agttacgaccctggtgagg 364
|||| |||||| ||||||
Sbjct: 465 cgttatgaccctagtgagg 447
>gb|CA023591.1|CA023591 HZ46L22r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ46L22
5-PRIME, mRNA sequence
Length = 270
Score = 276 bits (139), Expect = 2e-072
Identities = 226/255 (88%)
Strand = Plus / Minus
Query: 859 cttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacag 918
|||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||| |
Sbjct: 255 cttcttggcctcctcgttggccagcaccgcgtcccgctccgccgggtccagcgtccactg 196
Query: 919 gatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctcctt 978
||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct: 195 gatcaccgccctctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctc 136
Query: 979 cccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggc 1038
||||| || ||||||||| |||||| ||||||||||||||||||| |||||||||
Sbjct: 135 gccgtaggcgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtgggc 76
Query: 1039 caggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctg 1098
||||||||||||||| ||| ||||||||||||||| || |||| |||||| |||||||
Sbjct: 75 caggatggagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagctg 16
Query: 1099 ctcgcagtcctcggc 1113
|||||||||||||||
Sbjct: 15 ctcgcagtcctcggc 1
>gb|BF253867.2|BF253867 HVSMEf0002F12f Hordeum vulgare seedling root EST library HVcDNA0007
(Etiolated and unstressed) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEf0002F12f, mRNA sequence
Length = 862
Score = 272 bits (137), Expect = 3e-071
Identities = 332/397 (83%)
Strand = Plus / Minus
Query: 407 actttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaa 466
||||| || ||||| || ||||||||||||||||||||||| | |||||| || |||
Sbjct: 622 actttttcaaagtacctatcagggcaggtgaagcaccggataaccgcccgaagggttttg 563
Query: 467 agaaactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatcc 526
|| |||||||||||||||||||| |||||||||||| |||||| ||| || ||
Sbjct: 562 aggaactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtca 503
Query: 527 ttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatg 586
|||||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| |||
Sbjct: 502 ttgtagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatg 443
Query: 587 atctcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaa 646
||||| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||
Sbjct: 442 atctcatcatcaccgtaagccttatgctcgatcttctcatgcagtattttggcctctgaa 383
Query: 647 tgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcact 706
|| ||||| |||||| |||||||| || ||||||||||| | || ||||| |||||
Sbjct: 382 tgtgccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcacc 323
Query: 707 aaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgctta 766
|| ||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||
Sbjct: 322 aagagcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttg 263
Query: 767 aaccggtcatggtacgcctgcttgaccgcaaagagct 803
|| ||||||||||| |||||| |||| || |||||||
Sbjct: 262 aagcggtcatggtaggcctgcctgacggcgaagagct 226
Score = 123 bits (62), Expect = 2e-026
Identities = 128/150 (85%)
Strand = Plus / Minus
Query: 1003 gcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagatgatcagcttctc 1062
|||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||| |||
Sbjct: 224 gcggatggcgcggcgctgcgcggcgtcgcggtggcccaggatggagatgatgagcgcctc 165
Query: 1063 gttggtgccccaaccttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgg 1122
||| |||||||| |||| |||||||||| |||| | |||||||| ||||||| ||| ||
Sbjct: 164 gttcgtgccccacccttggaaggccttgcggaggttgtcgcagtcgtcggcgagggcggg 105
Query: 1123 gacggaggaaggaacggtgagcgtcgccat 1152
|||| ||| || || |||||||||||||
Sbjct: 104 gacgttggaggggaccttgagcgtcgccat 75
