BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD4g02.sg.2.1
(308 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY084615.1| Arabidopsis thaliana clone 11330 mRNA, compl... 48 9e-004
gb|BT008539.1| Arabidopsis thaliana clone U51171 putative U... 48 9e-004
emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long... 48 9e-004
dbj|AK118722.1| Arabidopsis thaliana At4g23920 mRNA for put... 48 9e-004
emb|AL078468.1|ATT32A16 Arabidopsis thaliana DNA chromosome... 48 9e-004
emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosom... 48 9e-004
ref|NM_118524.2| Arabidopsis thaliana NAD binding / UDP-glu... 48 9e-004
ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complet... 48 9e-004
emb|BX663925.1| Arabidopsis thaliana transposon insertion S... 46 0.003
gb|BZ660593.1|BZ660593 SALK_024044.33.30.x Arabidopsis thal... 44 0.014
gb|AY140073.1| Arabidopsis thaliana UDP-galactose 4-epimera... 40 0.21
gb|AY065354.1| Arabidopsis thaliana putative UDP-galactose ... 40 0.21
gb|AY117180.1| Arabidopsis thaliana putative UDP-galactose ... 40 0.21
gb|AY085528.1| Arabidopsis thaliana clone 15608 mRNA, compl... 40 0.21
emb|BX827643.1|CNS0A2DZ Arabidopsis thaliana Full-length cD... 40 0.21
emb|BX827147.1|CNS0A3P3 Arabidopsis thaliana Full-length cD... 40 0.21
emb|BX827895.1|CNS0A3UR Arabidopsis thaliana Full-length cD... 40 0.21
emb|BX826665.1|CNS0A44W Arabidopsis thaliana Full-length cD... 40 0.21
ref|NM_117165.2| Arabidopsis thaliana triacylglycerol lipas... 40 0.21
ref|NM_117166.2| Arabidopsis thaliana NAD binding / UDP-glu... 40 0.21
>gb|AY084615.1| Arabidopsis thaliana clone 11330 mRNA, complete sequence
Length = 1316
Score = 48.1 bits (24), Expect = 9e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 138 tcttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatg 197
||||| || ||||| || || ||||| || ||||| ||||||||||| || |||| ||||
Sbjct: 652 tcttcaccaatgtaaccactaggatgtgcaccaacagggttgaagtatctaagcaatatg 593
Query: 198 atcttcca 205
||||||||
Sbjct: 592 atcttcca 585
>gb|BT008539.1| Arabidopsis thaliana clone U51171 putative UDPglucose 4-epimerase
(At4g23920) mRNA, complete cds
Length = 1084
Score = 48.1 bits (24), Expect = 9e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 138 tcttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatg 197
||||| || ||||| || || ||||| || ||||| ||||||||||| || |||| ||||
Sbjct: 587 tcttcaccaatgtaaccactaggatgtgcaccaacagggttgaagtatctaagcaatatg 528
Query: 198 atcttcca 205
||||||||
Sbjct: 527 atcttcca 520
>emb|AJ270060.1| Arabidopsis thaliana DNA chromosome 4, long arm
Length = 14497843
Score = 48.1 bits (24), Expect = 9e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 138 tcttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatg 197
||||| || ||||| || || ||||| || ||||| ||||||||||| || |||| ||||
Sbjct: 8345479 tcttcaccaatgtaaccactaggatgtgcaccaacagggttgaagtatctaagcaatatg 8345420
Query: 198 atcttcca 205
||||||||
Sbjct: 8345419 atcttcca 8345412
>dbj|AK118722.1| Arabidopsis thaliana At4g23920 mRNA for putative UDPglucose
4-epimerase, complete cds, clone: RAFL21-04-N18
Length = 1393
Score = 48.1 bits (24), Expect = 9e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 138 tcttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatg 197
