BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3023309.2.1
(1096 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|T04343.1|T04343 390 Lambda-PRL2 Arabidopsis thaliana cDN... 48 0.003
gb|AI996034.1|AI996034 701549730 A. thaliana, Columbia Col-... 48 0.003
gb|AW004535.1|AW004535 701932082 A. thaliana, mixed source ... 48 0.003
gb|AV795552.1|AV795552 AV795552 RAFL8 Arabidopsis thaliana ... 48 0.003
gb|AV826569.1|AV826569 AV826569 RAFL8 Arabidopsis thaliana ... 48 0.003
gb|AV551215.1|AV551215 AV551215 Arabidopsis thaliana roots ... 48 0.003
gb|BP630450.1|BP630450 BP630450 RAFL17 Arabidopsis thaliana... 48 0.003
gb|BP797968.1|BP797968 BP797968 RAFL14 Arabidopsis thaliana... 48 0.003
gb|AY052663.1| Arabidopsis thaliana At2g47580/T30B22.12 mRN... 48 0.003
gb|AY059875.1| Arabidopsis thaliana small nuclear ribonucle... 48 0.003
emb|AX286683.1| Sequence 5 from Patent WO0181599 48 0.003
gb|AY093341.1| Arabidopsis thaliana small nuclear ribonucle... 48 0.003
gb|AY142070.1| Arabidopsis thaliana At2g47580/T30B22.12 mRN... 48 0.003
emb|AX505378.1| Sequence 73 from Patent WO0216655 48 0.003
gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B... 48 0.003
emb|Z49991.1|ATU1A A.thaliana mRNA for U1snRNP-specific pro... 48 0.003
ref|NM_130326.2| Arabidopsis thaliana U1A (SPLICEOSOMAL PRO... 48 0.003
ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complet... 48 0.003
gb|CW845168.1|CW845168 GT11787.Ds3.09.15.2002.jw60.455 Arab... 42 0.20
gb|AV824661.1|AV824661 AV824661 RAFL6 Arabidopsis thaliana ... 42 0.20
>gb|T04343.1|T04343 390 Lambda-PRL2 Arabidopsis thaliana cDNA clone 38C6T7, mRNA
sequence
Length = 394
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||
Sbjct: 286 atgagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacattt 345
Query: 404 gtacctcg 411
|| |||||
Sbjct: 346 gttcctcg 353
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 182 aagacctttaagcacaaaggacaagcttgggtagtcttcga 222
>gb|AI996034.1|AI996034 701549730 A. thaliana, Columbia Col-0, inflorescence-2 Arabidopsis
thaliana cDNA clone 701549730, mRNA sequence
Length = 597
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 373 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 314
Query: 671 tacc 674
||||
Sbjct: 313 tacc 310
>gb|AW004535.1|AW004535 701932082 A. thaliana, mixed source Arabidopsis thaliana cDNA clone
701932082, mRNA sequence
Length = 254
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 154 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 95
Query: 671 tacc 674
||||
Sbjct: 94 tacc 91
>gb|AV795552.1|AV795552 AV795552 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-18-C01 3',
mRNA sequence
Length = 438
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 365 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 306
Query: 671 tacc 674
||||
Sbjct: 305 tacc 302
>gb|AV826569.1|AV826569 AV826569 RAFL8 Arabidopsis thaliana cDNA clone RAFL08-18-C01 5',
mRNA sequence
Length = 624
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||
Sbjct: 311 atgagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacattt 370
Query: 404 gtacctcg 411
|| |||||
Sbjct: 371 gttcctcg 378
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 206 aagacctttaagcacaaaggacaagcttgggtagtcttcga 246
>gb|AV551215.1|AV551215 AV551215 Arabidopsis thaliana roots Columbia Arabidopsis thaliana
cDNA clone RZ122g07R 5', mRNA sequence
Length = 561
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||
Sbjct: 272 atgagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacattt 331
Query: 404 gtacctcg 411
|| |||||
Sbjct: 332 gttcctcg 339
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 167 aagacctttaagcacaaaggacaagcttgggtagtcttcga 207
>gb|BP630450.1|BP630450 BP630450 RAFL17 Arabidopsis thaliana cDNA clone RAFL17-20-D06 3',
mRNA sequence
Length = 425
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 308 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 249
Query: 671 tacc 674
||||
Sbjct: 248 tacc 245
>gb|BP797968.1|BP797968 BP797968 RAFL14 Arabidopsis thaliana cDNA clone RAFL23-05-I11 5',
mRNA sequence
Length = 387
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||
Sbjct: 307 atgagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacattt 366
Query: 404 gtacctcg 411
|| |||||
Sbjct: 367 gttcctcg 374
>gb|AY052663.1| Arabidopsis thaliana At2g47580/T30B22.12 mRNA, complete cds
Length = 966
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 576 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 635
Query: 671 tacc 674
||||
Sbjct: 636 tacc 639
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 201 aagacctttaagcacaaaggacaagcttgggtagtcttcga 241
>gb|AY059875.1| Arabidopsis thaliana small nuclear ribonucleoprotein U1A
(At2g47580; T30B22.12) mRNA, complete cds
Length = 944
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 580 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 639
Query: 671 tacc 674
||||
Sbjct: 640 tacc 643
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||
Sbjct: 310 atgagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacattt 369
Query: 404 gtacctcg 411
|| |||||
Sbjct: 370 gttcctcg 377
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 205 aagacctttaagcacaaaggacaagcttgggtagtcttcga 245
>emb|AX286683.1| Sequence 5 from Patent WO0181599
Length = 920
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 567 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 626
Query: 671 tacc 674
||||
Sbjct: 627 tacc 630
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||
Sbjct: 297 atgagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacattt 356
Query: 404 gtacctcg 411
|| |||||
Sbjct: 357 gttcctcg 364
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 192 aagacctttaagcacaaaggacaagcttgggtagtcttcga 232
