BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Y13733
(1516 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|T20665.1|T20665 2673 Lambda-PRL2 Arabidopsis thaliana cD... 60 1e-006
gb|AV782420.1|AV782420 AV782420 RAFL4 Arabidopsis thaliana ... 60 1e-006
gb|AV821715.1|AV821715 AV821715 RAFL4 Arabidopsis thaliana ... 60 1e-006
gb|AV821856.1|AV821856 AV821856 RAFL4 Arabidopsis thaliana ... 60 1e-006
gb|AV442077.1|AV442077 AV442077 Arabidopsis thaliana above-... 60 1e-006
gb|AV538058.1|AV538058 AV538058 Arabidopsis thaliana roots ... 60 1e-006
gb|AV552684.1|AV552684 AV552684 Arabidopsis thaliana roots ... 60 1e-006
gb|AV565838.1|AV565838 AV565838 Arabidopsis thaliana green ... 60 1e-006
gb|AY042841.1| Arabidopsis thaliana cinnamyl alcohol dehydr... 60 1e-006
gb|AF370261.1| Arabidopsis thaliana putative cinnamyl alcoh... 60 1e-006
gb|AY063076.1| Arabidopsis thaliana putative cinnamyl alcoh... 60 1e-006
gb|AY088220.1| Arabidopsis thaliana clone 4357 mRNA, comple... 60 1e-006
gb|AY302081.1| Arabidopsis thaliana cinnamyl alcohol dehydr... 60 1e-006
ref|NM_112832.2| Arabidopsis thaliana CAD4 (CINNAMYL ALCOHO... 60 1e-006
emb|AL091251.1|CNS00UOL Arabidopsis thaliana genome survey ... 54 7e-005
gb|AV821657.1|AV821657 AV821657 RAFL4 Arabidopsis thaliana ... 54 7e-005
gb|CB259796.1|CB259796 21-E9624-013-004-J05-T7R MPIZ-ADIS-0... 54 7e-005
gb|BX841025.1|BX841025 BX841025 Arabidopsis thaliana Flower... 54 7e-005
gb|AV554034.1|AV554034 AV554034 Arabidopsis thaliana roots ... 54 7e-005
emb|AX412345.1| Sequence 109 from Patent WO0222675 54 7e-005
gb|AY034919.1| Arabidopsis thaliana putative cinnamyl alcoh... 54 7e-005
gb|AY113919.1| Arabidopsis thaliana putative cinnamyl alcoh... 54 7e-005
emb|AX507603.1| Sequence 2298 from Patent WO0216655 54 7e-005
emb|AX651542.1| Sequence 350 from Patent WO03000898 54 7e-005
emb|BX827559.1|CNS0A4CK Arabidopsis thaliana Full-length cD... 54 7e-005
gb|AY302082.1| Arabidopsis thaliana cinnamyl alcohol dehydr... 54 7e-005
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 54 7e-005
emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome... 54 7e-005
emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome... 54 7e-005
emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosom... 54 7e-005
ref|NM_119587.2| Arabidopsis thaliana CAD5 (CINNAMYL ALCOHO... 54 7e-005
ref|NM_001036711.1| Arabidopsis thaliana CAD5 (CINNAMYL ALC... 54 7e-005
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 54 7e-005
gb|AI996376.1|AI996376 701665157 A. thaliana, Columbia Col-... 52 3e-004
emb|BX823697.1|CNS0A5GF Arabidopsis thaliana Full-length cD... 52 3e-004
gb|Z34082.1|Z34082 ATTS3130 Grenoble-B Arabidopsis thaliana... 48 0.004
gb|BX838127.1|BX838127 BX838127 Arabidopsis thaliana Hormon... 48 0.004
gb|AV551366.1|AV551366 AV551366 Arabidopsis thaliana roots ... 48 0.004
gb|BP799387.1|BP799387 BP799387 RAFL14 Arabidopsis thaliana... 48 0.004
gb|BU636675.1|BU636675 010A03 Infected Arabidopsis Leaf Ara... 46 0.018
gb|AV564197.1|AV564197 AV564197 Arabidopsis thaliana green ... 46 0.018
gb|AV827937.1|AV827937 AV827937 RAFL9 Arabidopsis thaliana ... 44 0.070
gb|AV525754.1|AV525754 AV525754 Arabidopsis thaliana aboveg... 44 0.070
gb|BP807195.1|BP807195 BP807195 RAFL16 Arabidopsis thaliana... 42 0.28
gb|BP848619.1|BP848619 BP848619 RAFL21 Arabidopsis thaliana... 40 1.1
gb|BZ289952.1|BZ289952 SALK_023363.40.55.x Arabidopsis thal... 38 4.3
gb|CL476737.1|CL476737 SAIL_258_H12.v1 SAIL Collection Arab... 38 4.3
gb|BE038608.1|BE038608 AB01G10 AB Arabidopsis thaliana cDNA... 38 4.3
gb|BE845105.1|BE845105 AD06F10T7 AD A. thaliana (Col-0 gl1)... 38 4.3
gb|AV781846.1|AV781846 AV781846 RAFL4 Arabidopsis thaliana ... 38 4.3
gb|AV821407.1|AV821407 AV821407 RAFL4 Arabidopsis thaliana ... 38 4.3
gb|AV832135.1|AV832135 AV832135 RAFL11 Arabidopsis thaliana... 38 4.3
gb|AU235996.1|AU235996 AU235996 RAFL14 Arabidopsis thaliana... 38 4.3
gb|CB259568.1|CB259568 40-E9600-013-003-O09-t7r MPIZ-ADIS-0... 38 4.3
gb|CB261185.1|CB261185 22-E9406-012-002-K03-t7r MPIZ-ADIS-0... 38 4.3
gb|CD531740.1|CD531740 11N22 Arabidopsis Leaf Senescence Li... 38 4.3
gb|CK117648.1|CK117648 215b23.p1 AtM1 Arabidopsis thaliana ... 38 4.3
gb|CK118907.1|CK118907 215f11.p1 AtM1 Arabidopsis thaliana ... 38 4.3
gb|BP612587.1|BP612587 BP612587 RAFL16 Arabidopsis thaliana... 38 4.3
gb|BP807839.1|BP807839 BP807839 RAFL16 Arabidopsis thaliana... 38 4.3
gb|BP820595.1|BP820595 BP820595 RAFL19 Arabidopsis thaliana... 38 4.3
gb|BP821276.1|BP821276 BP821276 RAFL19 Arabidopsis thaliana... 38 4.3
