BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064D08F020918.3.1
(559 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AL091999.1|CNS00V9D Arabidopsis thaliana genome survey ... 40 0.40
gb|AV782811.1|AV782811 AV782811 RAFL5 Arabidopsis thaliana ... 40 0.40
gb|AY079030.1| Arabidopsis thaliana AT5g59210/mnc17_100 mRN... 40 0.40
gb|AY113009.1| Arabidopsis thaliana AT5g59210/mnc17_100 mRN... 40 0.40
dbj|AB016890.1| Arabidopsis thaliana genomic DNA, chromosom... 40 0.40
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 40 0.40
ref|NM_180888.1| Arabidopsis thaliana unknown protein AT5G5... 40 0.40
ref|NM_125311.3| Arabidopsis thaliana unknown protein AT5G5... 40 0.40
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 40 0.40
emb|AL080725.1|CNS00MK7 Arabidopsis thaliana genome survey ... 36 6.2
emb|AL091329.1|CNS00UQR Arabidopsis thaliana genome survey ... 36 6.2
gb|CC054969.1|CC054969 SALK_080414.55.75.x Arabidopsis thal... 36 6.2
gb|CL476075.1|CL476075 SAIL_249_C01.v1 SAIL Collection Arab... 36 6.2
gb|BP855992.1|BP855992 BP855992 RAFL21 Arabidopsis thaliana... 36 6.2
gb|AF001415.1|AF001415 Arabidopsis thaliana 14-3-3-like pro... 36 6.2
dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosom... 36 6.2
dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosom... 36 6.2
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 36 6.2
emb|AL132954.1|ATT26I12 Arabidopsis thaliana DNA chromosome... 36 6.2
emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome ... 36 6.2
emb|AL391146.1|ATF2G14 Arabidopsis thaliana DNA chromosome ... 36 6.2
ref|NM_115390.1| Arabidopsis thaliana ATPase, coupled to tr... 36 6.2
ref|NM_121506.2| Arabidopsis thaliana unknown protein AT5G1... 36 6.2
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 36 6.2
>emb|AL091999.1|CNS00V9D Arabidopsis thaliana genome survey sequence T7 end of BAC T9A15 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 324
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 233 ttgtccagaacttcacggag 252
||||||||||||||||||||
Sbjct: 116 ttgtccagaacttcacggag 97
>gb|AV782811.1|AV782811 AV782811 RAFL5 Arabidopsis thaliana cDNA clone RAFL05-01-N13 3',
mRNA sequence
Length = 681
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 233 ttgtccagaacttcacggag 252
||||||||||||||||||||
Sbjct: 448 ttgtccagaacttcacggag 467
>gb|AY079030.1| Arabidopsis thaliana AT5g59210/mnc17_100 mRNA, complete cds
Length = 1517
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 233 ttgtccagaacttcacggag 252
||||||||||||||||||||
Sbjct: 1071 ttgtccagaacttcacggag 1052
>gb|AY113009.1| Arabidopsis thaliana AT5g59210/mnc17_100 mRNA, complete cds
Length = 1305
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 233 ttgtccagaacttcacggag 252
||||||||||||||||||||
Sbjct: 1025 ttgtccagaacttcacggag 1006
>dbj|AB016890.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC17
Length = 75803
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 233 ttgtccagaacttcacggag 252
||||||||||||||||||||
Sbjct: 30526 ttgtccagaacttcacggag 30545
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 233 ttgtccagaacttcacggag 252
||||||||||||||||||||
Sbjct: 21246567 ttgtccagaacttcacggag 21246586
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 60 gagtagtgatgggttgcc 77
||||||||||||||||||
Sbjct: 19525663 gagtagtgatgggttgcc 19525646
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 484 tatggaaacaaatggtgt 501
||||||||||||||||||
Sbjct: 18820703 tatggaaacaaatggtgt 18820686
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 419 cagcaataaacaaagagc 436
||||||||||||||||||
Sbjct: 5028430 cagcaataaacaaagagc 5028447
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 218 ctcctcacaagaaaattg 235
||||||||||||||||||
Sbjct: 4645092 ctcctcacaagaaaattg 4645109
>ref|NM_180888.1| Arabidopsis thaliana unknown protein AT5G59210 transcript variant
AT5G59210.1 mRNA, complete cds
Length = 1517
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 233 ttgtccagaacttcacggag 252
||||||||||||||||||||
Sbjct: 1071 ttgtccagaacttcacggag 1052
>ref|NM_125311.3| Arabidopsis thaliana unknown protein AT5G59210 transcript variant
AT5G59210.2 mRNA, complete cds
Length = 1514
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 233 ttgtccagaacttcacggag 252
||||||||||||||||||||
Sbjct: 1068 ttgtccagaacttcacggag 1049
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 233 ttgtccagaacttcacggag 252
||||||||||||||||||||
Sbjct: 23908480 ttgtccagaacttcacggag 23908499
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 60 gagtagtgatgggttgcc 77
||||||||||||||||||
Sbjct: 21811612 gagtagtgatgggttgcc 21811595
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 484 tatggaaacaaatggtgt 501