>gb|AY093341.1| Arabidopsis thaliana small nuclear ribonucleoprotein U1A
(At2g47580) mRNA, complete cds
Length = 842
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 538 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 597
Query: 671 tacc 674
||||
Sbjct: 598 tacc 601
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||
Sbjct: 268 atgagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacattt 327
Query: 404 gtacctcg 411
|| |||||
Sbjct: 328 gttcctcg 335
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 163 aagacctttaagcacaaaggacaagcttgggtagtcttcga 203
>gb|AY142070.1| Arabidopsis thaliana At2g47580/T30B22.12 mRNA, complete cds
Length = 753
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 538 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 597
Query: 671 tacc 674
||||
Sbjct: 598 tacc 601
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 163 aagacctttaagcacaaaggacaagcttgggtagtcttcga 203
>emb|AX505378.1| Sequence 73 from Patent WO0216655
Length = 753
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 538 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 597
Query: 671 tacc 674
||||
Sbjct: 598 tacc 601
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||
Sbjct: 268 atgagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacattt 327
Query: 404 gtacctcg 411
|| |||||
Sbjct: 328 gttcctcg 335
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 163 aagacctttaagcacaaaggacaagcttgggtagtcttcga 203
>gb|AC002535.3| Arabidopsis thaliana chromosome 2 clone T30B22 map CIC06C03, complete
sequence
Length = 98937
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 30169 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 30110
Query: 671 tacc 674
||||
Sbjct: 30109 tacc 30106
Score = 44.1 bits (22), Expect = 0.051
Identities = 55/66 (83%)
Strand = Plus / Minus
Query: 346 gagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgt 405
|||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||||
Sbjct: 30747 gagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacatttgt 30688
Query: 406 acctcg 411
|||||
Sbjct: 30687 tcctcg 30682
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 31131 aagacctttaagcacaaaggacaagcttgggtagtcttcga 31091
>emb|Z49991.1|ATU1A A.thaliana mRNA for U1snRNP-specific protein (U1A)
Length = 920
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 567 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 626
Query: 671 tacc 674
||||
Sbjct: 627 tacc 630
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||
Sbjct: 297 atgagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacattt 356
Query: 404 gtacctcg 411
|| |||||
Sbjct: 357 gttcctcg 364
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 192 aagacctttaagcacaaaggacaagcttgggtagtcttcga 232
>ref|NM_130326.2| Arabidopsis thaliana U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding /
nucleic acid binding AT2G47580 (U1A) mRNA, complete cds
Length = 980
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 580 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 639
Query: 671 tacc 674
||||
Sbjct: 640 tacc 643
Score = 48.1 bits (24), Expect = 0.003
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 344 atgagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcaccttt 403
|||||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||
Sbjct: 310 atgagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacattt 369
Query: 404 gtacctcg 411
|| |||||
Sbjct: 370 gttcctcg 377
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 205 aagacctttaagcacaaaggacaagcttgggtagtcttcga 245
>ref|NC_003071.3| Arabidopsis thaliana chromosome 2, complete sequence
Length = 19705359
Score = 48.1 bits (24), Expect = 0.003
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 611 tttgtccaaaacttgccacacgagacgacgcccatgatgctccagatgctcttctgccag 670
|||||||||||| | || |||||||| || || ||| |||| |||||| | |||||||||
Sbjct: 19525541 tttgtccaaaaccttcctcacgagacaactccaatggtgcttcagatgttgttctgccag 19525600
Query: 671 tacc 674
||||
Sbjct: 19525601 tacc 19525604
Score = 44.1 bits (22), Expect = 0.051
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 346 gagaattcaatatgccaagaccaaatcagatattatagcaaaggctgatggcacctttgt 405
|||||| ||||||||||| || ||||||||| || | || ||||| ||||| || |||||
Sbjct: 19524963 gagaatacaatatgccaaaacaaaatcagatgttgttgccaaggccgatggtacatttgt 19525022
Query: 406 acctcg 411
|||||
Sbjct: 19525023 tcctcg 19525028
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 19524579 aagacctttaagcacaaaggacaagcttgggtagtcttcga 19524619
>gb|CW845168.1|CW845168 GT11787.Ds3.09.15.2002.jw60.455 Arabidopsis thaliana Landsberg Ds
insertion lines Arabidopsis thaliana genomic clone
GT11787, DNA sequence
Length = 455
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 403 aagacctttaagcacaaaggacaagcttgggtagtcttcga 363
>gb|AV824661.1|AV824661 AV824661 RAFL6 Arabidopsis thaliana cDNA clone RAFL06-74-G20 5',
mRNA sequence
Length = 634
Score = 42.1 bits (21), Expect = 0.20
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 239 aagactttgaagcataaaggtcaagcttgggttgtcttcga 279
||||| || ||||| ||||| ||||||||||| ||||||||
Sbjct: 202 aagacctttaagcacaaaggacaagcttgggtagtcttcga 242
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 601,097
Number of Sequences: 1013581
Number of extensions: 601097
Number of successful extensions: 47578
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47260
Number of HSP's gapped (non-prelim): 318
length of query: 1096
length of database: 908,940,872
effective HSP length: 20
effective length of query: 1076
effective length of database: 888,669,252
effective search space: 956208115152
effective search space used: 956208115152
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)