BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2253513.2.1
(746 letters)
Database: Hordeum_nucl_with_EST.fasta
312,970 sequences; 175,134,539 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA li... 345 1e-093
gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. v... 307 3e-082
gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA li... 264 4e-069
gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA li... 264 4e-069
gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA li... 264 4e-069
gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA li... 264 4e-069
gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. v... 234 3e-060
gb|BJ549178.1|BJ549178 BJ549178 K. Sato unpublished cDNA li... 129 1e-028
gb|AV834199.1|AV834199 AV834199 K. Sato unpublished cDNA li... 56 2e-006
gb|BF266558.3|BF266558 HV_CEa0015H07f Hordeum vulgare seedl... 50 1e-004
gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green... 46 0.002
gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa... 46 0.002
gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA li... 38 0.40
gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-a... 38 0.40
gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subs... 38 0.40
gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA li... 38 0.40
gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA li... 38 0.40
gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no... 38 0.40
gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm librar... 38 0.40
gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgar... 38 0.40
>gb|BJ549963.1|BJ549963 BJ549963 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a14 3', mRNA sequence
Length = 625
Score = 345 bits (174), Expect = 1e-093
Identities = 327/378 (86%)
Strand = Plus / Minus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| ||||| ||||| || || ||||| ||||| |||||| |||||||||||||||
Sbjct: 607 ctaatgcatgtggctgggcttatggcatgaacttctttgatcttaattcttggaggaggg 548
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
|||||| ||| |||||||||||||| ||||||| ||||||||||||| || | ||||||
Sbjct: 547 agaaatctaccgagcagtaccattactggcagactcagaatgagaaccggctactatgga 488
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
|| | ||||| ||||||| || || ||||| ||||||||||| ||||| |||||||| |
Sbjct: 487 agttgggaacattgcccccaggattaatcacattctactcgaccacaaagcctctggaca 428
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
||||||||||||| || || || || || ||||| |||||||||||||||||||||||||
Sbjct: 427 aatcttggcatgtcctgggtctcgggtataatccaagcatcagcatggaggagattagaa 368
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
| |||||||||||||||||||| || || |||||||| |||||||| || ||||||||||
Sbjct: 367 acgctgctgttgtgcatttcaatgggaatatgaagccttggctggatattggtatgaacc 308
Query: 301 agttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgca 360
|||||||||| || |||||||| || ||||| ||||| ||||| | |||||||||||||
Sbjct: 307 agttcaggcagctctggacaaaatacgtggattatgacgactcgttcattcgtcaatgca 248
Query: 361 attttgcaccgccataga 378
|||||||||| |||||||
Sbjct: 247 attttgcaccaccataga 230
>gb|CA032787.1|CA032787 HX14D07r HX Hordeum vulgare subsp. vulgare cDNA clone HX14D07
5-PRIME, mRNA sequence
Length = 529
Score = 307 bits (155), Expect = 3e-082
Identities = 308/359 (85%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| ||||| ||||| || || ||||| ||||| |||||| |||||||||||||||