gb|BP834665.1|BP834665 BP834665 RAFL19 Arabidopsis thaliana... 38 4.3
gb|BP856768.1|BP856768 BP856768 RAFL21 Arabidopsis thaliana... 38 4.3
gb|AF370575.1|AF370575 Arabidopsis thaliana Unknown protein... 38 4.3
gb|AF378897.1|AF378897 Arabidopsis thaliana At1g54500/F20D2... 38 4.3
gb|AY052747.1| Arabidopsis thaliana At1g54500/F20D21_31 mRN... 38 4.3
gb|AY062446.1| Arabidopsis thaliana ATP-dependent RNA helic... 38 4.3
gb|AY114637.1| Arabidopsis thaliana ATP-dependent RNA helic... 38 4.3
emb|AX506933.1| Sequence 1628 from Patent WO0216655 38 4.3
gb|AY085877.1| Arabidopsis thaliana clone 19234 mRNA, compl... 38 4.3
gb|AY088091.1| Arabidopsis thaliana clone 41181 mRNA, compl... 38 4.3
gb|AY088427.1| Arabidopsis thaliana clone 6625 mRNA, comple... 38 4.3
gb|BT008325.1| Arabidopsis thaliana At3g01680 gene, complet... 38 4.3
gb|AY144104.1| Arabidopsis thaliana hypothetical protein (A... 38 4.3
gb|AC005287.4| Arabidopsis thaliana chromosome I BAC F20D21... 38 4.3
gb|AC008148.2|AC008148 Arabidopsis thaliana chromosome I BA... 38 4.3
gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome II... 38 4.3
emb|BX841936.1|CNS09Y4H Arabidopsis thaliana Full-length cD... 38 4.3
emb|BX823918.1|CNS0A4PV Arabidopsis thaliana Full-length cD... 38 4.3
emb|BX824503.1|CNS0A7DE Arabidopsis thaliana Full-length cD... 38 4.3
emb|BX819412.1|CNS0A9ZE Arabidopsis thaliana Full-length cD... 38 4.3
emb|BX818689.1|CNS0AB2G Arabidopsis thaliana Full-length cD... 38 4.3
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 38 4.3
gb|AY649296.1| Arabidopsis thaliana hypothetical protein (A... 38 4.3
emb|AJ010463.1|ATH010463 Arabidopsis thaliana mRNA for DEAD... 38 4.3
emb|AL137082.1|ATF14P22 Arabidopsis thaliana DNA chromosome... 38 4.3
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 38 4.3
ref|NM_111034.2| Arabidopsis thaliana unknown protein AT3G0... 38 4.3
ref|NM_115713.2| Arabidopsis thaliana ATP binding / ATP-dep... 38 4.3
ref|NM_105757.2| Arabidopsis thaliana CLE17 (CLAVATA3/ESR-R... 38 4.3
ref|NM_104328.3| Arabidopsis thaliana electron transporter/... 38 4.3
ref|NM_128070.3| Arabidopsis thaliana unknown protein AT2G2... 38 4.3
ref|NM_202726.1| Arabidopsis thaliana ATP binding / ATP-dep... 38 4.3
ref|NM_001035807.1| Arabidopsis thaliana ATP binding / ATP-... 38 4.3
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 38 4.3
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 38 4.3
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 38 4.3
>gb|T20665.1|T20665 2673 Lambda-PRL2 Arabidopsis thaliana cDNA clone 90C21T7, mRNA
sequence
Length = 333
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 190 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 131
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 130 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 73
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 330 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 287
>gb|AV782420.1|AV782420 AV782420 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-E23 3',
mRNA sequence
Length = 382
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Minus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 310 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 251
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 250 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 193
>gb|AV821715.1|AV821715 AV821715 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-15-K01 5',
mRNA sequence
Length = 675
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 429 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 488
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 489 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 546
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 287 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 330
>gb|AV821856.1|AV821856 AV821856 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-17-E23 5',
mRNA sequence
Length = 694
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 429 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 488
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 489 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 546
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 287 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 330
>gb|AV442077.1|AV442077 AV442077 Arabidopsis thaliana above-ground organ two to six-week
old Arabidopsis thaliana cDNA clone APD19a07_r 5', mRNA
sequence
Length = 539