Score = 58.0 bits (29), Expect = 8e-007
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 308 gcctcctttatcagcttcaggtcgacctcggcgcgagtagttacgaccctggtgagg 364
||||| || |||||||||||||| ||||||||||| || |||| |||||| ||||||
Sbjct: 721 gcctctttgatcagcttcaggtccacctcggcgcgggtcgttatgaccctagtgagg 665
>gb|BF617024.2|BF617024 HVSMEc0014F02f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0014F02f, mRNA sequence
Length = 827
Score = 270 bits (136), Expect = 1e-070
Identities = 250/288 (86%)
Strand = Plus / Minus
Query: 866 gcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcacc 925
||||||||||| |||||||||| || || ||||| |||||||| |||||| ||||||||
Sbjct: 339 gcctcctcgttggccagcaccgggttccggtccgccgggtccagggtccactggatcacc 280
Query: 926 gccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtac 985
|||||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct: 279 gccctctcgaacttgccgtggatctcgtcggtgatggagcggagcagctcctcgccgtag 220
Query: 986 gcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatg 1045
|| ||||||||| |||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 219 gcgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtgggccaggatg 160
Query: 1046 gagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcag 1105
|||||||| ||| ||||||||||||||| || |||| |||||| ||||||||||||||
Sbjct: 159 gagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagctgctcgcag 100
Query: 1106 tcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
|||||||| ||||||||||||| || || |||| |||||||||||||
Sbjct: 99 tcctcggccacggccgggacggcggcggggacggagagcgtcgccatt 52
>gb|BU994896.1|BU994896 HM08I11r HM Hordeum vulgare subsp. vulgare cDNA clone HM08I11
5-PRIME, mRNA sequence
Length = 568
Score = 260 bits (131), Expect = 1e-067
Identities = 389/475 (81%)
Strand = Plus / Minus
Query: 678 catagcggtacgcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcg 737
|||||||||| | || ||||| ||||| || ||||| ||||||||||||||||| ||||
Sbjct: 568 catagcggtatgagcttacaagtggcaccaagagcttgcggaagtcgccggtgacgtgcg 509
Query: 738 cggcaacgtcctcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaa 797
| || ||||||||||||||||| ||||| || ||||||||||| |||||| |||| || |
Sbjct: 508 cagcgacgtcctcctcgagcgagcgcttgaagcggtcatggtaggcctgcctgacggcga 449
Query: 798 agagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggc 857
|||||||||||| ||||| ||| |||||||| || ||| || || || ||||| |
Sbjct: 448 agagctgcgcggagccgcgcgagcaggcgatctcgacgagcacggggttccccgggtgcc 389
Query: 858 tcttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccaca 917
|||||| || |||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct: 388 acttcttggcggtctcgttggcgagcaccgcgtcccgctccgcggggtccagcgtccaca 329
Query: 918 ggatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctcct 977
||||||| ||||||||||| | ||| |||||||||| || |||||||||||||
Sbjct: 328 ggatcacagccctctcgaagtcgcctgagatctcgtcggtgatgctccggagcagctcct 269
Query: 978 tcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtggg 1037
||||| | ||||||||| |||||| ||||||||||||||||||| |||||||
Sbjct: 268 cgccgtaggtgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtggc 209
Query: 1038 ccaggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagct 1097
|||||||||||||||| ||| |||||| |||||||| |||| |||||||||| |||| |
Sbjct: 208 ccaggatggagatgatgagcgcctcgttcgtgccccacccttggaaggccttgcggaggt 149
Query: 1098 gctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccat 1152
|||||||| ||||||| ||| |||||| ||| || || |||||||||||||
Sbjct: 148 tgtcgcagtcgtcggcgagggcggggacgttggaggggaccttgagcgtcgccat 94
>gb|CA022440.1|CA022440 HZ43D05r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ43D05
5-PRIME, mRNA sequence
Length = 575
Score = 258 bits (130), Expect = 4e-067