||||| || ||||| || || ||||| || ||||| ||||||||||| || |||| ||||
Sbjct: 737 tcttcaccaatgtaaccactaggatgtgcaccaacagggttgaagtatctaagcaatatg 678
Query: 198 atcttcca 205
||||||||
Sbjct: 677 atcttcca 670
>emb|AL078468.1|ATT32A16 Arabidopsis thaliana DNA chromosome 4, BAC clone T32A16 (ESSA project)
Length = 89826
Score = 48.1 bits (24), Expect = 9e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 138 tcttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatg 197
||||| || ||||| || || ||||| || ||||| ||||||||||| || |||| ||||
Sbjct: 42186 tcttcaccaatgtaaccactaggatgtgcaccaacagggttgaagtatctaagcaatatg 42127
Query: 198 atcttcca 205
||||||||
Sbjct: 42126 atcttcca 42119
>emb|AL161560.2|ATCHRIV60 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 60
Length = 196677
Score = 48.1 bits (24), Expect = 9e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 138 tcttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatg 197
||||| || ||||| || || ||||| || ||||| ||||||||||| || |||| ||||
Sbjct: 92092 tcttcaccaatgtaaccactaggatgtgcaccaacagggttgaagtatctaagcaatatg 92033
Query: 198 atcttcca 205
||||||||
Sbjct: 92032 atcttcca 92025
>ref|NM_118524.2| Arabidopsis thaliana NAD binding / UDP-glucose 4-epimerase/
catalytic AT4G23920 mRNA, complete cds
Length = 1390
Score = 48.1 bits (24), Expect = 9e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 138 tcttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatg 197
||||| || ||||| || || ||||| || ||||| ||||||||||| || |||| ||||
Sbjct: 726 tcttcaccaatgtaaccactaggatgtgcaccaacagggttgaagtatctaagcaatatg 667
Query: 198 atcttcca 205
||||||||
Sbjct: 666 atcttcca 659
>ref|NC_003075.3| Arabidopsis thaliana chromosome 4, complete sequence
Length = 18585042
Score = 48.1 bits (24), Expect = 9e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 138 tcttcgccgatgtacccgcttggatgagcgccaacggggttgaagtacctgagcagtatg 197
||||| || ||||| || || ||||| || ||||| ||||||||||| || |||| ||||
Sbjct: 12432717 tcttcaccaatgtaaccactaggatgtgcaccaacagggttgaagtatctaagcaatatg 12432658
Query: 198 atcttcca 205
||||||||
Sbjct: 12432657 atcttcca 12432650
>emb|BX663925.1| Arabidopsis thaliana transposon insertion STS GT_5.51331, sequence
tagged site
Length = 101
Score = 46.1 bits (23), Expect = 0.003
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 167 gccaacggggttgaagtacctgagcagtatgatcttcca 205
|||||| ||||||||||| || |||| ||||||||||||
Sbjct: 24 gccaacagggttgaagtatctaagcaatatgatcttcca 62
>gb|BZ660593.1|BZ660593 SALK_024044.33.30.x Arabidopsis thaliana TDNA insertion lines
Arabidopsis thaliana genomic clone SALK_024044.33.30.x,
DNA sequence
Length = 365
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 168 ccaacggggttgaagtacctgagcagtatgatcttcca 205
||||| ||||||||||| || |||| ||||||||||||
Sbjct: 278 ccaacagggttgaagtatctaagcaatatgatcttcca 315
>gb|AY140073.1| Arabidopsis thaliana UDP-galactose 4-epimerase-like protein
(At4g10960) mRNA, complete cds
Length = 2800
Score = 40.1 bits (20), Expect = 0.21
Identities = 161/208 (77%)
Strand = Plus / Minus
Query: 61 agaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
|||| ||||| |||||| ||| |||||||| ||||| || || ||||||| || ||||
Sbjct: 749 agacagtgagatgaggtctcctaccaacagccacttgttgtacaaagggcatgagattgt 690
Query: 121 tcgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttga 180