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 369 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 428
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 429 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 486
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 227 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 270
>gb|AV538058.1|AV538058 AV538058 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ109f05F 3', mRNA sequence
Length = 623
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 388 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 447
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 448 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 505
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 246 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 289
>gb|AV552684.1|AV552684 AV552684 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ36a09R 5', mRNA sequence
Length = 567
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 398 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 457
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 458 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 515
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 256 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 299
>gb|AV565838.1|AV565838 AV565838 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ231g01F 3', mRNA sequence
Length = 547
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 291 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 350
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 351 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 408
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 149 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 192
>gb|AY042841.1| Arabidopsis thaliana cinnamyl alcohol dehydrogenase 2 (MLD14.19)
mRNA, partial cds
Length = 736
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 428 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 487
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 488 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 545
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 286 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 329
>gb|AF370261.1| Arabidopsis thaliana putative cinnamyl alcohol dehydrogenase
(At3g19450) mRNA, complete cds
Length = 1410
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 428 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 487
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 488 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 545
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 286 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 329
>gb|AY063076.1| Arabidopsis thaliana putative cinnamyl alcohol dehydrogenase
(At3g19450) mRNA, complete cds
Length = 1129
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 332 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 391
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 392 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 449
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 190 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 233
>gb|AY088220.1| Arabidopsis thaliana clone 4357 mRNA, complete sequence
Length = 1389
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 424 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 483
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 484 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 541
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 282 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 325
>gb|AY302081.1| Arabidopsis thaliana cinnamyl alcohol dehydrogenase (CAD4) mRNA,
complete cds
Length = 1098
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 332 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 391
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 392 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 449
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 190 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 233
>ref|NM_112832.2| Arabidopsis thaliana CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4);
cinnamyl-alcohol dehydrogenase AT3G19450 (CAD4) mRNA,
complete cds
Length = 1403
Score = 60.0 bits (30), Expect = 1e-006
Identities = 96/118 (81%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 428 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 487
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || |||||||||||||||||
