BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.149
(1197 letters)
Database: Avena_nucl_with_EST.fasta
8143 sequences; 4,702,463 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN815339.1|CN815339 HRO4508_F01_L02ZS5 Lib AA071E1X Aven... 155 1e-037
gb|CN821129.1|CN821129 HRO4427_G12_N23ZS5 Lib AA069E1X Aven... 107 2e-023
gb|CN816113.1|CN816113 HRO4517_B05_C09ZS5 Lib AA071E1X Aven... 103 4e-022
gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3... 100 6e-021
>gb|CN815339.1|CN815339 HRO4508_F01_L02ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4508_F01_L02, mRNA sequence
Length = 525
Score = 155 bits (78), Expect = 1e-037
Identities = 291/362 (80%)
Strand = Plus / Minus
Query: 381 ttgtagtcgccatgaacctccatgagcttcccaagatcgaacttgggggccttgagtatc 440
|||||||| || || |||||||| | |||||||| ||||||||| || | ||| || |||
Sbjct: 389 ttgtagtcaccgtgtacctccatcaacttcccaatatcgaactttggtgacttcaggatc 330
Query: 441 ttcaccttgcggatgaagacgttttgaagtgggaagatgctggaggtagacttctcaatc 500
|| |||||||||| | || ||||| |||||||| ||||| || || | |||||||||
Sbjct: 329 tttaccttgcggacatacacattttggagtgggaaaatgcttgaagttgccttctcaata 270
Query: 501 tccttaccaataacttctggaatgaacttcgaaacaagttctttcaggtcacatgtagaa 560
|| || ||||| || || || || || || | ||| || || |||| |||||| || |||
Sbjct: 269 tcttttccaatgacctcagggataaattttgcaaccagctccttcaagtcacaggttgaa 210
Query: 561 gcctggttgatcataatctcaaccatcttacggcggatctgacggatctgggatgcctga 620
|| |||||| ||| ||||| |||||||| ||||| ||||| | ||||||| ||||||
Sbjct: 209 gcgtggttggccatgatctcgaccatcttccggcgaatctgtctgatctggctggcctga 150
Query: 621 gcatagcaggttctcttgacctggtttgggcgcctcttggtgaagccgatgcagaacaaa 680
|||||||| || | ||| ||||||||||| || ||||| |||||||| ||||||||||
Sbjct: 149 gcatagcaagtacgcttcacctggtttggacgtctcttagtgaagccaatgcagaacagc 90
Query: 681 cgcaacatgtagttgtcggttgtcttgacatcaacatgggcttcgattaatgtctgccac 740
|| | |||||| ||||| || ||||| |||||||||||||| || |||| ||||||||||
Sbjct: 89 cggagcatgtaattgtcagtagtcttaacatcaacatgggcctcaattagtgtctgccac 30
Query: 741 tt 742
||
Sbjct: 29 tt 28
>gb|CN821129.1|CN821129 HRO4427_G12_N23ZS5 Lib AA069E1X Avena sativa cv. Ogle-C etiolated
leaf Avena sativa cDNA clone HRO4427_G12_N23, mRNA
sequence
Length = 497
Score = 107 bits (54), Expect = 2e-023
Identities = 117/138 (84%)
Strand = Plus / Minus
Query: 368 accaacatcctctttgtagtcgccatgaacctccatgagcttcccaagatcgaacttggg 427
||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 152 accaacatcttccttgtagtcaccatgcacctccatgagcttccccagatcgaacttggg 93
Query: 428 ggccttgagtatcttcaccttgcggatgaagacgttttgaagtgggaagatgctggaggt 487
||||| | |||||||||||||||| | ||||| || || ||||||||||||| ||
Sbjct: 92 tgccttcaagatcttcaccttgcggacatacacgttctggagcgggaagatgctggctgt 33
Query: 488 agacttctcaatctcctt 505
| |||||| ||||||||
Sbjct: 32 cgccttctcgatctcctt 15
Score = 46.1 bits (23), Expect = 7e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 305 ctactcggcagcagcaacctcct 327
|||||||||||||||||||||||
Sbjct: 224 ctactcggcagcagcaacctcct 202
>gb|CN816113.1|CN816113 HRO4517_B05_C09ZS5 Lib AA071E1X Avena sativa cv. Ogle-C root Avena
sativa cDNA clone HRO4517_B05_C09, mRNA sequence
Length = 846
Score = 103 bits (52), Expect = 4e-022
Identities = 100/116 (86%)
Strand = Plus / Minus
Query: 368 accaacatcctctttgtagtcgccatgaacctccatgagcttcccaagatcgaacttggg 427
||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 667 accaacatcttccttgtagtcaccatgcacctccatgagcttccccagatcgaacttggg 608
Query: 428 ggccttgagtatcttcaccttgcggatgaagacgttttgaagtgggaagatgctgg 483
||||| | |||||||||||||||| | ||||| || || |||||||||||||
Sbjct: 607 tgccttcaagatcttcaccttgcggacatacacgttctggagcgggaagatgctgg 552
Score = 46.1 bits (23), Expect = 7e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 305 ctactcggcagcagcaacctcct 327
|||||||||||||||||||||||
Sbjct: 739 ctactcggcagcagcaacctcct 717
>gb|AF117889.1|AF117889 Avena fatua 40S ribosomal protein S3A mRNA, partial cds
Length = 382
Score = 99.6 bits (50), Expect = 6e-021
Identities = 98/114 (85%)
Strand = Plus / Minus
Query: 368 accaacatcctctttgtagtcgccatgaacctccatgagcttcccaagatcgaacttggg 427
||||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct: 184 accaacatcttccttgtagtcaccatgcacctccatgagcttccccagatcgaacttggg 125
Query: 428 ggccttgagtatcttcaccttgcggatgaagacgttttgaagtgggaagatgct 481
||||| | |||||||||||||||| | ||||| || || |||||||||||
Sbjct: 124 tgccttcaagatcttcaccttgcggacatacacgttctggagcgggaagatgct 71
Score = 46.1 bits (23), Expect = 7e-005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 305 ctactcggcagcagcaacctcct 327
|||||||||||||||||||||||
Sbjct: 256 ctactcggcagcagcaacctcct 234
Database: Avena_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:15 PM
Number of letters in database: 4,702,463
Number of sequences in database: 8143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2909
Number of Sequences: 8143
Number of extensions: 2909
Number of successful extensions: 776
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 8
length of query: 1197
length of database: 4,702,463
effective HSP length: 16
effective length of query: 1181
effective length of database: 4,572,175
effective search space: 5399738675
effective search space used: 5399738675
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)