Identities = 376/458 (82%)
Strand = Plus / Minus
Query: 695 acaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcg 754
||||| ||||| || ||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct: 567 acaagtggcaccaagagcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcg 508
Query: 755 agcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtg 814
||||| ||||| || ||||||||||| |||||| |||| || ||||||||||||| |
Sbjct: 507 agcgagcgcttgaagcggtcatggtaggcctgcctgacggcgaagagctgcgcggagccg 448
Query: 815 cgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcctcctcg 874
|||| ||| |||||||| || ||| || || || ||||| | |||||| || ||||
Sbjct: 447 cgcgagcaggcgatctcgacgagcacggggttccccgggtgccacttcttggcggtctcg 388
Query: 875 ttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgccctctcg 934
|| || ||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 387 ttggcgagcaccgcgtcccgctccgcggggtccagcgtccacaggatcacagccctctcg 328
Query: 935 aacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctcggcg 994
|| | ||| |||||||||| || ||||||||||||| ||||| | ||||||
Sbjct: 327 aagtcgcctgagatctcgtcggtgatgctccggagcagctcctcgccgtaggtgtcggcg 268
Query: 995 tagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagatgatc 1054
||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 267 tagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtggcccaggatggagatgatg 208
Query: 1055 agcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcagtcctcggcg 1114
||| |||||| |||||||| |||| |||||||||| |||| | |||||||| ||||||
Sbjct: 207 agcgcctcgttcgtgccccacccttggaaggccttgcggaggttgtcgcagtcgtcggcg 148
Query: 1115 acggccgggacggaggaaggaacggtgagcgtcgccat 1152
| ||| |||||| ||| || || |||||||||||||
Sbjct: 147 agggcggggacgttggaggggaccttgagcgtcgccat 110
>gb|AV926474.1|AV926474 AV926474 K. Sato unpublished cDNA library, cv. Haruna Nijo second
leaf stage seedling leaves Hordeum vulgare subsp. vulgare
cDNA clone basd19i03 5', mRNA sequence
Length = 546
Score = 254 bits (128), Expect = 6e-066
Identities = 356/432 (82%)
Strand = Plus / Minus
Query: 695 acaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcg 754
||||| ||||| || ||||| ||||||||||||||||| ||||| || ||||||||||||
Sbjct: 534 acaagtggcaccaagagcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcg 475
Query: 755 agcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtg 814
||||| ||||| || ||||||||||| |||||| |||| || ||||||||||||| |
Sbjct: 474 agcgagcgcttgaagcggtcatggtaggcctgcctgacggcgaagagctgcgcggagccg 415
Query: 815 cgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttcttcgcctcctcg 874
|||| ||| |||||||| || ||| || || || ||||| | |||||| || ||||
Sbjct: 414 cgcgagcaggcgatctcgacgagcacggggttccccgggtgccacttcttggcggtctcg 355
Query: 875 ttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcaccgccctctcg 934
|| || ||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 354 ttggcgagcaccgcgtcccgctccgcggggtccagcgtccacaggatcacggccctctcg 295
Query: 935 aacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtacgcctcggcg 994
|| | ||| |||||||||| || ||||||||||||| ||||| | ||||||
Sbjct: 294 aagtcgcctgagatctcgtcggtgatgctccggagcagctcctcgccgtaggtgtcggcg 235
Query: 995 tagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagatgatc 1054
||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 234 tagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtggcccaggatggagatgatg 175
Query: 1055 agcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcagtcctcggcg 1114
||| |||||| |||||||| |||| |||||||||| |||| | |||||||| ||||||
Sbjct: 174 agcgcctcgttcgtgccccacccttggaaggccttgcggaggttgtcgcagtcgtcggcg 115
Query: 1115 acggccgggacg 1126
| ||| ||||||
Sbjct: 114 agggcggggacg 103
>gb|AL507314.1|AL507314 AL507314 Hordeum vulgare Barke developing caryopsis (3.-15.DAP)
