BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2594211.2.1
(668 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
emb|AJ595013.1| Arabidopsis thaliana T-DNA flanking sequenc... 42 0.12
gb|AI999398.1|AI999398 701555702 A. thaliana, Columbia Col-... 42 0.12
gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm c... 42 0.12
gb|AY052247.1| Arabidopsis thaliana At1g26770/T24P13_14 mRN... 42 0.12
gb|AY060512.1| Arabidopsis thaliana At1g26770/T24P13_14 mRN... 42 0.12
gb|AY085242.1| Arabidopsis thaliana clone 14132 mRNA, compl... 42 0.12
gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis tha... 42 0.12
emb|BX816448.1|CNS0ADWQ Arabidopsis thaliana Full-length cD... 42 0.12
gb|AF229437.1| Arabidopsis thaliana expansin 10 (EXPA10) mR... 42 0.12
gb|AF229431.1| Arabidopsis thaliana expansin 10 (EXPA10) ge... 42 0.12
ref|NM_102440.3| Arabidopsis thaliana ATEXPA10 (ARABIDOPSIS... 42 0.12
ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complet... 42 0.12
>emb|AJ595013.1| Arabidopsis thaliana T-DNA flanking sequence, left border, clone
409G03, genomic survey sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 519 gcggccgtcgctggtggtgac 539
>gb|AI999398.1|AI999398 701555702 A. thaliana, Columbia Col-0, rosette-3 Arabidopsis
thaliana cDNA clone 701555702, mRNA sequence
Length = 587
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 446 gcggccgtcgctggtggtgac 466
>gb|AE005172.1| Arabidopsis thaliana chromosome 1, top arm complete sequence
Length = 14221815
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 9269324 gcggccgtcgctggtggtgac 9269304
>gb|AY052247.1| Arabidopsis thaliana At1g26770/T24P13_14 mRNA, complete cds
Length = 1238
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 764 gcggccgtcgctggtggtgac 744
>gb|AY060512.1| Arabidopsis thaliana At1g26770/T24P13_14 mRNA, complete cds
Length = 750
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 675 gcggccgtcgctggtggtgac 655
>gb|AY085242.1| Arabidopsis thaliana clone 14132 mRNA, complete sequence
Length = 1235
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 770 gcggccgtcgctggtggtgac 750
>gb|AC006535.7|AC006535 Genomic sequence for Arabidopsis thaliana BAC T24P13 from chromosome I,
complete sequence
Length = 98630
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 60475 gcggccgtcgctggtggtgac 60455
>emb|BX816448.1|CNS0ADWQ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH49ZF10 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1341
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 744 gcggccgtcgctggtggtgac 724
>gb|AF229437.1| Arabidopsis thaliana expansin 10 (EXPA10) mRNA, complete cds
Length = 1189
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 718 gcggccgtcgctggtggtgac 698
>gb|AF229431.1| Arabidopsis thaliana expansin 10 (EXPA10) gene, complete cds
Length = 3705
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 2558 gcggccgtcgctggtggtgac 2538
>ref|NM_102440.3| Arabidopsis thaliana ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10)
AT1G26770 (ATEXPA10) mRNA, complete cds
Length = 1366
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 770 gcggccgtcgctggtggtgac 750
>ref|NC_003070.5| Arabidopsis thaliana chromosome 1, complete sequence
Length = 30432563
Score = 42.1 bits (21), Expect = 0.12
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 568 gcggccgtcgctggtggtgac 588
|||||||||||||||||||||
Sbjct: 9260704 gcggccgtcgctggtggtgac 9260684
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 196,645
Number of Sequences: 1013581
Number of extensions: 196645
Number of successful extensions: 13099
Number of sequences better than 0.5: 12
Number of HSP's better than 0.5 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12954
Number of HSP's gapped (non-prelim): 145
length of query: 668
length of database: 908,940,872
effective HSP length: 20
effective length of query: 648
effective length of database: 888,669,252
effective search space: 575857675296
effective search space used: 575857675296
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)