BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419471.2.3
(1052 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE439203.1|BE439203 CDO1421_WHE03E02R ITEC CDO Oat cDNA ... 216 3e-056
gb|CN817098.1|CN817098 HRO4528_B12_D24ZS5 Lib AA071E1X Aven... 206 3e-053
gb|CN816713.1|CN816713 HRO4523_H09_P17ZS5 Lib AA071E1X Aven... 129 5e-030
gb|CN815566.1|CN815566 HRO4513_B02_C03ZS5 Lib AA071E1X Aven... 88 2e-017
gb|CN816884.1|CN816884 HRO4525_H04_O07ZS5 Lib AA071E1X Aven... 84 3e-016
gb|CN821529.1|CN821529 HRO4426_D02_G04ZS5 Lib AA069E1X Aven... 72 1e-012
gb|CN817992.1|CN817992 HRO4456_D03_G06ZS5 Lib AA070E1X Aven... 36 0.061
gb|CN818298.1|CN818298 HRO4455_E03_I05ZS5 Lib AA070E1X Aven... 36 0.061
gb|CN818556.1|CN818556 HRO4466_H02_P04ZS5 Lib AA070E1X Aven... 36 0.061
gb|CN819153.1|CN819153 HRO4468_F03_K06ZS5 Lib AA070E1X Aven... 36 0.061
>gb|BE439203.1|BE439203 CDO1421_WHE03E02R ITEC CDO Oat cDNA Library Avena sativa cDNA clone
CDO1421_WHE03E02, mRNA sequence
Length = 275
Score = 216 bits (109), Expect = 3e-056
Identities = 187/213 (87%)
Strand = Plus / Minus
Query: 334 cttgaggggcttcaccacctcccaggtgaagtcggggtcgtccctcccaaagtgcccgta 393
||||||||||||||||||||||||||||||||| || | ||||| ||||||||||| ||
Sbjct: 227 cttgaggggcttcaccacctcccaggtgaagtctggcccatcccttccaaagtgcccata 168
Query: 394 ggccgccgtcttgaggtagcgcccgttgccgcctttcttgaggtcgaggttgatgatgat 453
||||||||||||||||| ||||| || || || |||| ||||||||||||||||||||
Sbjct: 167 cgccgccgtcttgaggtaccgcccattcccacccctcttcaggtcgaggttgatgatgat 108
Query: 454 catgccgggcctgaagtcgaagttctccttcacgatcttcaggatctccttgtcggggat 513
|||||||||||||||||| ||||||||||| || || || ||||| |||||||| |||||
Sbjct: 107 catgccgggcctgaagtcaaagttctccttgacaatgttgaggatatccttgtcagggat 48
Query: 514 cgcgccggtgccgtacgtgtccacgaacaccga 546
| ||| |||||||| |||||||| ||||||||
Sbjct: 47 cctgcctgtgccgtatgtgtccacaaacaccga 15
>gb|CN817098.1|CN817098 HRO4528_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4528_B12_D24, mRNA sequence
Length = 718
Score = 206 bits (104), Expect = 3e-053
Identities = 178/202 (88%), Gaps = 3/202 (1%)
Strand = Plus / Minus
Query: 334 cttgaggggcttcaccacctcccaggtgaagtcggggtcgtccctcccaaagtgcccgta 393
||||||||||||||||||||||||||||||||||||||| || | || ||||| |||||
Sbjct: 209 cttgaggggcttcaccacctcccaggtgaagtcggggtcctcacggccgaagtggccgta 150
Query: 394 ggccgccgtcttgaggtagcgcccgttgccgcctttcttgaggtcgaggttgatgatgat 453
||| || ||||||| | | || ||| ||||| ||||||||||| ||||||||| ||||
Sbjct: 149 ggcggcggtcttgatgaa---cctgttcccgcccttcttgaggtcaaggttgatgctgat 93
Query: 454 catgccgggcctgaagtcgaagttctccttcacgatcttcaggatctccttgtcggggat 513
||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 92 catcccgggcctgaagtcgaagttctccttcacgagcttcaggatctccctgtcggggat 33
Query: 514 cgcgccggtgccgtacgtgtcc 535
| |||||||||||| ||||||
Sbjct: 32 cttgccggtgccgtaggtgtcc 11
>gb|CN816713.1|CN816713 HRO4523_H09_P17ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4523_H09_P17, mRNA sequence
Length = 608
Score = 129 bits (65), Expect = 5e-030
Identities = 268/335 (80%), Gaps = 3/335 (0%)
Strand = Plus / Minus
Query: 334 cttgaggggcttcaccacctcccaggtgaagtcggggtcgtccctcccaaagtgcccgta 393
|||||| |||||||| ||||||||||||||||| | || || | ||||||||| |||||
Sbjct: 346 cttgagaggcttcacaacctcccaggtgaagtcagcatcatcacgcccaaagtgaccgta 287
Query: 394 ggccgccgtcttgaggtagcgcccgttgccgcctttcttgaggtcgaggttgatgatgat 453
||| || ||||||| | | || ||||| || ||||| | ||| ||||||||| ||||
Sbjct: 286 ggcagcggtcttgatgaa---cctattgccacccttcttcaagtcaaggttgatgctgat 230
Query: 454 catgccgggcctgaagtcgaagttctccttcacgatcttcaggatctccttgtcggggat 513
||| || ||||| ||||| ||||||||||| || | ||||||||||||| |||| || ||
Sbjct: 229 catcccaggcctaaagtcaaagttctcctttaccagcttcaggatctccctgtcaggaat 170
Query: 514 cgcgccggtgccgtacgtgtccacgaacaccgataggggctcgggcacgccgatggcgta 573
| ||| ||||| || | ||| || ||||| || | |||||| ||||| || ||||| ||
Sbjct: 169 cttgcccgtgccataggagtctacaaacacagacaagggctcaggcacaccaatggcata 110
Query: 574 ggagacctggacgatggcgcggcgggcgaggccggcggcgacgatgctcttggcagcctg 633
|||| ||| |||||| | ||||| || || ||| ||| || |||||||||||||||||