Hordeum vulgare subsp. vulgare cDNA clone HY01N11V 5',
mRNA sequence
Length = 568
Score = 246 bits (124), Expect = 2e-063
Identities = 363/443 (81%)
Strand = Plus / Minus
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 520 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 461
Query: 770 cggtcatggtacgcctgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatc 829
||||||||||| |||||| |||| || ||||||||||||| ||||| ||| ||||||
Sbjct: 460 cggtcatggtaggcctgcctgacggcgaagagctgcgcggagccgcgcgagcaggcgatc 401
Query: 830 tccaccagcgcgcggccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcg 889
|| || ||| || || || ||||| | |||||| || |||| | || |||||||||
Sbjct: 400 tcgacgagcacggggttccccgggtgccacttcttggcggtctcgntggcgagcaccgcg 341
Query: 890 tccctctccgcggggtccagcgtccacaggatcaccgccctctcgaacttgccgtggatc 949
|||| |||||||||||||||||||||||||||||| ||||||||||| | ||| ||||
Sbjct: 340 tcccgctccgcggggtccagcgtccacaggatcacagccctctcgaagtcgcctgagatc 281
Query: 950 tcgtcgccgagagcgcggagcagctccttcccgtacgcctcggcgtagccgcggcggatc 1009
|||||| || ||||||||||||| ||||| | ||||||||| ||||||
Sbjct: 280 tcgtcggtgatgctccggagcagctcctcgccgtaggtgtcggcgtagtgcttgcggatg 221
Query: 1010 gcgcggcgctgcgcggcgttgcggtgggccaggatggagatgatcagcttctcgttggtg 1069
||||||||||||||||||| ||||||| |||||||||||||||| ||| |||||| |||
Sbjct: 220 gcgcggcgctgcgcggcgtcgcggtggcccaggatggagatgatgagcgcctcgttcgtg 161
Query: 1070 ccccaaccttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgggacggag 1129
||||| |||| |||||||||| |||| | |||||||| ||||||| ||| |||||| |
Sbjct: 160 ccccacccttggaaggccttgcggaggttgtcgcagtcgtcggcgagggcggggacgttg 101
Query: 1130 gaaggaacggtgagcgtcgccat 1152
|| || || |||||||||||||
Sbjct: 100 gaggggaccttgagcgtcgccat 78
>gb|CA020204.1|CA020204 HV14K06r HV Hordeum vulgare subsp. vulgare cDNA clone HV14K06
5-PRIME, mRNA sequence
Length = 580
Score = 236 bits (119), Expect = 1e-060
Identities = 272/323 (84%)
Strand = Plus / Minus
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 580 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 521
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 520 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 461
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 460 tcatcatcaccgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgt 401
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 400 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 341
Query: 710 agctttcggaagtcgccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaac 769
||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||| ||
Sbjct: 340 agcttgcggaagtcgccggtgacgtgcgcagcgacgtcctcctcgagcgagcgcttgaag 281
Query: 770 cggtcatggtacgcctgcttgac 792
||||||||||| |||||| ||||
Sbjct: 280 cggtcatggtaggcctgcctgac 258
Score = 123 bits (62), Expect = 2e-026
Identities = 128/150 (85%)
Strand = Plus / Minus
Query: 1003 gcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatggagatgatcagcttctc 1062
|||||| ||||||||||||||||||| ||||||| |||||||||||||||| ||| |||
Sbjct: 245 gcggatggcgcggcgctgcgcggcgtcgcggtggcccaggatggagatgatgagcgcctc 186
Query: 1063 gttggtgccccaaccttcgaaggccttgtggagctgctcgcagtcctcggcgacggccgg 1122
||| |||||||| |||| |||||||||| |||| | |||||||| ||||||| ||| ||
Sbjct: 185 gttcgtgccccacccttggaaggccttgcggaggttgtcgcagtcgtcggcgagggcggg 126
Query: 1123 gacggaggaaggaacggtgagcgtcgccat 1152
|||| ||| || || |||||||||||||
Sbjct: 125 gacgttggaggggaccttgagcgtcgccat 96
>gb|AV914858.1|AV914858 AV914858 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags8j17 5', mRNA sequence
Length = 420
Score = 234 bits (118), Expect = 6e-060
Identities = 296/354 (83%), Gaps = 1/354 (0%)
Strand = Plus / Minus