| || | ||| | |||||||| || |||| || || ||||| || ||||| || ||||
Sbjct: 689 ttggaataccacgagggtcttcaccaatgtcaccactaggatgtgcaccaacaggattga 630
Query: 181 agtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgt 240
| ||||| |||| ||| |||||||| || ||||| || | || || ||||||||||| |
Sbjct: 629 aatacctaagcaatataatcttccattccgggtcagaaccgtatacatcgcggcagattt 570
Query: 241 cttcaatcacaagctttgtccgcccata 268
| ||||| | |||||||| || |||||
Sbjct: 569 cctcaatgaatagctttgttcgtccata 542
>gb|AY065354.1| Arabidopsis thaliana putative UDP-galactose 4-epimerase (At4g10960)
mRNA, complete cds
Length = 1356
Score = 40.1 bits (20), Expect = 0.21
Identities = 161/208 (77%)
Strand = Plus / Minus
Query: 61 agaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
|||| ||||| |||||| ||| |||||||| ||||| || || ||||||| || ||||
Sbjct: 749 agacagtgagatgaggtctcctaccaacagccacttgttgtacaaagggcatgagattgt 690
Query: 121 tcgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttga 180
| || | ||| | |||||||| || |||| || || ||||| || ||||| || ||||
Sbjct: 689 ttggaataccacgagggtcttcaccaatgtcaccactaggatgtgcaccaacaggattga 630
Query: 181 agtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgt 240
| ||||| |||| ||| |||||||| || ||||| || | || || ||||||||||| |
Sbjct: 629 aatacctaagcaatataatcttccattccgggtcagaaccgtatacatcgcggcagattt 570
Query: 241 cttcaatcacaagctttgtccgcccata 268
| ||||| | |||||||| || |||||
Sbjct: 569 cctcaatgaatagctttgttcgtccata 542
>gb|AY117180.1| Arabidopsis thaliana putative UDP-galactose 4-epimerase (At4g10960)
mRNA, complete cds
Length = 1087
Score = 40.1 bits (20), Expect = 0.21
Identities = 161/208 (77%)
Strand = Plus / Minus
Query: 61 agaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
|||| ||||| |||||| ||| |||||||| ||||| || || ||||||| || ||||
Sbjct: 667 agacagtgagatgaggtctcctaccaacagccacttgttgtacaaagggcatgagattgt 608
Query: 121 tcgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttga 180
| || | ||| | |||||||| || |||| || || ||||| || ||||| || ||||
Sbjct: 607 ttggaataccacgagggtcttcaccaatgtcaccactaggatgtgcaccaacaggattga 548
Query: 181 agtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgt 240
| ||||| |||| ||| |||||||| || ||||| || | || || ||||||||||| |
Sbjct: 547 aatacctaagcaatataatcttccattccgggtcagaaccgtatacatcgcggcagattt 488
Query: 241 cttcaatcacaagctttgtccgcccata 268
| ||||| | |||||||| || |||||
Sbjct: 487 cctcaatgaatagctttgttcgtccata 460
>gb|AY085528.1| Arabidopsis thaliana clone 15608 mRNA, complete sequence
Length = 1286
Score = 40.1 bits (20), Expect = 0.21
Identities = 161/208 (77%)
Strand = Plus / Minus
Query: 61 agaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
|||| ||||| |||||| ||| |||||||||||||| || || | ||||| || ||||
Sbjct: 745 agacagtgagatgaggtctcctaccaacagcgacttgttgtacaaaaggcatgagattgt 686
Query: 121 tcgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttga 180
| || | ||| | |||||||| || |||| || || ||||| || ||||| || ||||
Sbjct: 685 ttggaataccacgagggtcttcaccaatgtcaccactaggatgtgcaccaacaggattga 626
Query: 181 agtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgt 240
| ||||| |||| ||| |||||||| || ||||| || | || || ||||||||||| |
Sbjct: 625 aatacctaagcaatataatcttccattccgggtcagaaccgtatacatcgcggcagattt 566
Query: 241 cttcaatcacaagctttgtccgcccata 268