Sbjct: 488 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaaaagtttgtggtgaagat 545
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 286 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 329
>emb|AL091251.1|CNS00UOL Arabidopsis thaliana genome survey sequence SP6 end of BAC T7I8 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 510
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 330 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 271
Query: 653 gggctga 659
|| ||||
Sbjct: 270 ggtctga 264
>gb|AV821657.1|AV821657 AV821657 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-14-P24 5',
mRNA sequence
Length = 662
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 519 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 578
Query: 653 gggctga 659
|| ||||
Sbjct: 579 ggtctga 585
>gb|CB259796.1|CB259796 21-E9624-013-004-J05-T7R MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770J054Q 5-PRIME, mRNA sequence
Length = 587
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 458 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 517
Query: 653 gggctga 659
|| ||||
Sbjct: 518 ggtctga 524
>gb|BX841025.1|BX841025 BX841025 Arabidopsis thaliana Flowers and buds Col-0 Arabidopsis
thaliana cDNA clone GSLTFB21ZD12 5PRIM, mRNA sequence
Length = 1086
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 506 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 565
Query: 653 gggctga 659
|| ||||
Sbjct: 566 ggtctga 572
>gb|AV554034.1|AV554034 AV554034 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ79b05R 5', mRNA sequence
Length = 462
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 237 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 296
Query: 653 gggctga 659
|| ||||
Sbjct: 297 ggtctga 303
>emb|AX412345.1| Sequence 109 from Patent WO0222675
Length = 1074
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 466 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 525
Query: 653 gggctga 659
|| ||||
Sbjct: 526 ggtctga 532
>gb|AY034919.1| Arabidopsis thaliana putative cinnamyl alcohol dehydrogenase
(At4g34230) mRNA, complete cds
Length = 1306
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 519 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 578
Query: 653 gggctga 659
|| ||||
Sbjct: 579 ggtctga 585
>gb|AY113919.1| Arabidopsis thaliana putative cinnamyl alcohol dehydrogenase
(At4g34230) mRNA, complete cds
Length = 1105
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 466 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 525
Query: 653 gggctga 659
|| ||||
Sbjct: 526 ggtctga 532
>emb|AX507603.1| Sequence 2298 from Patent WO0216655
Length = 1074
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 466 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 525
Query: 653 gggctga 659
|| ||||
Sbjct: 526 ggtctga 532
>emb|AX651542.1| Sequence 350 from Patent WO03000898
Length = 1074
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 466 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 525
Query: 653 gggctga 659
|| ||||
Sbjct: 526 ggtctga 532
>emb|BX827559.1|CNS0A4CK Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS73ZE08 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1285
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 506 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 565
Query: 653 gggctga 659
|| ||||
Sbjct: 566 ggtctga 572
>gb|AY302082.1| Arabidopsis thaliana cinnamyl alcohol dehydrogenase (CAD5) mRNA,
complete cds
Length = 1074
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 466 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 525
Query: 653 gggctga 659
|| ||||
Sbjct: 526 ggtctga 532
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 12300384 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 12300325
Query: 653 gggctga 659
|| ||||
Sbjct: 12300324 ggtctga 12300318
>emb|AL035521.1|ATF10M10 Arabidopsis thaliana DNA chromosome 4, BAC clone F10M10 (ESSA project)
Length = 114367
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 24776 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 24717
Query: 653 gggctga 659
|| ||||
Sbjct: 24716 ggtctga 24710
>emb|AL021961.2|ATF28A23 Arabidopsis thaliana DNA chromosome 4, BAC clone F28A23 (ESSA project)
Length = 94091
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 91106 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 91047
Query: 653 gggctga 659
|| ||||
Sbjct: 91046 ggtctga 91040
>emb|AL161585.2|ATCHRIV81 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 81
Length = 195921