Query: 389 ccaagagccagtcgaatgactttctcgaagtatctgtcagggcaggtgaagcaccggatg 448
|||||||||| || ||||| ||||| ||||||||||| ||||| ||||| |||| |||
Sbjct: 354 ccaagagccaaccggatgaccttctcaaagtatctgtcggggcaagtgaaacaccttatg 295
Query: 449 atcgcccgcagtgttgaaagaaactcatccttggggtcagctttcagatccttgttgatt 508
||||||| ||| || || || ||||| |||||||| || | || || |||||| ||||
Sbjct: 294 atcgccctcagggtcgagaggaactcgtccttgggatcttccttgaggtccttggtgata 235
Query: 509 gcatgagtgaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgt 568
| ||| | |||||||| |||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 234 gggtgactaaactgatcattgtagctgttgaatgttgcaagtagctgagctttgctcctt 175
Query: 569 gtggtgagaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatga 628
|| |||||||| || | || ||| ||||||||||| ||||||| ||||||| ||||
Sbjct: 174 gtagtgagaatcctgacgacctcatcatcactgtaggccttctcgctgatcttcgcatgg 115
Query: 629 agtattttggcttcagaatgagccaaagatgtgttcacct-ctgggccatcatagcggta 687
||||| ||||||||||| || ||||| || || ||||||| | |||||||| ||||||||
Sbjct: 114 agtatcttggcttcagagtgcgccaacgacgtattcacctaccgggccatcgtagcggta 55
Query: 688 cgcactaacaagaggcactaaaagctttcggaagtcgccggtgacatgcgcggc 741
||| || ||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct: 54 cgcgcttacaagaggcaccaaaagcttgcggaagtcgccggtgacgtgcgcggc 1
>gb|BG300247.1|BG300247 HVSMEb0011L19f Hordeum vulgare seedling shoot EST library HVcDNA0002
(Dehydration stress) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEb0011L19f, mRNA sequence
Length = 540
Score = 230 bits (116), Expect = 9e-059
Identities = 245/288 (85%)
Strand = Plus / Minus
Query: 866 gcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatcacc 925
||||||| ||| |||||||||| ||||| ||||| ||||||||||||||| ||||||||
Sbjct: 344 gcctccttgttggccagcaccgagtcccggtccgccgggtccagcgtccactggatcacc 285
Query: 926 gccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccgtac 985
||||||||||||||||||||||| | |||| || | |||||||||||||| |||||
Sbjct: 284 gccctctcgaacttgccgtggattttgtcggtgatggagcggagcagctcctctccgtag 225
Query: 986 gcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccaggatg 1045
|| ||||||||| ||||| || ||||||||| |||||| ||||||||||||||||
Sbjct: 224 gcgtcggcgtagtgctttcggatggcccggcgctgcacggcgtcgcggtgggccaggatg 165
Query: 1046 gagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcgcag 1105
|||||||| ||| ||||||||||||||| || |||| ||| || ||||||||||||||
Sbjct: 164 gagatgatgagccgctcgttggtgccccacccggcgaacgccatgcggagctgctcgcag 105
Query: 1106 tcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
|||||||| ||||||||||||| || || |||| |||||||||||||
Sbjct: 104 tcctcggccacggccgggacggcggcggggacggagagcgtcgccatt 57
>gb|BG309045.2|BG309045 HVSMEc0001K22f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0001K22f, mRNA sequence
Length = 862
Score = 220 bits (111), Expect = 9e-056
Identities = 487/610 (79%), Gaps = 3/610 (0%)
Strand = Plus / Minus
Query: 545 gcaagtagctgagctttgctccgtgtggtgagaattctaatgatctcctcatcactgtaa 604
||||| |||| ||||||||||| ||||| || ||||||||| ||| ||||| | ||||
Sbjct: 683 gcaagcagctaagctttgctcctggtggtaaggattctaatgtcctcatcatccccgtaa 624
Query: 605 gccttcttatggatcttctcatgaagtattttggcttcagaatgagccaaagatgtgttc 664
|||| | | ||||||||| ||||||| ||| || ||||| ||||| ||||||
Sbjct: 623 cccttaggctcgttcttctcatccagtattt-ggcctctgaatgtgccaaccttgtgttg 565
Query: 665 acctctgggccatcatagcggtacgcactaacaagaggcactaaaagctttcggaagtcg 724
|||||||| || ||||||||||| | || |||| ||||| || ||||| || ||||||
Sbjct: 564 acctctggtccctcatagcggtatgagcttccaagtggcaccaagagcttgcgcaagtcg 505
Query: 725 ccggtgacatgcgcggcaacgtcctcctcgagcgatcgcttaaaccggtcatggtacgcc 784
||||| || ||||| | | |||||||||||||||| ||||| || ||||||||||| |||