Sbjct: 171 ctaatgcatgtggctgggcttatggcatgaacttctttgatcttaattcttggaggaggg 230
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
|||||| ||| |||||||||||||| ||||||| ||||||||||||| || | ||||||
Sbjct: 231 agaaatctaccgagcagtaccattactggcagactcagaatgagaaccggctactatgga 290
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcgacaacaaaacctctggaga 180
|| | ||||| ||||||| || || ||||| ||||||||||| ||||| |||||||| |
Sbjct: 291 agttgggaacattgcccccaggattaatcacattctactcgaccacaaagcctctggaca 350
Query: 181 aatcttggcatgttcttggacttggatacaatcctagcatcagcatggaggagattagaa 240
||||||||||||| || || || || || ||||| |||||||||||||||||||||||||
Sbjct: 351 aatcttggcatgtcctgggtctcgggtataatccaagcatcagcatggaggagattagaa 410
Query: 241 atgctgctgttgtgcatttcaacggcaacatgaagccctggctggacatcggtatgaacc 300
| |||||||||||||||||||| || || |||||||| |||||||| || ||||||||||
Sbjct: 411 acgctgctgttgtgcatttcaatgggaatatgaagccttggctggatattggtatgaacc 470
Query: 301 agttcaggcacctttggacaaagtatgtggactatgatgactcatatattcgtcaatgc 359
|||||||||| || |||||||| || || || ||||| ||||| | ||||||||||||
Sbjct: 471 agttcaggcagctctggacaaaatacgtcgattatgacgactcgttcattcgtcaatgc 529
>gb|AV909171.1|AV909171 AV909171 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o03 5', mRNA sequence
Length = 586
Score = 264 bits (133), Expect = 4e-069
Identities = 256/297 (86%)
Strand = Plus / Plus
Query: 82 attattggcagaatcagaatgagaacaggacattatggaagctaggaacgctgccccctg 141
|||| ||||||| ||||||||||||| || | |||||||| | ||||| ||||||| |
Sbjct: 3 attactggcagactcagaatgagaaccggctactatggaagttgggaacattgcccccag 62
Query: 142 gcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggac 201
| || ||||| ||||||||||| ||||| |||||||| |||||||||||||| || || |
Sbjct: 63 gattaatcacattctactcgaccacaaagcctctggacaaatcttggcatgtcctgggtc 122
Query: 202 ttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttca 261
| || || ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 123 tcgggtataatccaagcatcagcatggaggagattagaaacgctgctgttgtgcatttca 182
Query: 262 acggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctttggacaa 321
| || || |||||||| |||||||| || |||||||||||||||||||| || |||||||
Sbjct: 183 atgggaatatgaagccttggctggatattggtatgaaccagttcaggcagctctggacaa 242
Query: 322 agtatgtggactatgatgactcatatattcgtcaatgcaattttgcaccgccataga 378
| || ||||| ||||| ||||| | ||||||||||||||||||||||| |||||||
Sbjct: 243 aatacgtggattatgacgactcgttcattcgtcaatgcaattttgcaccaccataga 299
>gb|AV911054.1|AV911054 AV911054 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak11o03 3', mRNA sequence
Length = 527
Score = 264 bits (133), Expect = 4e-069
Identities = 256/297 (86%)
Strand = Plus / Minus
Query: 82 attattggcagaatcagaatgagaacaggacattatggaagctaggaacgctgccccctg 141
|||| ||||||| ||||||||||||| || | |||||||| | ||||| ||||||| |
Sbjct: 525 attactggcagactcagaatgagaaccggctactatggaagttgggaacattgcccccag 466
Query: 142 gcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggac 201
| || ||||| ||||||||||| ||||| |||||||| |||||||||||||| || || |
Sbjct: 465 gattaatcacattctactcgaccacaaagcctctggacaaatcttggcatgtcctgggtc 406
Query: 202 ttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttca 261
| || || ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 405 tcgggtataatccaagcatcagcatggaggagattagaaacgctgctgttgtgcatttca 346
Query: 262 acggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctttggacaa 321
