BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204398.2.1
(666 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN818277.1|CN818277 HRO4470_C12_F24ZS5 Lib AA070E1X Aven... 157 2e-038
gb|CN820072.1|CN820072 HRO4410_G07_M14ZS5 Lib AA069E1X Aven... 157 2e-038
gb|CN816332.1|CN816332 HRO4519_E08_J15ZS5 Lib AA071E1X Aven... 145 6e-035
gb|CN820119.1|CN820119 HRO4411_C12_F23ZS5 Lib AA069E1X Aven... 94 2e-019
gb|CN820586.1|CN820586 HRO4415_B06_D11ZS5 Lib AA069E1X Aven... 54 2e-007
gb|CN820669.1|CN820669 HRO4416_A09_B18ZS5 Lib AA069E1X Aven... 34 0.15
>gb|CN818277.1|CN818277 HRO4470_C12_F24ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4470_C12_F24, mRNA sequence
Length = 620
Score = 157 bits (79), Expect = 2e-038
Identities = 220/267 (82%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
||||||||||| |||||| | ||||| || ||||||||||||| || || || |||||
Sbjct: 214 acatctggaaattttgaagttgcactggtaactatcctcagatgtgctgagaatccagcg 273
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||| | ||| | || ||||||||||||| || ||||| |||||||||
Sbjct: 274 aagtattttgctaaggtgttaaggaaatccatgaaaggtcttggtactgacgacaagaca 333
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
||| ||||||| ||||| || || || || |||||||||||||| || ||||||||||||
Sbjct: 334 cttgtaagggtggtggtaaccagaaccgagattgatatgcaatacataaaggcagagtac 393
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || ||||| ||||||| |||||||| ||||||||||| || |||
Sbjct: 394 tacaagaaatacaaaaagccgctagctgatgctatccattccgaaacatcggggggttat 453
Query: 241 cggacattccttctttcacttgttggt 267
||||| ||||| || || |||||||||
Sbjct: 454 cggacgttcctgctctcgcttgttggt 480
Score = 38.2 bits (19), Expect = 0.010
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 319 accctaaatgcagcgac-ctacctgga 344
||||||||||||||||| |||||||||
Sbjct: 530 accctaaatgcagcgactctacctgga 556
>gb|CN820072.1|CN820072 HRO4410_G07_M14ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4410_G07_M14, mRNA
sequence
Length = 798
Score = 157 bits (79), Expect = 2e-038
Identities = 220/267 (82%)
Strand = Plus / Plus
Query: 1 acatctggaaactttgaattcgcacttttagctatcctcagatgcgcggaaaacccagca 60
||||||||||| |||||| | ||||| || ||||||||||||| || || || |||||
Sbjct: 320 acatctggaaattttgaagttgcactggtaactatcctcagatgtgctgagaatccagcg 379
Query: 61 aagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgacaagaca 120
||||||||||| ||| | ||| | || ||||||||||||| || ||||| |||||||||
Sbjct: 380 aagtattttgctaaggtgttaaggaaatccatgaaaggtcttggtactgacgacaagaca 439
Query: 121 cttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcagagtac 180
||| ||||||| ||||| || || || || |||||||||||||| || ||||||||||||
Sbjct: 440 cttgtaagggtggtggtaaccagaaccgagattgatatgcaatacataaaggcagagtac 499
Query: 181 ttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaactat 240
| |||||| || || ||||| ||||||| |||||||| ||||||||||| || |||
Sbjct: 500 tacaagaaatacaaaaagccgctagctgatgctatccattccgaaacatcggggggttat 559
Query: 241 cggacattccttctttcacttgttggt 267
||||| ||||| || || |||||||||
Sbjct: 560 cggacgttcctgctctcgcttgttggt 586
Score = 38.2 bits (19), Expect = 0.010
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 319 accctaaatgcagcgac-ctacctgga 344
||||||||||||||||| |||||||||
Sbjct: 636 accctaaatgcagcgactctacctgga 662
>gb|CN816332.1|CN816332 HRO4519_E08_J15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_E08_J15, mRNA sequence
Length = 546
Score = 145 bits (73), Expect = 6e-035
Identities = 178/213 (83%)
Strand = Plus / Plus
Query: 55 ccagcaaagtattttgcaaagctcttacgaaaggccatgaaaggtctaggcactgatgac 114