Sbjct: 504 ccggtcacgtgcgcaggaccgtcctcctcgagcgagcgcttgaagcggtcatggtaggcc 445
Query: 785 tgcttgaccgcaaagagctgcgcgggcgtgcgcgcgcacgcgatctccaccagcgcgcgg 844
||| |||| || ||||||||||||| | ||||| ||| |||||||| || ||| || ||
Sbjct: 444 tgcctgacggcgaagagctgcgcggacccgcgcgagcaggcgatctcgacgagcacgggg 385
Query: 845 ccgccggggtggctcttcttcgcctcctcgttcgccagcaccgcgtccctctccgcgggg 904
|||||||| | |||||| || |||||| || ||||||||||||| ||||||||||
Sbjct: 384 ttcccggggtgccacttcttggcggtctcgttggcgagcaccgcgtcccgctccgcgggg 325
Query: 905 tccagcgtccacaggatcaccgccctctcgaacttgccgtggatctcgtcgccgagagcg 964
|||||||||||||||||||| ||||||||||| | ||| |||||||||| ||
Sbjct: 324 tccagcgtccacaggatcacagccctctcgaagtcgcctgagatctcgtcggtgatgctc 265
Query: 965 cggagcagctccttcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcg 1024
||||||||||||| ||||| | ||||||||| |||||| |||||||||||||||
Sbjct: 264 cggagcagctcctcgccgtaggtgtcggcgtagtgcttgcggatggcgcggcgctgcgcg 205
Query: 1025 gcgttgcggtgggccaggatggagatg--atcagcttctcgttggtgccccaaccttcga 1082
|||| ||||||| |||||||||||||| | | |||||| |||||||| |||| ||
Sbjct: 204 gcgtcgcggtggcccaggatggagatgcaccccccccctcgttcgtgccccacccttgga 145
Query: 1083 aggccttgtggagctgctcgcagtcctcggcgacggccgggacggaggaaggaacggtga 1142
|||||||| |||| | |||||||| ||||||| ||| |||||| ||| || || |||
Sbjct: 144 aggccttgcggaggttgtcgcagtcgtcggcgagggcggggacgttggaggggaccttga 85
Query: 1143 gcgtcgccat 1152
||||||||||
Sbjct: 84 gcgtcgccat 75
>gb|AV916113.1|AV916113 AV916113 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags1i11 5', mRNA sequence
Length = 715
Score = 220 bits (111), Expect = 9e-056
Identities = 424/523 (81%), Gaps = 4/523 (0%)
Strand = Plus / Minus
Query: 227 gcaagcataatatcctcataatctctagttgtatctttggccacagcacgctccagcggc 286
|||||||| ||||| ||||| ||||| ||||| || |||| ||||| |||||| ||
Sbjct: 538 gcaagcatcatatcttcatagtctctggttgtgtccttggaaacagccttctccaggggg 479
Query: 287 acactgtttctcttctgataagcctcctttatcagcttcaggtcgacctcggcgcgagta 346
|| ||||| |||||||| || ||||||||||||| ||||||||| |||||||| |||||
Sbjct: 478 acgctgttcctcttctggtacgcctcctttatcaccttcaggtccacctcggcacgagtg 419
Query: 347 gttacgaccctggtgaggtcatcctcatcagtgcccatgcctccaagagccagtcgaatg 406
|||| ||||| || ||| | ||| || || || | || |||||||||| || |||
Sbjct: 418 gttatcaccctagtaagggtgtgctcgtctgtaccgacaccaccaagagccaaccggatg 359
Query: 407 actttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaa 466
|| ||||| ||||||||||| ||||| ||||| |||| |||||||||| ||| || ||
Sbjct: 358 accttctcaaagtatctgtcggggcaagtgaaacaccttatgatcgccctcagggtcgag 299
Query: 467 agaaactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatcc 526
|| ||||| |||||||| || | || || |||||| |||| | ||| | ||||||||
Sbjct: 298 aggaactcgtccttgggatcttccttgaggtccttggtgatagggtgactaaactgatca 239
Query: 527 ttgtagctattgaatgttgcaagtagctgagctttgct-ccgtgtggtgagaattctaat 585
|||||||| ||||||||||||||||||||||||||||| || ||| |||||||| || |
Sbjct: 238 ttgtagctgttgaatgttgcaagtagctgagctttgctnccttgtagtgagaatcctgac 179
Query: 586 gatctcctcatcactgtaagcctt-cttatggatcttctcatgaagtattttggcttcag 644
|| ||| ||||||||||| ||||| || ||||||| |||| ||||| ||||||||||
Sbjct: 178 gacctcatcatcactgtaggccttnctcgctgatcttcgcatggagtatcttggcttcag 119
Query: 645 aatgagccaaagatgtgttcacct-ctgggccatcatagcggtacgcactaacaagaggc 703
| || ||||| || || ||||||| | |||||||| ||||||||||| || |||||||||
Sbjct: 118 agtgcgccaacgacgtattcacctnccgggccatcgtagcggtacgcgcttacaagaggc 59
Query: 704 actaaaagctttcggaagtcgccggtgacatgcgcggcaacgt 746
|| |||||| | ||||||| ||||||||| |||||||| ||||
Sbjct: 58 accaaaagc-tgcggaagttgccggtgacgtgcgcggcgacgt 17
>gb|CA023687.1|CA023687 HZ47B06r HZ Hordeum vulgare subsp. vulgare cDNA clone HZ47B06
5-PRIME, mRNA sequence
Length = 491
Score = 218 bits (110), Expect = 3e-055
Identities = 335/410 (81%)