| || || |||||||| |||||||| || |||||||||||||||||||| || |||||||
Sbjct: 345 atgggaatatgaagccttggctggatattggtatgaaccagttcaggcagctctggacaa 286
Query: 322 agtatgtggactatgatgactcatatattcgtcaatgcaattttgcaccgccataga 378
| || ||||| ||||| ||||| | ||||||||||||||||||||||| |||||||
Sbjct: 285 aatacgtggattatgacgactcgttcattcgtcaatgcaattttgcaccaccataga 229
>gb|BJ544949.1|BJ544949 BJ544949 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41d13 5', mRNA sequence
Length = 589
Score = 264 bits (133), Expect = 4e-069
Identities = 256/297 (86%)
Strand = Plus / Plus
Query: 82 attattggcagaatcagaatgagaacaggacattatggaagctaggaacgctgccccctg 141
|||| ||||||| ||||||||||||| || | |||||||| | ||||| ||||||| |
Sbjct: 6 attactggcagactcagaatgagaaccggctactatggaagttgggaacattgcccccag 65
Query: 142 gcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggac 201
| || ||||| ||||||||||| ||||| |||||||| |||||||||||||| || || |
Sbjct: 66 gattaatcacattctactcgaccacaaagcctctggacaaatcttggcatgtcctgggtc 125
Query: 202 ttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttca 261
| || || ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 126 tcgggtataatccaagcatcagcatggaggagattagaaacgctgctgttgtgcatttca 185
Query: 262 acggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctttggacaa 321
| || || |||||||| |||||||| || |||||||||||||||||||| || |||||||
Sbjct: 186 atgggaatatgaagccttggctggatattggtatgaaccagttcaggcagctctggacaa 245
Query: 322 agtatgtggactatgatgactcatatattcgtcaatgcaattttgcaccgccataga 378
| || ||||| ||||| ||||| | ||||||||||||||||||||||| |||||||
Sbjct: 246 aatacgtggattatgacgactcgttcattcgtcaatgcaattttgcaccaccataga 302
>gb|BJ546433.1|BJ546433 BJ546433 K. Sato unpublished cDNA library, cv. Akashinriki
vegetative stage leaves Hordeum vulgare subsp. vulgare
cDNA clone baak41d13 3', mRNA sequence
Length = 525
Score = 264 bits (133), Expect = 4e-069
Identities = 256/297 (86%)
Strand = Plus / Minus
Query: 82 attattggcagaatcagaatgagaacaggacattatggaagctaggaacgctgccccctg 141
|||| ||||||| ||||||||||||| || | |||||||| | ||||| ||||||| |
Sbjct: 524 attactggcagactcagaatgagaaccggctactatggaagttgggaacattgcccccag 465
Query: 142 gcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggac 201
| || ||||| ||||||||||| ||||| |||||||| |||||||||||||| || || |
Sbjct: 464 gattaatcacattctactcgaccacaaagcctctggacaaatcttggcatgtcctgggtc 405
Query: 202 ttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttca 261
| || || ||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 404 tcgggtataatccaagcatcagcatggaggagattagaaacgctgctgttgtgcatttca 345
Query: 262 acggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacctttggacaa 321
| || || |||||||| |||||||| || |||||||||||||||||||| || |||||||
Sbjct: 344 atgggaatatgaagccttggctggatattggtatgaaccagttcaggcagctctggacaa 285
Query: 322 agtatgtggactatgatgactcatatattcgtcaatgcaattttgcaccgccataga 378
| || ||||| ||||| ||||| | ||||||||||||||||||||||| |||||||
Sbjct: 284 aatacgtggattatgacgactcgttcattcgtcaatgcaattttgcaccaccataga 228
>gb|CB881764.1|CB881764 HM10N01w HM Hordeum vulgare subsp. vulgare cDNA clone HM10N01
3-PRIME, mRNA sequence
Length = 535
Score = 234 bits (118), Expect = 3e-060
Identities = 214/246 (86%)
Strand = Plus / Minus
Query: 133 tgccccctggcttgatcactttctactcgacaacaaaacctctggagaaatcttggcatg 192
||||||| || || ||||| ||||||||||| ||||| |||||||| |||||||||||||
