BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2253513.2.1
(746 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Aven... 313 1e-085
>gb|CN815958.1|CN815958 HRO4515_D01_H01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4515_D01_H01, mRNA sequence
Length = 653
Score = 313 bits (158), Expect = 1e-085
Identities = 260/294 (88%)
Strand = Plus / Plus
Query: 88 ggcagaatcagaatgagaacaggacattatggaagctaggaacgctgccccctggcttga 147
|||||| ||||||||||||| || |||||||||| ||||||| |||||||||| || |
Sbjct: 329 ggcagactcagaatgagaaccggttattatggaagttaggaacattgccccctgggttaa 388
Query: 148 tcactttctactcgacaacaaaacctctggagaaatcttggcatgttcttggacttggat 207
|||| ||||||||||| ||||| |||||||| ||||| |||||||||||||| || || |
Sbjct: 389 tcacattctactcgaccacaaagcctctggacaaatcctggcatgttcttggtctcgggt 448
Query: 208 acaatcctagcatcagcatggaggagattagaaatgctgctgttgtgcatttcaacggca 267
| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| || |
Sbjct: 449 ataatccaagcatcagcatggaggagatcagaaacgctgctgttgtgcatttcaatggta 508
Query: 268 acatgaagccctggctggacatcggtatgaaccagttcaggcacctttggacaaagtatg 327
|||||||||| |||||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct: 509 acatgaagccttggctggatattggtatgaaccagttcaggcacctctggacaaagtatg 568
Query: 328 tggactatgatgactcatatattcgtcaatgcaattttgcaccgccatagaagg 381
|||| |||| ||||||| ||||| || |||||||||||||||||||||||||
Sbjct: 569 tggattatggcgactcattcattcgccagtgcaattttgcaccgccatagaagg 622
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1771
Number of Sequences: 8143
Number of extensions: 1771
Number of successful extensions: 467
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 1
length of query: 746
length of database: 4,702,463
effective HSP length: 16
effective length of query: 730
effective length of database: 4,572,175
effective search space: 3337687750
effective search space used: 3337687750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)