Strand = Plus / Minus
Query: 743 acgtcctcctcgagcgatcgcttaaaccggtcatggtacgcctgcttgaccgcaaagagc 802
||||||||||||||||| ||||| || ||||||||||| |||||| |||| || ||||||
Sbjct: 483 acgtcctcctcgagcgagcgcttgaagcggtcatggtaggcctgcctgacggcgaagagc 424
Query: 803 tgcgcgggcgtgcgcgcgcacgcgatctccaccagcgcgcggccgccggggtggctcttc 862
||||||| ||||| ||| |||||||| || ||| || || || ||||| | ||||
Sbjct: 423 tgcgcggagccgcgcgagcaggcgatctcgacgagcacggggttccccgggtgccacttc 364
Query: 863 ttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacaggatc 922
|| || |||||| || ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 363 ttggcggtctcgttggcgagcaccgcgtcccgctccgcggggtccagcgtccacaggatc 304
Query: 923 accgccctctcgaacttgccgtggatctcgtcgccgagagcgcggagcagctccttcccg 982
|| ||||||||||| | ||| |||||||||| || ||||||||||||| |||
Sbjct: 303 acagccctctcgaagtcgcctgagatctcgtcggtgatgctccggagcagctcctcgccg 244
Query: 983 tacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggcgttgcggtgggccagg 1042
|| | ||||||||| |||||| ||||||||||||||||||| ||||||| |||||
Sbjct: 243 taggtgtcggcgtagtgcttgcggatggcgcggcgctgcgcggcgtcgcggtggcccagg 184
Query: 1043 atggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagctgctcg 1102
||||||||||| ||| |||||| |||||||| |||| |||||||||| |||| | |||
Sbjct: 183 atggagatgatgagcgcctcgttcgtgccccacccttggaaggccttgcggaggttgtcg 124
Query: 1103 cagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccat 1152
||||| ||||||| ||| |||||| ||| || || |||||||||||||
Sbjct: 123 cagtcgtcggcgagggcggggacgttggaggggaccttgagcgtcgccat 74
>gb|BG309723.2|BG309723 HVSMEc0012C21f Hordeum vulgare seedling shoot EST library HVcDNA0003
(Etiolated and unstressed) Hordeum vulgare subsp. vulgare
cDNA clone HVSMEc0012C21f, mRNA sequence
Length = 857
Score = 210 bits (106), Expect = 8e-053
Identities = 251/297 (84%), Gaps = 2/297 (0%)
Strand = Plus / Minus
Query: 859 cttcttcgcctcctcgttcgccagcaccgcgtccctctccgcggggtccagcgtccacag 918
|||||| ||||||| ||| ||||| ||||||||| |||||| ||||||||||||| |
Sbjct: 348 cttcttggcctccttgttgcccagcgccgcgtcccgctccgccgggtccagcgtcccntg 289
Query: 919 gatcaccgccctctcgaacttgccgtggatctcgtcgccgagagc-gcggagcagctcct 977
|||||||||||||||| ||| |||| ||||||||||| || | ||||||||||||||
Sbjct: 288 gatcaccgccctctcgcactcgccggggatctcgtcggtgaatggagcggagcagctcct 229
Query: 978 tcccgtacgcctcggcgtagccgcggcggatcgcgcggcgctgcgcggc-gttgcggtgg 1036
||||| || ||||||||| |||||| ||||||||||||||||| || |||||||
Sbjct: 228 cgccgtaggcgtcggcgtagtgcttgcggatggcgcggcgctgcgcggccgtcgcggtgg 169
Query: 1037 gccaggatggagatgatcagcttctcgttggtgccccaaccttcgaaggccttgtggagc 1096
||||||||| ||||||| ||| ||||||||||||||| || |||| |||||| |||||
Sbjct: 168 gccaggatgcagatgatgagccgctcgttggtgccccacccggcgaacgccttgcggagc 109
Query: 1097 tgctcgcagtcctcggcgacggccgggacggaggaaggaacggtgagcgtcgccatt 1153
||||||||||||||||| ||||||||||||| || || |||| |||||||||||||
Sbjct: 108 tgctcgcagtcctcggccacggccgggacggcggcggggacggagagcgtcgccatt 52
>gb|BM369956.2|BM369956 EBro08_SQ002_H12_R root, 3 week, drought-stressed, cv Optic, EBro08
Hordeum vulgare subsp. vulgare cDNA clone
EBro08_SQ002_H12 5', mRNA sequence
Length = 586
Score = 206 bits (104), Expect = 1e-051
Identities = 263/316 (83%)
Strand = Plus / Minus
Query: 410 ttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaaaga 469
||||| ||||| || ||||||||||||||||||||||| | ||||||||| ||| ||
Sbjct: 316 ttctcaaagtacctatcagggcaggtgaagcaccggataaccgcccgcagggttttgagg 257
Query: 470 aactcatccttggggtcagctttcagatccttgttgattgcatgagtgaactgatccttg 529
|||||||||||||||||||| |||||||||||| |||||| ||| || || |||
Sbjct: 256 aactcatccttggggtcagccttcagatccttggtgattgggtgaccaaatgtgtcattg 197
Query: 530 tagctattgaatgttgcaagtagctgagctttgctccgtgtggtgagaattctaatgatc 589