Sbjct: 523 tgcccccaggattaatcacattctactcgaccacaaagcctctggacaaatcttggcatg 464
Query: 193 ttcttggacttggatacaatcctagcatcagcatggaggagattagaaatgctgctgttg 252
| || || || || || ||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 463 tcctgggtctcgggtataatccaagcatcagcatggaggagattagaaacgctgctgttg 404
Query: 253 tgcatttcaacggcaacatgaagccctggctggacatcggtatgaaccagttcaggcacc 312
|||||||||| || || |||||||| |||||||| || |||||||||||||||||||| |
Sbjct: 403 tgcatttcaatgggaatatgaagccttggctggatattggtatgaaccagttcaggcagc 344
Query: 313 tttggacaaagtatgtggactatgatgactcatatattcgtcaatgcaattttgcaccgc 372
| |||||||| || || || ||||| ||||| | ||||||||||||||||||||||| |
Sbjct: 343 tctggacaaaatacgtcgattatgacgactcgttcattcgtcaatgcaattttgcaccac 284
Query: 373 cataga 378
||||||
Sbjct: 283 cataga 278
>gb|BJ549178.1|BJ549178 BJ549178 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags25a14 5', mRNA sequence
Length = 606
Score = 129 bits (65), Expect = 1e-028
Identities = 137/161 (85%)
Strand = Plus / Plus
Query: 1 ctaatgcctgtggatgggcatacggaatgaatttcttcgatcttgattcttggaggaggg 60
||||||| ||||| ||||| || || ||||| ||||| |||||| |||||||||||||||
Sbjct: 446 ctaatgcatgtggctgggcttatggcatgaacttctttgatcttaattcttggaggaggg 505
Query: 61 agaaatgtactgagcagtaccattattggcagaatcagaatgagaacaggacattatgga 120
|||||| ||| |||||||||||||| ||||||| ||||||||||||| || | ||||||
Sbjct: 506 agaaatctaccgagcagtaccattactggcagactcagaatgagaaccggctactatgga 565
Query: 121 agctaggaacgctgccccctggcttgatcactttctactcg 161
|| | ||||| ||||||| || || ||||| |||||||||
Sbjct: 566 agttgggaacattgcccccaggattaatcacattctactcg 606
>gb|AV834199.1|AV834199 AV834199 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare shoots germination Hordeum vulgare subsp.
vulgare cDNA clone bags6i18, mRNA sequence
Length = 59
Score = 56.0 bits (28), Expect = 2e-006
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 348 attcgtcaatgcaattttgcaccgccataga 378
||||||||||||| |||||||||||||||||
Sbjct: 51 attcgtcaatgcanttttgcaccgccataga 21
>gb|BF266558.3|BF266558 HV_CEa0015H07f Hordeum vulgare seedling green leaf EST library
HVcDNA0004 (Blumeria challenged) Hordeum vulgare subsp.
vulgare cDNA clone HV_CEa0015H07f, mRNA sequence
Length = 767
Score = 50.1 bits (25), Expect = 1e-004
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 75 cagtaccattattggcagaatcagaatgagaac 107
||||||||||| ||||||| |||||||||||||
Sbjct: 727 cagtaccattactggcagactcagaatgagaac 759
>gb|BI956176.1|BI956176 HVSMEm0025O15f Hordeum vulgare green seedling EST library
HVcDNA0014 (Blumeria infected) Hordeum vulgare subsp.
vulgare cDNA clone HVSMEm0025O15f, mRNA sequence
Length = 674
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 242 tgctgctgttgtgcatttcaacggcaacatgaagccctggctg 284
||||||||||||||| | ||| || |||||||| |||||||||
Sbjct: 450 tgctgctgttgtgcactacaatgggaacatgaaaccctggctg 492
>gb|BG417087.1|BG417087 HVSMEk0016D06f Hordeum vulgare testa/pericarp EST library
HVcDNA0013 (normal) Hordeum vulgare subsp. vulgare cDNA
clone HVSMEk0016D06f, mRNA sequence
Length = 490
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 242 tgctgctgttgtgcatttcaacggcaacatgaagccctggctg 284
||||||||||||||| | ||| || |||||||| |||||||||
Sbjct: 272 tgctgctgttgtgcactacaatgggaacatgaaaccctggctg 314
>gb|AV837092.1|AV837092 AV837092 K. Sato unpublished cDNA library: Hordeum vulgare subsp.
