BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738931.2.11
(609 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815853.1|CN815853 HRO4511_C01_F01ZS5 Lib AA071E1X Aven... 270 1e-072
>gb|CN815853.1|CN815853 HRO4511_C01_F01ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4511_C01_F01, mRNA sequence
Length = 511
Score = 270 bits (136), Expect = 1e-072
Identities = 238/272 (87%)
Strand = Plus / Plus
Query: 89 aaggaggaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgc 148
||||| |||||||||||| | ||||||||| |||| |||||||||||||||||||| ||
Sbjct: 46 aaggacgaggtggtcacccgcgagtacaccgtcaatctccacaagcgcctccacggatgt 105
Query: 149 acattcaagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggcc 208
|| |||||||||||||| || || ||||||||||| ||||||||||||||||||||||||
Sbjct: 106 accttcaagaagaaggcgcctaatgccatcaaggaaatcaggaagtttgcacagaaggcc 165
Query: 209 atgggcaccacggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcggg 268
||||| ||||| || || | |||||||||||||||||||||||||||||||| |||||
Sbjct: 166 atgggaaccacagatgttcgcatcgatgtgaagctcaacaagcacatctggagtagcggc 225
Query: 269 atcaggagcgtgccgcggagggttcgtgtgaggatcgcccgcaagaggaacgatgaggag 328
|||||||| || || |||| || ||||| || || ||||| ||||||||||| ||||||
Sbjct: 226 atcaggagtgtcccaaggagagtccgtgtcagaattgcccgtaagaggaacgacgaggag 285
Query: 329 gatgccaaggaggaactctactcccttgtcac 360
|||||||||||||| |||||||| || |||||
Sbjct: 286 gatgccaaggaggagctctactctctggtcac 317
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2050
Number of Sequences: 8143
Number of extensions: 2050
Number of successful extensions: 552
Number of sequences better than 0.5: 1
Number of HSP's better than 0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 551
Number of HSP's gapped (non-prelim): 1
length of query: 609
length of database: 4,702,463
effective HSP length: 16
effective length of query: 593
effective length of database: 4,572,175
effective search space: 2711299775
effective search space used: 2711299775
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)