||| |||||| ||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct: 196 tagttattgagtgttgcaagcagctgagctttgctcctggtggtgaggattctgatgatc 137
Query: 590 tcctcatcactgtaagccttcttatggatcttctcatgaagtattttggcttcagaatga 649
|| ||||||| ||||||||| | | |||||||||||| ||||||||||| || |||||
Sbjct: 136 tcatcatcaccgtaagccttgtgctcgatcttctcatgcagtattttggcctctgaatgt 77
Query: 650 gccaaagatgtgttcacctctgggccatcatagcggtacgcactaacaagaggcactaaa 709
||||| |||||| |||||||| || ||||||||||| | || ||||| ||||| ||
Sbjct: 76 gccaaccttgtgttgacctctggtccctcatagcggtatgagcttacaagtggcaccaag 17
Query: 710 agctttcggaagtcgc 725
||||| ||||||||||
Sbjct: 16 agcttgcggaagtcgc 1
Score = 75.8 bits (38), Expect = 3e-012
Identities = 68/78 (87%)
Strand = Plus / Minus
Query: 287 acactgtttctcttctgataagcctcctttatcagcttcaggtcgacctcggcgcgagta 346
|||||||| |||||||| || ||||| || |||||||||||||| ||||||||||| ||
Sbjct: 439 acactgttcctcttctggtatgcctctttgatcagcttcaggtccacctcggcgcgggtc 380
Query: 347 gttacgaccctggtgagg 364
|||| |||||| ||||||
Sbjct: 379 gttatgaccctagtgagg 362
>gb|BU994141.1|BU994141 HM05O05r HM Hordeum vulgare subsp. vulgare cDNA clone HM05O05
5-PRIME, mRNA sequence
Length = 657
Score = 206 bits (104), Expect = 1e-051
Identities = 185/212 (87%)
Strand = Plus / Minus
Query: 516 tgaactgatccttgtagctattgaatgttgcaagtagctgagctttgctccgtgtggtga 575
|||||||||| |||||||| ||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 212 tgaactgatcattgtagctgttgaatgttgcaagtagctgagctttgctccttgtagtga 153
Query: 576 gaattctaatgatctcctcatcactgtaagccttcttatggatcttctcatgaagtattt 635
|||| || | || ||| ||||||||||| ||||||| ||||||| |||| ||||| |
Sbjct: 152 gaatcctgacgacctcatcatcactgtaggccttctcgctgatcttcgcatggagtatct 93
Query: 636 tggcttcagaatgagccaaagatgtgttcacctctgggccatcatagcggtacgcactaa 695
|||||||||| || ||||| || || |||||||| |||||||||||||||||||| || |
Sbjct: 92 tggcttcagagtgcgccaacgacgtattcacctccgggccatcatagcggtacgcgctta 33
Query: 696 caagaggcactaaaagctttcggaagtcgccg 727
|||||||||| |||||||| ||||||||||||
Sbjct: 32 caagaggcaccaaaagcttgcggaagtcgccg 1
Score = 97.6 bits (49), Expect = 9e-019
Identities = 205/257 (79%)
Strand = Plus / Minus
Query: 227 gcaagcataatatcctcataatctctagttgtatctttggccacagcacgctccagcggc 286
|||||||| ||||| ||||| ||||| ||||| || |||| ||||| |||||| ||
Sbjct: 488 gcaagcatcatatcttcatagtctctggttgtgtccttggaaacagccttctccaggggg 429
Query: 287 acactgtttctcttctgataagcctcctttatcagcttcaggtcgacctcggcgcgagta 346
|| ||||| |||||||| || ||||||||||||| ||||||||| |||||||| |||||
Sbjct: 428 acgctgttcctcttctggtacgcctcctttatcaccttcaggtccacctcggcacgagtg 369
Query: 347 gttacgaccctggtgaggtcatcctcatcagtgcccatgcctccaagagccagtcgaatg 406
|||| ||||| || ||| | ||| || || || | || |||||||||| || |||
Sbjct: 368 gttatcaccctagtaagggtgtgctcgtctgtaccgacaccaccaagagccaaccggatg 309
Query: 407 actttctcgaagtatctgtcagggcaggtgaagcaccggatgatcgcccgcagtgttgaa 466
|| ||||| ||||||||||| ||||| ||||| |||| |||||||||| ||| || ||
Sbjct: 308 accttctcaaagtatctgtcggggcaagtgaaacaccttatgatcgccctcagggtcgag 249
Query: 467 agaaactcatccttggg 483
|| ||||| ||||||||
Sbjct: 248 aggaactcgtccttggg 232
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 157,658
Number of Sequences: 312970
Number of extensions: 157658
Number of successful extensions: 43590
Number of sequences better than 0.5: 81
Number of HSP's better than 0.5 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43319
Number of HSP's gapped (non-prelim): 202
length of query: 1286
length of database: 175,134,539
effective HSP length: 19
effective length of query: 1267
effective length of database: 169,188,109
effective search space: 214361334103
effective search space used: 214361334103
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)