||||||||||||||||||
Sbjct: 20966652 tatggaaacaaatggtgt 20966635
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 419 cagcaataaacaaagagc 436
||||||||||||||||||
Sbjct: 5245457 cagcaataaacaaagagc 5245474
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 218 ctcctcacaagaaaattg 235
||||||||||||||||||
Sbjct: 4862119 ctcctcacaagaaaattg 4862136
>emb|AL080725.1|CNS00MK7 Arabidopsis thaliana genome survey sequence T7 end of BAC F1L1 of
IGF library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 528
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 419 cagcaataaacaaagagc 436
||||||||||||||||||
Sbjct: 332 cagcaataaacaaagagc 315
>emb|AL091329.1|CNS00UQR Arabidopsis thaliana genome survey sequence T7 end of BAC T7L2 of
TAMU library from strain Columbia of Arabidopsis
thaliana, genomic survey sequence
Length = 534
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 484 tatggaaacaaatggtgt 501
||||||||||||||||||
Sbjct: 62 tatggaaacaaatggtgt 79
>gb|CC054969.1|CC054969 SALK_080414.55.75.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_080414.55.75.x,
DNA sequence
Length = 421
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 419 cagcaataaacaaagagc 436
||||||||||||||||||
Sbjct: 240 cagcaataaacaaagagc 223
>gb|CL476075.1|CL476075 SAIL_249_C01.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_249_C01.v1, DNA sequence
Length = 944
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 484 tatggaaacaaatggtgt 501
||||||||||||||||||
Sbjct: 625 tatggaaacaaatggtgt 608
>gb|BP855992.1|BP855992 BP855992 RAFL21 Arabidopsis thaliana cDNA clone RAFL25-28-H22 5',
mRNA sequence
Length = 404
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 132 ggttgctgaagacatgtt 149
||||||||||||||||||
Sbjct: 164 ggttgctgaagacatgtt 181
>gb|AF001415.1|AF001415 Arabidopsis thaliana 14-3-3-like protein GF14 upsilon (GRF5) gene,
complete cds
Length = 4362
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 419 cagcaataaacaaagagc 436
||||||||||||||||||
Sbjct: 1226 cagcaataaacaaagagc 1209
>dbj|AB015476.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MNC6
Length = 82952
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 60 gagtagtgatgggttgcc 77
||||||||||||||||||
Sbjct: 80619 gagtagtgatgggttgcc 80602
>dbj|AB018109.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K17N15
Length = 81293
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 484 tatggaaacaaatggtgt 501
||||||||||||||||||
Sbjct: 48001 tatggaaacaaatggtgt 47984
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 305 cactaaagcaaatggtaa 322
||||||||||||||||||
Sbjct: 20472986 cactaaagcaaatggtaa 20472969
>emb|AL132954.1|ATT26I12 Arabidopsis thaliana DNA chromosome 3, BAC clone T26I12
Length = 88997
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 305 cactaaagcaaatggtaa 322
||||||||||||||||||
Sbjct: 77915 cactaaagcaaatggtaa 77898
>emb|AL391145.1|ATF1N13 Arabidopsis thaliana DNA chromosome 5, BAC clone F1N13 (ESSA project)
Length = 74687
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 419 cagcaataaacaaagagc 436
||||||||||||||||||
Sbjct: 64164 cagcaataaacaaagagc 64181
>emb|AL391146.1|ATF2G14 Arabidopsis thaliana DNA chromosome 5, BAC clone F2G14 (ESSA project)
Length = 85992
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 218 ctcctcacaagaaaattg 235
||||||||||||||||||
Sbjct: 46865 ctcctcacaagaaaattg 46882
>ref|NM_115390.1| Arabidopsis thaliana ATPase, coupled to transmembrane movement of
substances AT3G55320 mRNA, complete cds
Length = 4227
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 305 cactaaagcaaatggtaa 322
||||||||||||||||||
Sbjct: 2409 cactaaagcaaatggtaa 2426
>ref|NM_121506.2| Arabidopsis thaliana unknown protein AT5G15020 mRNA, complete cds
Length = 4404
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 218 ctcctcacaagaaaattg 235
||||||||||||||||||
Sbjct: 2241 ctcctcacaagaaaattg 2224
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 36.2 bits (18), Expect = 6.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 305 cactaaagcaaatggtaa 322
||||||||||||||||||
Sbjct: 20520513 cactaaagcaaatggtaa 20520496
Database: At_nucl_with_EST.fasta
Posted date: May 2, 2006 2:53 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 279,266
Number of Sequences: 1013581
Number of extensions: 279266
Number of successful extensions: 19887
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18878
Number of HSP's gapped (non-prelim): 1009
length of query: 559
length of database: 908,940,872
effective HSP length: 20
effective length of query: 539
effective length of database: 888,669,252
effective search space: 478992726828
effective search space used: 478992726828
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)