vulgare seedling leaves second leaf stage Hordeum
vulgare subsp. vulgare cDNA clone basd23f10, mRNA
sequence
Length = 643
Score = 38.2 bits (19), Expect = 0.40
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
||||||||||| | |||| ||| || ||||||||||| ||||||||
Sbjct: 447 aatgctgctgtcgctcattacaatgggaacatgaagccatggctgga 401
>gb|BG345023.1|BG345023 HVSMEg0018F09f Hordeum vulgare pre-anthesis spike EST library
HVcDNA0008 (white to yellow anther) Hordeum vulgare
subsp. vulgare cDNA clone HVSMEg0018F09f, mRNA sequence
Length = 856
Score = 38.2 bits (19), Expect = 0.40
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
||||||||||| | |||| ||| || ||||||||||| ||||||||
Sbjct: 235 aatgctgctgtcgctcattacaatgggaacatgaagccatggctgga 281
>gb|AJ432742.1|AJ432742 AJ432742 S00002 Hordeum vulgare subsp. vulgare cDNA clone
S0000200078D03F1, mRNA sequence
Length = 447
Score = 38.2 bits (19), Expect = 0.40
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
||||||||||| | |||| ||| || ||||||||||| ||||||||
Sbjct: 103 aatgctgctgtcgctcattacaatgggaacatgaagccatggctgga 149
>gb|BJ465104.1|BJ465104 BJ465104 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 5', mRNA sequence
Length = 598
Score = 38.2 bits (19), Expect = 0.40
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
||||||||||| | |||| ||| || ||||||||||| ||||||||
Sbjct: 518 aatgctgctgtcgctcattacaatgggaacatgaagccatggctgga 564
>gb|BJ468235.1|BJ468235 BJ468235 K. Sato unpublished cDNA library, cv. Haruna Nijo
germination shoots Hordeum vulgare subsp. vulgare cDNA
clone bags37m09 3', mRNA sequence
Length = 634
Score = 38.2 bits (19), Expect = 0.40
Identities = 40/47 (85%)
Strand = Plus / Minus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
||||||||||| | |||| ||| || ||||||||||| ||||||||
Sbjct: 445 aatgctgctgtcgctcattacaatgggaacatgaagccatggctgga 399
>gb|BM372595.2|BM372595 EBpi05_SQ003_G13_R pistil, 8 DPA, no treatment, cv Optic, EBpi05
Hordeum vulgare subsp. vulgare cDNA clone
EBpi05_SQ003_G13 5', mRNA sequence
Length = 523
Score = 38.2 bits (19), Expect = 0.40
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
||||||||||| | |||| ||| || ||||||||||| ||||||||
Sbjct: 155 aatgctgctgtcgctcattacaatgggaacatgaagccatggctgga 201
>gb|CV055942.1|CV055942 BNEL12B7 Barley EST endosperm library Hordeum vulgare subsp.
vulgare cDNA clone BNEL12B7 5' similar to 68 kDa
protein, mRNA sequence
Length = 616
Score = 38.2 bits (19), Expect = 0.40
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
||||||||||| | |||| ||| || ||||||||||| ||||||||
Sbjct: 352 aatgctgctgtcgctcattacaatgggaacatgaagccatggctgga 398
>gb|CK123727.1|CK123727 BES1824105d06 BES1824 Hordeum vulgare subsp. vulgare cDNA clone
MPMGp2010D065 5-PRIME, mRNA sequence
Length = 786
Score = 38.2 bits (19), Expect = 0.40
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 240 aatgctgctgttgtgcatttcaacggcaacatgaagccctggctgga 286
||||||||||| | |||| ||| || ||||||||||| ||||||||
Sbjct: 391 aatgctgctgtcgctcattacaatgggaacatgaagccatggctgga 437
Database: Hordeum_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:16 PM
Number of letters in database: 175,134,539
Number of sequences in database: 312,970
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 54,165
Number of Sequences: 312970
Number of extensions: 54165
Number of successful extensions: 13197
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13175
Number of HSP's gapped (non-prelim): 22
length of query: 746
length of database: 175,134,539
effective HSP length: 19
effective length of query: 727
effective length of database: 169,188,109
effective search space: 122999755243
effective search space used: 122999755243
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)