| ||||| | |||||||| || |||||
Sbjct: 565 cctcaatgaatagctttgttcgtccata 538
>emb|BX827643.1|CNS0A2DZ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS8ZA03 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1272
Score = 40.1 bits (20), Expect = 0.21
Identities = 161/208 (77%)
Strand = Plus / Minus
Query: 61 agaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
|||| ||||| |||||| ||| |||||||| ||||| || || ||||||| || ||||
Sbjct: 715 agacagtgagatgaggtctcctaccaacagccacttgttgtacaaagggcatgagattgt 656
Query: 121 tcgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttga 180
| || | ||| | |||||||| || |||| || || ||||| || ||||| || ||||
Sbjct: 655 ttggaataccacgagggtcttcaccaatgtcaccactaggatgtgcaccaacaggattga 596
Query: 181 agtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgt 240
| ||||| |||| ||| |||||||| || ||||| || | || || ||||||||||| |
Sbjct: 595 aatacctaagcaatataatcttccattccgggtcagaaccgtatacatcgcggcagattt 536
Query: 241 cttcaatcacaagctttgtccgcccata 268
| ||||| | |||||||| || |||||
Sbjct: 535 cctcaatgaatagctttgttcgtccata 508
>emb|BX827147.1|CNS0A3P3 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS16ZC07 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1253
Score = 40.1 bits (20), Expect = 0.21
Identities = 161/208 (77%)
Strand = Plus / Minus
Query: 61 agaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
|||| ||||| |||||| ||| |||||||| ||||| || || ||||||| || ||||
Sbjct: 732 agacagtgagatgaggtctcctaccaacagccacttgttgtacaaagggcatgagattgt 673
Query: 121 tcgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttga 180
| || | ||| | |||||||| || |||| || || ||||| || ||||| || ||||
Sbjct: 672 ttggaataccacgagggtcttcaccaatgtcaccactaggatgtgcaccaacaggattga 613
Query: 181 agtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgt 240
| ||||| |||| ||| |||||||| || ||||| || | || || ||||||||||| |
Sbjct: 612 aatacctaagcaatataatcttccattccgggtcagaaccgtatacatcgcggcagattt 553
Query: 241 cttcaatcacaagctttgtccgcccata 268
| ||||| | |||||||| || |||||
Sbjct: 552 cctcaatgaatagctttgttcgtccata 525
>emb|BX827895.1|CNS0A3UR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH32ZD08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1339
Score = 40.1 bits (20), Expect = 0.21
Identities = 161/208 (77%)
Strand = Plus / Minus
Query: 61 agaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
|||| ||||| |||||| ||| |||||||| ||||| || || ||||||| || ||||
Sbjct: 790 agacagtgagatgaggtctcctaccaacagccacttgttgtacaaagggcatgagattgt 731
Query: 121 tcgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttga 180
| || | ||| | |||||||| || |||| || || ||||| || ||||| || ||||
Sbjct: 730 ttggaataccacgagggtcttcaccaatgtcaccactaggatgtgcaccaacaggattga 671
Query: 181 agtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgt 240
| ||||| |||| ||| |||||||| || ||||| || | || || ||||||||||| |
Sbjct: 670 aatacctaagcaatataatcttccattccgggtcagaaccgtatacatcgcggcagattt 611
Query: 241 cttcaatcacaagctttgtccgcccata 268
| ||||| | |||||||| || |||||
Sbjct: 610 cctcaatgaatagctttgttcgtccata 583
>emb|BX826665.1|CNS0A44W Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTFB52ZC08 of Flowers and buds of strain col-0 of
Arabidopsis thaliana (thale cress)
Length = 1305
Score = 40.1 bits (20), Expect = 0.21
Identities = 161/208 (77%)
Strand = Plus / Minus