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 33294 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 33235
Query: 653 gggctga 659
|| ||||
Sbjct: 33234 ggtctga 33228
>ref|NM_119587.2| Arabidopsis thaliana CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5);
cinnamyl-alcohol dehydrogenase AT4G34230 (CAD5)
transcript variant AT4G34230.1 mRNA, complete cds
Length = 1297
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 519 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 578
Query: 653 gggctga 659
|| ||||
Sbjct: 579 ggtctga 585
>ref|NM_001036711.1| Arabidopsis thaliana CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5)
AT4G34230 (CAD5) transcript variant AT4G34230.2 mRNA,
complete cds
Length = 1306
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 519 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 578
Query: 653 gggctga 659
|| ||||
Sbjct: 579 ggtctga 585
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 54.0 bits (27), Expect = 7e-005
Identities = 57/67 (85%)
Strand = Plus / Minus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||||| ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 16387602 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccacttt 16387543
Query: 653 gggctga 659
|| ||||
Sbjct: 16387542 ggtctga 16387536
>gb|AI996376.1|AI996376 701665157 A. thaliana, Columbia Col-0, root-1 Arabidopsis thaliana
cDNA clone 701665157, mRNA sequence
Length = 561
Score = 52.0 bits (26), Expect = 3e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 602 gcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcactttgggctga 659
|||||||| ||||||||||| ||||| |||||||| || |||| |||||||| ||||
Sbjct: 152 gcgccgctactgtgcgctggtgtgactgtgtacagtccactgagccactttggtctga 95
>emb|BX823697.1|CNS0A5GF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS68ZE05 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1288
Score = 52.0 bits (26), Expect = 3e-004
Identities = 95/118 (80%)
Strand = Plus / Plus
Query: 456 ttgagcagtactgcaacaagaagatctggtcatacaacgacgtctacactgatggacggc 515
|||||||||| || ||||||| |||||| |||||||| |||||||| |||||| |
Sbjct: 412 ttgagcagtattgtaacaagagaatctggagttacaacgatgtctacaccgatggaaaac 471
Query: 516 ccacgcagggtggattcgcctccaccatggtcgtcgaccagaagtttgtggtgaagat 573
| || || ||||| |||||| ||||||| ||||| | || ||||||||||||||||
Sbjct: 472 ctactcaaggtggcttcgccgacaccatgatcgtcaatcaagagtttgtggtgaagat 529
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 270 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 313
>gb|Z34082.1|Z34082 ATTS3130 Grenoble-B Arabidopsis thaliana cDNA clone GBGe337 5',
mRNA sequence
Length = 273
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 197 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 240
>gb|BX838127.1|BX838127 BX838127 Arabidopsis thaliana Hormone Treated Callus Col-0
Arabidopsis thaliana cDNA clone GSLTPGH7ZH01 5PRIM, mRNA
sequence
Length = 935
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 272 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 315
>gb|AV551366.1|AV551366 AV551366 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ125g08R 5', mRNA sequence
Length = 397
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 246 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 289
>gb|BP799387.1|BP799387 BP799387 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-10-N16 5',
mRNA sequence
Length = 419
Score = 48.1 bits (24), Expect = 0.004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||| |||||||||||||| || || |||||| ||||
Sbjct: 285 tatcctatggttcctgggcacgaggtagtaggtgaggtgttgga 328
>gb|BU636675.1|BU636675 010A03 Infected Arabidopsis Leaf Arabidopsis thaliana cDNA, mRNA
sequence
Length = 638
Score = 46.1 bits (23), Expect = 0.018
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtacagcccgctgaagcacttt 652
||||| || |||||| | ||||||||||| ||||| |||||||| || |||| ||||||
Sbjct: 468 gagcaggctgcgccgttactgtgcgctggtgtgactgtgtacagtccactgagccacttt 527
Query: 653 gggctga 659
|| ||||
Sbjct: 528 ggtctga 534
>gb|AV564197.1|AV564197 AV564197 Arabidopsis thaliana green siliques Columbia Arabidopsis
thaliana cDNA clone SQ200f03F 3', mRNA sequence
Length = 405
Score = 46.1 bits (23), Expect = 0.018
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgacggtgtaca 635
||||| || |||||||| ||||||||||| ||||| |||||||
Sbjct: 363 gagcaggctgcgccgctactgtgcgctggtgtgactgtgtaca 405
>gb|AV827937.1|AV827937 AV827937 RAFL9 Arabidopsis thaliana cDNA clone RAFL09-22-D09 5',
mRNA sequence
Length = 462
Score = 44.1 bits (22), Expect = 0.070
