BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580138.2.1
(1484 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis tha... 78 5e-012
gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BA... 78 5e-012
emb|AJ551326.1|ATH551326 Arabidopsis thaliana partial mRNA ... 78 5e-012
gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom ar... 78 5e-012
ref|NM_106283.1| Arabidopsis thaliana unknown protein AT1G7... 78 5e-012
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 78 5e-012
gb|B28830.1|B28830 T20I20TR TAMU Arabidopsis thaliana genom... 64 7e-008
gb|B62223.1|B62223 T20N22TR TAMU Arabidopsis thaliana genom... 64 7e-008
>gb|AC009978.3|AC009978 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I,
complete sequence
Length = 97554
Score = 77.8 bits (39), Expect = 5e-012
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 1150 ggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgctgataaacaatac 1209
||||| |||||||||||||||||||||||||| ||||| || || ||||| | ||| ||
Sbjct: 92303 ggaaacttcatgattgcccatttgttgatgattgagagaagagaagctgagagacagtaa 92362
Query: 1210 ccagcagccacaccataga 1228
|||||||| ||||||||||
Sbjct: 92363 ccagcagctacaccataga 92381
Score = 63.9 bits (32), Expect = 7e-008
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 675 agcctcaaggttgttgtatagcacaaggccccatgtgttcagcccaatggtcattacaac 734
|||||||||||| ||||| || ||||| ||||| ||||||| ||||| ||||| || ||
Sbjct: 91828 agcctcaaggttattgtagagaacaagtccccaagtgttcaagccaatcgtcataaccac 91887
Query: 735 atgcttgatgta 746
||||||||||||
Sbjct: 91888 atgcttgatgta 91899
Score = 44.1 bits (22), Expect = 0.069
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 934 acagcagagcggaacacaatgaaagtatccacat 967
||||||||||| ||||| ||||||||||| ||||
Sbjct: 92087 acagcagagcgaaacacgatgaaagtatcgacat 92120
>gb|AC012394.3|AC012394 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete
sequence
Length = 94487
Score = 77.8 bits (39), Expect = 5e-012
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1150 ggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgctgataaacaatac 1209
||||| |||||||||||||||||||||||||| ||||| || || ||||| | ||| ||
Sbjct: 69336 ggaaacttcatgattgcccatttgttgatgattgagagaagagaagctgagagacagtaa 69277
Query: 1210 ccagcagccacaccataga 1228
|||||||| ||||||||||
Sbjct: 69276 ccagcagctacaccataga 69258
Score = 63.9 bits (32), Expect = 7e-008
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 675 agcctcaaggttgttgtatagcacaaggccccatgtgttcagcccaatggtcattacaac 734
|||||||||||| ||||| || ||||| ||||| ||||||| ||||| ||||| || ||
Sbjct: 69811 agcctcaaggttattgtagagaacaagtccccaagtgttcaagccaatcgtcataaccac 69752
Query: 735 atgcttgatgta 746
||||||||||||
Sbjct: 69751 atgcttgatgta 69740
Score = 44.1 bits (22), Expect = 0.069
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 934 acagcagagcggaacacaatgaaagtatccacat 967
||||||||||| ||||| ||||||||||| ||||
Sbjct: 69552 acagcagagcgaaacacgatgaaagtatcgacat 69519
>emb|AJ551326.1|ATH551326 Arabidopsis thaliana partial mRNA for GONST3 Golgi Nucleotide sugar
transporter (At1g76340 gene)
Length = 1119
Score = 77.8 bits (39), Expect = 5e-012
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1150 ggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgctgataaacaatac 1209
||||| |||||||||||||||||||||||||| ||||| || || ||||| | ||| ||
Sbjct: 182 ggaaacttcatgattgcccatttgttgatgattgagagaagagaagctgagagacagtaa 123
Query: 1210 ccagcagccacaccataga 1228
|||||||| ||||||||||
Sbjct: 122 ccagcagctacaccataga 104
Score = 63.9 bits (32), Expect = 7e-008
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 675 agcctcaaggttgttgtatagcacaaggccccatgtgttcagcccaatggtcattacaac 734
|||||||||||| ||||| || ||||| ||||| ||||||| ||||| ||||| || ||
Sbjct: 657 agcctcaaggttattgtagagaacaagtccccaagtgttcaagccaatcgtcataaccac 598
Query: 735 atgcttgatgta 746
||||||||||||
Sbjct: 597 atgcttgatgta 586
Score = 44.1 bits (22), Expect = 0.069
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 934 acagcagagcggaacacaatgaaagtatccacat 967
||||||||||| ||||| ||||||||||| ||||
Sbjct: 398 acagcagagcgaaacacgatgaaagtatcgacat 365
>gb|AE005173.1| Arabidopsis thaliana chromosome 1, bottom arm complete sequence
Length = 14668883
Score = 77.8 bits (39), Expect = 5e-012
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 1150 ggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgctgataaacaatac 1209
||||| |||||||||||||||||||||||||| ||||| || || ||||| | ||| ||
Sbjct: 12877339 ggaaacttcatgattgcccatttgttgatgattgagagaagagaagctgagagacagtaa 12877398
Query: 1210 ccagcagccacaccataga 1228
|||||||| ||||||||||
Sbjct: 12877399 ccagcagctacaccataga 12877417
