BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 1738955.2.1
         (1271 letters)

Database: Avena_nucl_with_EST.fasta 
           8143 sequences; 4,702,463 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CN817098.1|CN817098  HRO4528_B12_D24ZS5 Lib AA071E1X Aven...    36   0.074
gb|AM071402.1|AM071402  AM071402 Avena sativa leaf 3 weeks o...    36   0.074
emb|Z48429.1|AFABF1  A.fatua mRNA for DNA-binding protein (c...    36   0.074

>gb|CN817098.1|CN817098 HRO4528_B12_D24ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
           sativa cDNA clone HRO4528_B12_D24, mRNA sequence
          Length = 718

 Score = 36.2 bits (18), Expect = 0.074
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                 
Query: 716 tgaacctgatcccgcccttctt 737
           |||||||| |||||||||||||
Sbjct: 135 tgaacctgttcccgcccttctt 114



>gb|AM071402.1|AM071402 AM071402 Avena sativa leaf 3 weeks old, post-germination Avena sativa
            cDNA clone ASCID1-1_016_f08, mRNA sequence
          Length = 592

 Score = 36.2 bits (18), Expect = 0.074
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1082 cgccgccgccgtagaacg 1099
            ||||||||||||||||||
Sbjct: 401  cgccgccgccgtagaacg 384



>emb|Z48429.1|AFABF1 A.fatua mRNA for DNA-binding protein (clone ABF1)
          Length = 1459

 Score = 36.2 bits (18), Expect = 0.074
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 1075 gacgcgtcgccgccgccg 1092
            ||||||||||||||||||
Sbjct: 415  gacgcgtcgccgccgccg 398



  Database: Avena_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:15 PM
  Number of letters in database: 4,702,463
  Number of sequences in database:  8143
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2718
Number of Sequences: 8143
Number of extensions: 2718
Number of successful extensions: 729
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 724
Number of HSP's gapped (non-prelim): 5
length of query: 1271
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1255
effective length of database: 4,572,175
effective search space: 5738079625
effective search space used: 5738079625
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)