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggt 339
||||||||||| ||||||||||||||
Sbjct: 287 tatcctatggttcctgggcacgaggt 312
>gb|AV525754.1|AV525754 AV525754 Arabidopsis thaliana aboveground organs two to six-week
old Arabidopsis thaliana cDNA clone APD30a05R 5', mRNA
sequence
Length = 482
Score = 44.1 bits (22), Expect = 0.070
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggt 339
||||||||||| ||||||||||||||
Sbjct: 246 tatcctatggttcctgggcacgaggt 271
>gb|BP807195.1|BP807195 BP807195 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-12-M11 5',
mRNA sequence
Length = 399
Score = 42.1 bits (21), Expect = 0.28
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgagg 338
||||||||||| |||||||||||||
Sbjct: 289 tatcctatggttcctgggcacgagg 313
>gb|BP848619.1|BP848619 BP848619 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-06-A22 5',
mRNA sequence
Length = 404
Score = 40.1 bits (20), Expect = 1.1
Identities = 39/44 (88%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 314 tatcctatggtccctgggcacgaggtggtcggcgaggtggtgga 357
||||||||||||| |||||||||||| || || |||||| ||||
Sbjct: 286 tatcctatggtcc-tgggcacgaggtagtaggtgaggtgttgga 328
>gb|BZ289952.1|BZ289952 SALK_023363.40.55.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_023363.40.55.x,
DNA sequence
Length = 225
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 928 ggacggcaagctcgtgctg 946
|||||||||||||||||||
Sbjct: 3 ggacggcaagctcgtgctg 21
>gb|CL476737.1|CL476737 SAIL_258_H12.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_258_H12.v1, DNA sequence
Length = 1853
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 1444 ggcggaggcggcggcggcg 1462
>gb|BE038608.1|BE038608 AB01G10 AB Arabidopsis thaliana cDNA 5', mRNA sequence
Length = 687
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 230 tgaagatgtggtggtgaag 212
>gb|BE845105.1|BE845105 AD06F10T7 AD A. thaliana (Col-0 gl1) subtracted library enriched
for salt-induced transcripts;10-14 day seedlings 4h
160mM NaCl stress Arabidopsis thaliana cDNA clone
AD06F10 similar to cinnamyl-alcohol dehydrogenase (EC
1.1.1.195), mRNA sequence
Length = 473
Score = 38.2 bits (19), Expect = 4.3
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 593 gagcaagcggcgccgctgctgtgcgctggcgtgac 627
||||| || |||||||| ||||||||||| |||||
Sbjct: 38 gagcaggctgcgccgctactgtgcgctggtgtgac 4
>gb|AV781846.1|AV781846 AV781846 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-09-M24 3',
mRNA sequence
Length = 563
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 542 tgaagatgtggtggtgaag 560
>gb|AV821407.1|AV821407 AV821407 RAFL4 Arabidopsis thaliana cDNA clone RAFL04-09-M24 5',
mRNA sequence
Length = 521
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 177 tgaagatgtggtggtgaag 159
>gb|AV832135.1|AV832135 AV832135 RAFL11 Arabidopsis thaliana cDNA clone RAFL11-03-K23 5',
mRNA sequence
Length = 564
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 157 tgaagatgtggtggtgaag 139
>gb|AU235996.1|AU235996 AU235996 RAFL14 Arabidopsis thaliana cDNA clone RAFL14-57-L01 5',
mRNA sequence
Length = 607
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 928 ggacggcaagctcgtgctg 946
|||||||||||||||||||
Sbjct: 481 ggacggcaagctcgtgctg 499
>gb|CB259568.1|CB259568 40-E9600-013-003-O09-t7r MPIZ-ADIS-013 Arabidopsis thaliana cDNA
clone MPIZp770O093Q 5-PRIME, mRNA sequence
Length = 595
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 162 tgaagatgtggtggtgaag 144
>gb|CB261185.1|CB261185 22-E9406-012-002-K03-t7r MPIZ-ADIS-012 Arabidopsis thaliana cDNA
clone MPIZp769K032Q 5-PRIME, mRNA sequence
Length = 628
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 141 tgaagatgtggtggtgaag 123
>gb|CD531740.1|CD531740 11N22 Arabidopsis Leaf Senescence Library Arabidopsis thaliana cDNA
3', mRNA sequence
Length = 500
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 42 gaggaggaggcggcggcggcgga 64
>gb|CK117648.1|CK117648 215b23.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011B23215
5-PRIME, mRNA sequence
Length = 661
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 157 tgaagatgtggtggtgaag 139
>gb|CK118907.1|CK118907 215f11.p1 AtM1 Arabidopsis thaliana cDNA clone MPMGp2011F11215
5-PRIME, mRNA sequence
Length = 643
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 149 tgaagatgtggtggtgaag 131
>gb|BP612587.1|BP612587 BP612587 RAFL16 Arabidopsis thaliana cDNA clone RAFL16-90-B21 3',
mRNA sequence
Length = 427
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 255 gaggaggaggcggcggcggcgga 233
>gb|BP807839.1|BP807839 BP807839 RAFL16 Arabidopsis thaliana cDNA clone RAFL24-15-G21 5',