Score = 63.9 bits (32), Expect = 7e-008
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 675 agcctcaaggttgttgtatagcacaaggccccatgtgttcagcccaatggtcattacaac 734
|||||||||||| ||||| || ||||| ||||| ||||||| ||||| ||||| || ||
Sbjct: 12876864 agcctcaaggttattgtagagaacaagtccccaagtgttcaagccaatcgtcataaccac 12876923
Query: 735 atgcttgatgta 746
||||||||||||
Sbjct: 12876924 atgcttgatgta 12876935
Score = 44.1 bits (22), Expect = 0.069
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 934 acagcagagcggaacacaatgaaagtatccacat 967
||||||||||| ||||| ||||||||||| ||||
Sbjct: 12877123 acagcagagcgaaacacgatgaaagtatcgacat 12877156
>ref|NM_106283.1| Arabidopsis thaliana unknown protein AT1G76340 mRNA, complete cds
Length = 1352
Score = 77.8 bits (39), Expect = 5e-012
Identities = 69/79 (87%)
Strand = Plus / Minus
Query: 1150 ggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgctgataaacaatac 1209
||||| |||||||||||||||||||||||||| ||||| || || ||||| | ||| ||
Sbjct: 182 ggaaacttcatgattgcccatttgttgatgattgagagaagagaagctgagagacagtaa 123
Query: 1210 ccagcagccacaccataga 1228
|||||||| ||||||||||
Sbjct: 122 ccagcagctacaccataga 104
Score = 63.9 bits (32), Expect = 7e-008
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 675 agcctcaaggttgttgtatagcacaaggccccatgtgttcagcccaatggtcattacaac 734
|||||||||||| ||||| || ||||| ||||| ||||||| ||||| ||||| || ||
Sbjct: 657 agcctcaaggttattgtagagaacaagtccccaagtgttcaagccaatcgtcataaccac 598
Query: 735 atgcttgatgta 746
||||||||||||
Sbjct: 597 atgcttgatgta 586
Score = 44.1 bits (22), Expect = 0.069
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 934 acagcagagcggaacacaatgaaagtatccacat 967
||||||||||| ||||| ||||||||||| ||||
Sbjct: 398 acagcagagcgaaacacgatgaaagtatcgacat 365
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 77.8 bits (39), Expect = 5e-012
Identities = 69/79 (87%)
Strand = Plus / Plus
Query: 1150 ggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgctgataaacaatac 1209
||||| |||||||||||||||||||||||||| ||||| || || ||||| | ||| ||
Sbjct: 28641019 ggaaacttcatgattgcccatttgttgatgattgagagaagagaagctgagagacagtaa 28641078
Query: 1210 ccagcagccacaccataga 1228
|||||||| ||||||||||
Sbjct: 28641079 ccagcagctacaccataga 28641097
Score = 63.9 bits (32), Expect = 7e-008
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 675 agcctcaaggttgttgtatagcacaaggccccatgtgttcagcccaatggtcattacaac 734
|||||||||||| ||||| || ||||| ||||| ||||||| ||||| ||||| || ||
Sbjct: 28640544 agcctcaaggttattgtagagaacaagtccccaagtgttcaagccaatcgtcataaccac 28640603
Query: 735 atgcttgatgta 746
||||||||||||
Sbjct: 28640604 atgcttgatgta 28640615
Score = 44.1 bits (22), Expect = 0.069
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 934 acagcagagcggaacacaatgaaagtatccacat 967
||||||||||| ||||| ||||||||||| ||||
Sbjct: 28640803 acagcagagcgaaacacgatgaaagtatcgacat 28640836
>gb|B28830.1|B28830 T20I20TR TAMU Arabidopsis thaliana genomic clone T20I20, DNA sequence
Length = 494
Score = 63.9 bits (32), Expect = 7e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 1150 ggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgctgataaacaatac 1209
||||| |||||||||||||||||||||||||| ||||| || || ||||| | ||| ||
Sbjct: 70 ggaaacttcatgattgcccatttgttgatgattgagagaagagaagctgagagacagtaa 11
Query: 1210 ccagcagc 1217
||||||||
Sbjct: 10 ccagcagc 3
>gb|B62223.1|B62223 T20N22TR TAMU Arabidopsis thaliana genomic clone T20N22, DNA sequence
Length = 366
Score = 63.9 bits (32), Expect = 7e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 1150 ggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgctgataaacaatac 1209
||||| |||||||||||||||||||||||||| ||||| || || ||||| | ||| ||
Sbjct: 70 ggaaacttcatgattgcccatttgttgatgattgagagaagagaagctgagagacagtaa 11
Query: 1210 ccagcagc 1217
||||||||
Sbjct: 10 ccagcagc 3
Score = 44.1 bits (22), Expect = 0.069
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 934 acagcagagcggaacacaatgaaagtatccacat 967
||||||||||| ||||| ||||||||||| ||||
Sbjct: 286 acagcagagcgaaacacgatgaaagtatcgacat 253
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 684,699
Number of Sequences: 1013581
Number of extensions: 684699
Number of successful extensions: 51521
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50941
Number of HSP's gapped (non-prelim): 580
length of query: 1484
length of database: 908,940,872
effective HSP length: 21
effective length of query: 1463
effective length of database: 887,655,671
effective search space: 1298640246673
effective search space used: 1298640246673
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)