||||| ||||||||||| ||| | ||| | || ||||||||||||| || |||||||||
Sbjct: 12 ccagcgaagtattttgctaaggtgttaaggaaatccatgaaaggtcttggtactgatgac 71
Query: 115 aagacacttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggca 174
||||| ||||||||||| ||||| || || || || |||||||||||||| || ||||||
Sbjct: 72 aagactcttataagggtggtggtaaccagaaccgagattgatatgcaatacataaaggca 131
Query: 175 gagtacttcaagaagtataagaagccattagctgaggctatccactccgaaacatcagga 234
||||||| |||||| || || ||||| ||||||| |||||||| ||||||||||| |||
Sbjct: 132 gagtactacaagaaatacaaaaagccgctagctgatgctatccattccgaaacatcggga 191
Query: 235 aactatcggacattccttctttcacttgttggt 267
|||||||| ||||| || || |||||||||
Sbjct: 192 ggttatcggacgttcctgctctcgcttgttggt 224
Score = 38.2 bits (19), Expect = 0.010
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 319 accctaaatgcagcgac-ctacctgga 344
||||||||||||||||| |||||||||
Sbjct: 274 accctaaatgcagcgactctacctgga 300
>gb|CN820119.1|CN820119 HRO4411_C12_F23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4411_C12_F23, mRNA
sequence
Length = 480
Score = 93.7 bits (47), Expect = 2e-019
Identities = 125/151 (82%)
Strand = Plus / Plus
Query: 117 gacacttataagggttgtggtgacgaggactgaaattgatatgcaatatatcaaggcaga 176
||||||| ||||||| ||||| || || || || |||||||||||||| || ||||||||
Sbjct: 12 gacacttgtaagggtggtggtaaccagaaccgagattgatatgcaatacataaaggcaga 71
Query: 177 gtacttcaagaagtataagaagccattagctgaggctatccactccgaaacatcaggaaa 236
||||| |||||| || || ||||| ||||||| |||||||| ||||||||||| ||
Sbjct: 72 gtactacaagaaatacaaaaagccgctagctgatgctatccattccgaaacatcgggggg 131
Query: 237 ctatcggacattccttctttcacttgttggt 267
|||||||| ||||| || || |||||||||
Sbjct: 132 ttatcggacgttcctgctctcgcttgttggt 162
Score = 38.2 bits (19), Expect = 0.010
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 319 accctaaatgcagcgac-ctacctgga 344
||||||||||||||||| |||||||||
Sbjct: 212 accctaaatgcagcgactctacctgga 238
>gb|CN820586.1|CN820586 HRO4415_B06_D11ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4415_B06_D11, mRNA
sequence
Length = 442
Score = 54.0 bits (27), Expect = 2e-007
Identities = 81/99 (81%)
Strand = Plus / Plus
Query: 169 aaggcagagtacttcaagaagtataagaagccattagctgaggctatccactccgaaaca 228
||||| ||||||| |||||| || || ||||| ||||||| |||||||| |||||||||
Sbjct: 26 aaggctgagtactacaagaaatacaaaaagccgctagctgatgctatccattccgaaaca 85
Query: 229 tcaggaaactatcggacattccttctttcacttgttggt 267
|| || |||||||| ||||| || || |||||||||
Sbjct: 86 tcggggggttatcggacgttcctgctctcgcttgttggt 124
Score = 38.2 bits (19), Expect = 0.010
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 319 accctaaatgcagcgac-ctacctgga 344
||||||||||||||||| |||||||||
Sbjct: 174 accctaaatgcagcgactctacctgga 200
>gb|CN820669.1|CN820669 HRO4416_A09_B18ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4416_A09_B18, mRNA
sequence
Length = 509
Score = 34.2 bits (17), Expect = 0.15
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 456 gtttcttgttggaaaat 472
|||||||||||||||||
Sbjct: 466 gtttcttgttggaaaat 450
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1443
Number of Sequences: 8143
Number of extensions: 1443
Number of successful extensions: 355
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 11
length of query: 666
length of database: 4,702,463
effective HSP length: 16
effective length of query: 650
effective length of database: 4,572,175
effective search space: 2971913750
effective search space used: 2971913750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)