mRNA sequence
Length = 403
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 171 tgaagatgtggtggtgaag 153
>gb|BP820595.1|BP820595 BP820595 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-55-B01 5',
mRNA sequence
Length = 390
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 196 tgaagatgtggtggtgaag 178
>gb|BP821276.1|BP821276 BP821276 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-57-H09 5',
mRNA sequence
Length = 387
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 196 tgaagatgtggtggtgaag 178
>gb|BP834665.1|BP834665 BP834665 RAFL19 Arabidopsis thaliana cDNA clone RAFL22-11-A03 5',
mRNA sequence
Length = 383
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 175 tgaagatgtggtggtgaag 157
>gb|BP856768.1|BP856768 BP856768 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-31-E02 5',
mRNA sequence
Length = 418
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 173 tgaagatgtggtggtgaag 155
>gb|AF370575.1|AF370575 Arabidopsis thaliana Unknown protein (F20D21.31) mRNA, complete cds
Length = 638
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 124 tgaagatgtggtggtgaag 106
>gb|AF378897.1|AF378897 Arabidopsis thaliana At1g54500/F20D21_31 mRNA, complete cds
Length = 717
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 176 tgaagatgtggtggtgaag 158
>gb|AY052747.1| Arabidopsis thaliana At1g54500/F20D21_31 mRNA, complete cds
Length = 588
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 124 tgaagatgtggtggtgaag 106
>gb|AY062446.1| Arabidopsis thaliana ATP-dependent RNA helicase-like protein
(At3g58510; F14P22.100) mRNA, complete cds
Length = 1856
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 1397 gaggaggaggcggcggcggcgga 1419
>gb|AY114637.1| Arabidopsis thaliana ATP-dependent RNA helicase-like protein
(At3g58510) mRNA, complete cds
Length = 1296
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 1139 gaggaggaggcggcggcggcgga 1161
>emb|AX506933.1| Sequence 1628 from Patent WO0216655
Length = 588
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 124 tgaagatgtggtggtgaag 106
>gb|AY085877.1| Arabidopsis thaliana clone 19234 mRNA, complete sequence
Length = 749
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 241 tgaagatgtggtggtgaag 223
>gb|AY088091.1| Arabidopsis thaliana clone 41181 mRNA, complete sequence
Length = 2348
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 1890 gaggaggaggcggcggcggcgga 1912
>gb|AY088427.1| Arabidopsis thaliana clone 6625 mRNA, complete sequence
Length = 730
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 330 ggcggaggcggcggcggcg 312
>gb|BT008325.1| Arabidopsis thaliana At3g01680 gene, complete cds
Length = 2223
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 928 ggacggcaagctcgtgctg 946
|||||||||||||||||||
Sbjct: 429 ggacggcaagctcgtgctg 447
>gb|AY144104.1| Arabidopsis thaliana hypothetical protein (At2g25130/F13D4.90) mRNA,
complete cds
Length = 1523
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
||||||||||||| |||||||||
Sbjct: 367 gaggcggaggcggaggcggcgga 389
>gb|AC005287.4| Arabidopsis thaliana chromosome I BAC F20D21 genomic sequence, complete
sequence
Length = 143186
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 129046 tgaagatgtggtggtgaag 129064
>gb|AC008148.2|AC008148 Arabidopsis thaliana chromosome I BAC F15H11 genomic sequence, complete
sequence
Length = 110514
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 45954 ggcggaggcggcggcggcg 45936
>gb|AC009325.8|ATAC009325 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence,
complete sequence
Length = 105543
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 928 ggacggcaagctcgtgctg 946
|||||||||||||||||||
Sbjct: 74875 ggacggcaagctcgtgctg 74893
>emb|BX841936.1|CNS09Y4H Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL49ZE05 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 722
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 324 ggcggaggcggcggcggcg 306
>emb|BX823918.1|CNS0A4PV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS92ZB07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2476
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 2053 gaggaggaggcggcggcggcgga 2075
>emb|BX824503.1|CNS0A7DE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH52ZH10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 2421
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 928 ggacggcaagctcgtgctg 946
|||||||||||||||||||
Sbjct: 467 ggacggcaagctcgtgctg 485
