BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2591131.2.1
(596 letters)
Database: At_nucl_with_EST.fasta
1,013,581 sequences; 908,940,872 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK175875.1| Arabidopsis thaliana mRNA for expansin-like... 40 0.42
dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complet... 40 0.42
emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome... 40 0.42
ref|NM_115407.2| Arabidopsis thaliana ATEXPA16 (ARABIDOPSIS... 40 0.42
ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complet... 40 0.42
>dbj|AK175875.1| Arabidopsis thaliana mRNA for expansin-like protein, complete cds,
clone: RAFL22-51-G11
Length = 1115
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 317 actgccagttctggccccagttcc 340
||||||||||||| ||||||||||
Sbjct: 726 actgccagttctgtccccagttcc 703
>dbj|BA000014.8| Arabidopsis thaliana, chromosome 3, complete sequence
Length = 23403063
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 317 actgccagttctggccccagttcc 340
||||||||||||| ||||||||||
Sbjct: 20538662 actgccagttctgtccccagttcc 20538685
>emb|AL132975.1|ATT22E16 Arabidopsis thaliana DNA chromosome 3, BAC clone T22E16
Length = 103240
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 317 actgccagttctggccccagttcc 340
||||||||||||| ||||||||||
Sbjct: 57686 actgccagttctgtccccagttcc 57709
>ref|NM_115407.2| Arabidopsis thaliana ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)
AT3G55500 (ATEXPA16) mRNA, complete cds
Length = 827
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 317 actgccagttctggccccagttcc 340
||||||||||||| ||||||||||
Sbjct: 690 actgccagttctgtccccagttcc 667
>ref|NC_003074.4| Arabidopsis thaliana chromosome 3, complete sequence
Length = 23470805
Score = 40.1 bits (20), Expect = 0.42
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 317 actgccagttctggccccagttcc 340
||||||||||||| ||||||||||
Sbjct: 20586189 actgccagttctgtccccagttcc 20586212
Database: At_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:09 PM
Number of letters in database: 908,940,872
Number of sequences in database: 1,013,581
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 135,957
Number of Sequences: 1013581
Number of extensions: 135957
Number of successful extensions: 8262
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8217
Number of HSP's gapped (non-prelim): 45
length of query: 596
length of database: 908,940,872
effective HSP length: 20
effective length of query: 576
effective length of database: 888,669,252
effective search space: 511873489152
effective search space used: 511873489152
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)