Sbjct: 109 cgagatctgcacgatgacacggcgtgcaagcccgctggcaacaatgctcttggcagcctg 50
Query: 634 cctcgcgacgtaggccccgctgcggtccaccttgg 668
||| || | |||||| || |||||||| |||||||
Sbjct: 49 cctggcaatgtaggcaccactgcggtcaaccttgg 15
>gb|CN815566.1|CN815566 HRO4513_B02_C03ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4513_B02_C03, mRNA sequence
Length = 656
Score = 87.7 bits (44), Expect = 2e-017
Identities = 142/174 (81%), Gaps = 3/174 (1%)
Strand = Plus / Minus
Query: 334 cttgaggggcttcaccacctcccaggtgaagtcggggtcgtccctcccaaagtgcccgta 393
|||||| |||||||| ||||||||||||||||| | || || | ||||||||| |||||
Sbjct: 216 cttgagaggcttcacaacctcccaggtgaagtcagcatcatcacgcccaaagtgaccgta 157
Query: 394 ggccgccgtcttgaggtagcgcccgttgccgcctttcttgaggtcgaggttgatgatgat 453
||| || ||||||| | | || ||||| || ||||| | ||| ||||||||| ||||
Sbjct: 156 ggcagcggtcttgatgaa---cctattgccacccttcttcaagtcaaggttgatgctgat 100
Query: 454 catgccgggcctgaagtcgaagttctccttcacgatcttcaggatctccttgtc 507
||| || ||||| ||||| ||||||||||| || | ||||||||||||| ||||
Sbjct: 99 catcccaggcctaaagtcaaagttctcctttaccagcttcaggatctccctgtc 46
>gb|CN816884.1|CN816884 HRO4525_H04_O07ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4525_H04_O07, mRNA sequence
Length = 317
Score = 83.8 bits (42), Expect = 3e-016
Identities = 66/74 (89%)
Strand = Plus / Minus
Query: 334 cttgaggggcttcaccacctcccaggtgaagtcggggtcgtccctcccaaagtgcccgta 393
|||||||||||||||||||||||| |||||||||||||| || | |||||||| |||||
Sbjct: 99 cttgaggggcttcaccacctcccatgtgaagtcggggtcctcacggccaaagtggccgta 40
Query: 394 ggccgccgtcttga 407
||| || |||||||
Sbjct: 39 ggcggcggtcttga 26
>gb|CN821529.1|CN821529 HRO4426_D02_G04ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4426_D02_G04, mRNA
sequence
Length = 515
Score = 71.9 bits (36), Expect = 1e-012
Identities = 122/150 (81%), Gaps = 3/150 (2%)
Strand = Plus / Minus
Query: 334 cttgaggggcttcaccacctcccaggtgaagtcggggtcgtccctcccaaagtgcccgta 393
|||||| |||||||| ||||||||||||||||| | || || | ||||||||| |||||
Sbjct: 159 cttgagaggcttcacaacctcccaggtgaagtcagcatcatcacgcccaaagtgaccgta 100
Query: 394 ggccgccgtcttgaggtagcgcccgttgccgcctttcttgaggtcgaggttgatgatgat 453
||| || ||||||| | | || ||||| || ||||| | ||| ||||||||| ||||
Sbjct: 99 ggcagcggtcttgatgaa---cctattgccacccttcttcaagtcaaggttgatgctgat 43
Query: 454 catgccgggcctgaagtcgaagttctcctt 483
||| || ||||| ||||| |||||||||||
Sbjct: 42 catcccaggcctaaagtcaaagttctcctt 13
>gb|CN817992.1|CN817992 HRO4456_D03_G06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4456_D03_G06, mRNA sequence
Length = 775
Score = 36.2 bits (18), Expect = 0.061
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 868 gtcagcagcaatctcgtc 885
||||||||||||||||||
Sbjct: 413 gtcagcagcaatctcgtc 396
>gb|CN818298.1|CN818298 HRO4455_E03_I05ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4455_E03_I05, mRNA sequence
Length = 612
Score = 36.2 bits (18), Expect = 0.061
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 868 gtcagcagcaatctcgtc 885
||||||||||||||||||
Sbjct: 85 gtcagcagcaatctcgtc 68
>gb|CN818556.1|CN818556 HRO4466_H02_P04ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4466_H02_P04, mRNA sequence
Length = 693
Score = 36.2 bits (18), Expect = 0.061
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 868 gtcagcagcaatctcgtc 885
||||||||||||||||||
Sbjct: 237 gtcagcagcaatctcgtc 220
>gb|CN819153.1|CN819153 HRO4468_F03_K06ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4468_F03_K06, mRNA sequence
Length = 827
Score = 36.2 bits (18), Expect = 0.061
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 868 gtcagcagcaatctcgtc 885
||||||||||||||||||
Sbjct: 289 gtcagcagcaatctcgtc 272
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2631
Number of Sequences: 8143
Number of extensions: 2631
Number of successful extensions: 760
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 746
Number of HSP's gapped (non-prelim): 14
length of query: 1052
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1036
effective length of database: 4,572,175
effective search space: 4736773300
effective search space used: 4736773300
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)