BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3191495.2.1
(1277 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AF447889.1| Arabidopsis thaliana LOB DOMAIN 15 (LBD15) m... 46 0.015
gb|AY088856.1| Arabidopsis thaliana clone 97343 mRNA, compl... 46 0.015
gb|AC002336.3| Arabidopsis thaliana chromosome 2 clone T2P4... 46 0.015
ref|NM_129608.2| Arabidopsis thaliana unknown protein AT2G4... 46 0.015
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 46 0.015
gb|B20761.1|B20761 T12J14-T7 TAMU Arabidopsis thaliana geno... 44 0.059
gb|AQ965111.1|AQ965111 LERIA43TF LERG Arabidopsis thaliana ... 42 0.23
gb|AQ965112.1|AQ965112 LERIA43TR LERG Arabidopsis thaliana ... 42 0.23
dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, com... 42 0.23
emb|AL163491.1|ATT31B5 Arabidopsis thaliana DNA chromosome ... 42 0.23
emb|AL163572.1|ATT22N19 Arabidopsis thaliana DNA chromosome... 42 0.23
ref|NM_121338.1| Arabidopsis thaliana unknown protein AT5G1... 42 0.23
ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complet... 42 0.23
>gb|AF447889.1| Arabidopsis thaliana LOB DOMAIN 15 (LBD15) mRNA, complete cds
Length = 907
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 tcatcctccttctccatcttctt 1029
|||||||||||||||||||||||
Sbjct: 685 tcatcctccttctccatcttctt 707
>gb|AY088856.1| Arabidopsis thaliana clone 97343 mRNA, complete sequence
Length = 795
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 tcatcctccttctccatcttctt 1029
|||||||||||||||||||||||
Sbjct: 648 tcatcctccttctccatcttctt 670
>gb|AC002336.3| Arabidopsis thaliana chromosome 2 clone T2P4 map CIC10A06, complete
sequence
Length = 84675
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 tcatcctccttctccatcttctt 1029
|||||||||||||||||||||||
Sbjct: 60734 tcatcctccttctccatcttctt 60756
>ref|NM_129608.2| Arabidopsis thaliana unknown protein AT2G40470 mRNA, complete cds
Length = 907
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1007 tcatcctccttctccatcttctt 1029
|||||||||||||||||||||||
Sbjct: 685 tcatcctccttctccatcttctt 707
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 46.1 bits (23), Expect = 0.015
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1007 tcatcctccttctccatcttctt 1029
|||||||||||||||||||||||
Sbjct: 16909604 tcatcctccttctccatcttctt 16909582
>gb|B20761.1|B20761 T12J14-T7 TAMU Arabidopsis thaliana genomic clone T12J14, DNA
sequence
Length = 752
Score = 44.1 bits (22), Expect = 0.059
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1012 ctccttctccatcttcttcatctcca 1037
|||||||||||||| |||||||||||
Sbjct: 638 ctccttctccatctacttcatctcca 663
>gb|AQ965111.1|AQ965111 LERIA43TF LERG Arabidopsis thaliana genomic clone LERIA43, DNA
sequence
Length = 527
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 47 gagaaccatgtggtcgtcgat 67
|||||||||||||||||||||
Sbjct: 360 gagaaccatgtggtcgtcgat 340
>gb|AQ965112.1|AQ965112 LERIA43TR LERG Arabidopsis thaliana genomic clone LERIA43, DNA
sequence
Length = 512
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 gagaaccatgtggtcgtcgat 67
|||||||||||||||||||||
Sbjct: 163 gagaaccatgtggtcgtcgat 183
>dbj|BA000015.5| Arabidopsis thaliana DNA, chromosome 5, complete sequence
Length = 23810767
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 gagaaccatgtggtcgtcgat 67
|||||||||||||||||||||
Sbjct: 4094499 gagaaccatgtggtcgtcgat 4094519
>emb|AL163491.1|ATT31B5 Arabidopsis thaliana DNA chromosome 5, BAC clone T31B5 (ESSA project)
Length = 82612
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 gagaaccatgtggtcgtcgat 67
|||||||||||||||||||||
Sbjct: 78324 gagaaccatgtggtcgtcgat 78344
>emb|AL163572.1|ATT22N19 Arabidopsis thaliana DNA chromosome 5, BAC clone T22N19 (ESSA project)
Length = 68948
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 gagaaccatgtggtcgtcgat 67
|||||||||||||||||||||
Sbjct: 24687 gagaaccatgtggtcgtcgat 24707
>ref|NM_121338.1| Arabidopsis thaliana unknown protein AT5G13350 mRNA, complete cds
Length = 1764
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 gagaaccatgtggtcgtcgat 67
|||||||||||||||||||||
Sbjct: 1123 gagaaccatgtggtcgtcgat 1143
>ref|NC_003076.4| Arabidopsis thaliana chromosome 5, complete sequence
Length = 26992728
Score = 42.1 bits (21), Expect = 0.23
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 gagaaccatgtggtcgtcgat 67
|||||||||||||||||||||
Sbjct: 4281526 gagaaccatgtggtcgtcgat 4281546
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 595,135
Number of Sequences: 1013581
Number of extensions: 595135
Number of successful extensions: 51745
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50928
Number of HSP's gapped (non-prelim): 817
length of query: 1277
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1257
effective length of database: 888,669,252
effective search space: 1117057249764
effective search space used: 1117057249764
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)