BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2950160.2.1
(846 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CL490667.1|CL490667 SAIL_543_H02.v1 SAIL Collection Arab... 44 0.039
emb|BX945155.1| Arabidopsis thaliana T-DNA flanking sequenc... 44 0.039
gb|AC012393.5|ATAC012393 Arabidopsis thaliana chromosome II... 44 0.039
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 44 0.039
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 44 0.039
>gb|CL490667.1|CL490667 SAIL_543_H02.v1 SAIL Collection Arabidopsis thaliana genomic clone
SAIL_543_H02.v1, DNA sequence
Length = 902
Score = 44.1 bits (22), Expect = 0.039
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 ataaataaacaaacagaaaagg 57
||||||||||||||||||||||
Sbjct: 170 ataaataaacaaacagaaaagg 191
>emb|BX945155.1| Arabidopsis thaliana T-DNA flanking sequence GK-706A06-025108,
genomic survey sequence
Length = 422
Score = 44.1 bits (22), Expect = 0.039
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 36 ataaataaacaaacagaaaagg 57
||||||||||||||||||||||
Sbjct: 257 ataaataaacaaacagaaaagg 236
>gb|AC012393.5|ATAC012393 Arabidopsis thaliana chromosome III BAC F10A16 genomic sequence,
complete sequence
Length = 87045
Score = 44.1 bits (22), Expect = 0.039
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 ataaataaacaaacagaaaagg 57
||||||||||||||||||||||
Sbjct: 30952 ataaataaacaaacagaaaagg 30973
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 44.1 bits (22), Expect = 0.039
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 ataaataaacaaacagaaaagg 57
||||||||||||||||||||||
Sbjct: 1722062 ataaataaacaaacagaaaagg 1722083
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 44.1 bits (22), Expect = 0.039
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 36 ataaataaacaaacagaaaagg 57
||||||||||||||||||||||
Sbjct: 1726089 ataaataaacaaacagaaaagg 1726110
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 474,149
Number of Sequences: 1013581
Number of extensions: 474149
Number of successful extensions: 35790
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35329
Number of HSP's gapped (non-prelim): 461
length of query: 846
length of database: 908,940,872
effective HSP length: 20
effective length of query: 826
effective length of database: 888,669,252
effective search space: 734040802152
effective search space used: 734040802152
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)