Query: 61 agaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
|||| ||||| |||||| ||| |||||||| ||||| || || ||||||| || ||||
Sbjct: 729 agacagtgagatgaggtctcctaccaacagccacttgttgtacaaagggcatgagattgt 670
Query: 121 tcgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttga 180
| || | ||| | |||||||| || |||| || || ||||| || ||||| || ||||
Sbjct: 669 ttggaataccacgagggtcttcaccaatgtcaccactaggatgtgcaccaacaggattga 610
Query: 181 agtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgt 240
| ||||| |||| ||| |||||||| || ||||| || | || || ||||||||||| |
Sbjct: 609 aatacctaagcaatataatcttccattccgggtcagaaccgtatacatcgcggcagattt 550
Query: 241 cttcaatcacaagctttgtccgcccata 268
| ||||| | |||||||| || |||||
Sbjct: 549 cctcaatgaatagctttgttcgtccata 522
>ref|NM_117165.2| Arabidopsis thaliana triacylglycerol lipase AT4G10955 mRNA,
complete cds
Length = 2749
Score = 40.1 bits (20), Expect = 0.21
Identities = 161/208 (77%)
Strand = Plus / Minus
Query: 61 agaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
|||| ||||| |||||| ||| |||||||| ||||| || || ||||||| || ||||
Sbjct: 750 agacagtgagatgaggtctcctaccaacagccacttgttgtacaaagggcatgagattgt 691
Query: 121 tcgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttga 180
| || | ||| | |||||||| || |||| || || ||||| || ||||| || ||||
Sbjct: 690 ttggaataccacgagggtcttcaccaatgtcaccactaggatgtgcaccaacaggattga 631
Query: 181 agtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgt 240
| ||||| |||| ||| |||||||| || ||||| || | || || ||||||||||| |
Sbjct: 630 aatacctaagcaatataatcttccattccgggtcagaaccgtatacatcgcggcagattt 571
Query: 241 cttcaatcacaagctttgtccgcccata 268
| ||||| | |||||||| || |||||
Sbjct: 570 cctcaatgaatagctttgttcgtccata 543
>ref|NM_117166.2| Arabidopsis thaliana NAD binding / UDP-glucose 4-epimerase/
catalytic AT4G10960 mRNA, complete cds
Length = 2827
Score = 40.1 bits (20), Expect = 0.21
Identities = 161/208 (77%)
Strand = Plus / Minus
Query: 61 agaccgtgaggtgaggtaacctcccaacagcgacttgctgcacgtagggcatcaggttgt 120
|||| ||||| |||||| ||| |||||||| ||||| || || ||||||| || ||||
Sbjct: 745 agacagtgagatgaggtctcctaccaacagccacttgttgtacaaagggcatgagattgt 686
Query: 121 tcgggacaccgcaggggtcttcgccgatgtacccgcttggatgagcgccaacggggttga 180
| || | ||| | |||||||| || |||| || || ||||| || ||||| || ||||
Sbjct: 685 ttggaataccacgagggtcttcaccaatgtcaccactaggatgtgcaccaacaggattga 626
Query: 181 agtacctgagcagtatgatcttccagtcggggtcggagcggtggacgtcgcggcagatgt 240
| ||||| |||| ||| |||||||| || ||||| || | || || ||||||||||| |
Sbjct: 625 aatacctaagcaatataatcttccattccgggtcagaaccgtatacatcgcggcagattt 566
Query: 241 cttcaatcacaagctttgtccgcccata 268
| ||||| | |||||||| || |||||
Sbjct: 565 cctcaatgaatagctttgttcgtccata 538
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,586
Number of Sequences: 1013581
Number of extensions: 66586
Number of successful extensions: 4265
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 19
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4202
Number of HSP's gapped (non-prelim): 63
length of query: 308
length of database: 908,940,872
effective HSP length: 19
effective length of query: 289
effective length of database: 889,682,833
effective search space: 257118338737
effective search space used: 257118338737
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)