BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2306445.2.1
(1074 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN816299.1|CN816299 HRO4519_B10_D19ZS5 Lib AA071E1X Aven... 107 2e-023
gb|CN814861.1|CN814861 HRO4503_C08_F15ZS5 Lib AA071E1X Aven... 38 0.016
gb|CN817245.1|CN817245 HRO4464_E05_I10ZS5 Lib AA070E1X Aven... 38 0.016
gb|CN821320.1|CN821320 HRO4424_A03_B06ZS5 Lib AA069E1X Aven... 38 0.016
>gb|CN816299.1|CN816299 HRO4519_B10_D19ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4519_B10_D19, mRNA sequence
Length = 678
Score = 107 bits (54), Expect = 2e-023
Identities = 141/170 (82%)
Strand = Plus / Minus
Query: 402 acagcttcctcgttagagaccacatcccacagcccatcacttgcaaggataagaaactcg 461
|||||||| |||||| ||| ||||||||||| ||||| || || |||||||| || |||
Sbjct: 180 acagcttcatcgttactgacaacatcccacagtccatcgctagcgaggataaggaattcg 121
Query: 462 agtgtgtcatcaacaacctcctctcggatctccggatccacaaccacatattgctttaag 521
|||| | ||||||| |||||||| |||||| ||||| | || ||||| ||||||||
Sbjct: 120 agtgagccatcaactacctcctccttgatctctggatcagcgacaacatactgctttaaa 61
Query: 522 agtttgtcaccaaaagcacgcgaaacagcaagtacaccaccaacgcgcca 571
||||| |||||||| || || ||||||||||| ||||||||||| |||||
Sbjct: 60 agtttatcaccaaatgctcgagaaacagcaagaacaccaccaacacgcca 11
>gb|CN814861.1|CN814861 HRO4503_C08_F15ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4503_C08_F15, mRNA sequence
Length = 387
Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 868 tgttgaacaggttttcttt 886
|||||||||||||||||||
Sbjct: 34 tgttgaacaggttttcttt 52
>gb|CN817245.1|CN817245 HRO4464_E05_I10ZS5 Lib AA070E1X Avena sativa cv. Ogle-C green leaf
Avena sativa cDNA clone HRO4464_E05_I10, mRNA sequence
Length = 585
Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 868 tgttgaacaggttttcttt 886
|||||||||||||||||||
Sbjct: 229 tgttgaacaggttttcttt 247
>gb|CN821320.1|CN821320 HRO4424_A03_B06ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4424_A03_B06, mRNA
sequence
Length = 715
Score = 38.2 bits (19), Expect = 0.016
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 868 tgttgaacaggttttcttt 886
|||||||||||||||||||
Sbjct: 388 tgttgaacaggttttcttt 406
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2683
Number of Sequences: 8143
Number of extensions: 2683
Number of successful extensions: 726
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 722
Number of HSP's gapped (non-prelim): 4
length of query: 1074
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1058
effective length of database: 4,572,175
effective search space: 4837361150
effective search space used: 4837361150
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)