>emb|BX819412.1|CNS0A9ZE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB76ZA03 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1490
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
||||||||||||| |||||||||
Sbjct: 390 gaggcggaggcggaggcggcgga 412
>emb|BX818689.1|CNS0AB2G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTSIL92ZA06 of Silique of strain col-0 of Arabidopsis
thaliana (thale cress)
Length = 734
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 324 ggcggaggcggcggcggcg 306
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 21601882 gaggaggaggcggcggcggcgga 21601904
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 928 ggacggcaagctcgtgctg 946
|||||||||||||||||||
Sbjct: 252893 ggacggcaagctcgtgctg 252911
>gb|AY649296.1| Arabidopsis thaliana hypothetical protein (At2g25130) mRNA, complete
cds
Length = 1407
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
||||||||||||| |||||||||
Sbjct: 349 gaggcggaggcggaggcggcgga 371
>emb|AJ010463.1|ATH010463 Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH11
Length = 1027
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 548 gaggaggaggcggcggcggcgga 570
>emb|AL137082.1|ATF14P22 Arabidopsis thaliana DNA chromosome 3, BAC clone F14P22
Length = 94239
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 36838 gaggaggaggcggcggcggcgga 36860
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 10969668 ggcggaggcggcggcggcg 10969650
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 4716810 tgaagatgtggtggtgaag 4716828
>ref|NM_111034.2| Arabidopsis thaliana unknown protein AT3G01680 mRNA, complete cds
Length = 2542
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 928 ggacggcaagctcgtgctg 946
|||||||||||||||||||
Sbjct: 481 ggacggcaagctcgtgctg 499
>ref|NM_115713.2| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
nucleic acid binding AT3G58510 transcript variant
AT3G58510.1 mRNA, complete cds
Length = 2348
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 1890 gaggaggaggcggcggcggcgga 1912
>ref|NM_105757.2| Arabidopsis thaliana CLE17 (CLAVATA3/ESR-RELATED 17); receptor
binding AT1G70895 (CLE17) mRNA, complete cds
Length = 856
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 456 ggcggaggcggcggcggcg 438
>ref|NM_104328.3| Arabidopsis thaliana electron transporter/ metal ion binding
AT1G54500 mRNA, complete cds
Length = 835
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 241 tgaagatgtggtggtgaag 223
>ref|NM_128070.3| Arabidopsis thaliana unknown protein AT2G25130 mRNA, complete cds
Length = 1508
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
||||||||||||| |||||||||
Sbjct: 390 gaggcggaggcggaggcggcgga 412
>ref|NM_202726.1| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
nucleic acid binding AT3G58510 transcript variant
AT3G58510.2 mRNA, complete cds
Length = 2508
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 2050 gaggaggaggcggcggcggcgga 2072
>ref|NM_001035807.1| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
nucleic acid binding AT3G58510 transcript variant
AT3G58510.3 mRNA, complete cds
Length = 2438
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 1980 gaggaggaggcggcggcggcgga 2002
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 1193 gaggcggaggcggcggcggcgga 1215
||||||||||||| |||||||||
Sbjct: 10703690 gaggcggaggcggaggcggcgga 10703668
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 38.2 bits (19), Expect = 4.3
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1193 gaggcggaggcggcggcggcgga 1215
|||| ||||||||||||||||||
Sbjct: 21654314 gaggaggaggcggcggcggcgga 21654336
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 928 ggacggcaagctcgtgctg 946
|||||||||||||||||||
Sbjct: 252891 ggacggcaagctcgtgctg 252909
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1195 ggcggaggcggcggcggcg 1213
|||||||||||||||||||
Sbjct: 26732016 ggcggaggcggcggcggcg 26731998
Score = 38.2 bits (19), Expect = 4.3
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 229 tgaagatgtggtggtgaag 247
|||||||||||||||||||
Sbjct: 20361215 tgaagatgtggtggtgaag 20361233
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 474,424
Number of Sequences: 1013581
Number of extensions: 474424
Number of successful extensions: 36078
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 34411
Number of HSP's gapped (non-prelim): 1648
length of query: 1516
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1495
effective length of database: 887,655,671
effective search space: 1327045228145
effective search space used: 1327045228145
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)